Wall clock time and date at job start Tue Mar 31 2020 06:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30846 * 1 3 3 Si 1.86804 * 119.99819 * 2 1 4 4 H 1.48495 * 109.46985 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46981 * 299.99970 * 3 2 1 6 6 H 1.48498 * 109.47015 * 59.99915 * 3 2 1 7 7 C 1.39932 * 120.00199 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00048 * 197.81617 * 7 2 1 9 9 C 1.41322 * 119.99949 * 17.80891 * 7 2 1 10 10 C 1.40786 * 120.20183 * 24.63296 * 9 7 2 11 11 C 1.37641 * 120.03966 * 180.02562 * 10 9 7 12 12 C 1.38469 * 120.46759 * 359.97438 * 11 10 9 13 13 C 1.39656 * 120.41056 * 0.03930 * 12 11 10 14 14 C 1.48165 * 120.02944 * 179.97438 * 13 12 11 15 15 C 1.38664 * 120.25813 * 65.00023 * 14 13 12 16 16 C 1.38649 * 120.39701 * 179.72636 * 15 14 13 17 17 C 1.37727 * 120.74901 * 0.27567 * 16 15 14 18 18 C 1.39267 * 120.12538 * 359.97438 * 17 16 15 19 19 N 1.37177 * 133.66187 * 180.02562 * 18 17 16 20 20 H 0.97003 * 125.96559 * 359.94023 * 19 18 17 21 21 N 1.40017 * 108.06913 * 179.97438 * 19 18 17 22 22 C 1.30198 * 109.72334 * 0.02562 * 21 19 18 23 23 C 1.40670 * 119.76915 * 359.97438 * 18 17 16 24 24 C 1.39212 * 119.94413 * 0.23824 * 13 12 11 25 25 F 1.35108 * 120.23212 * 179.74473 * 24 13 12 26 26 H 0.96995 * 120.00627 * 359.97438 * 1 2 3 27 27 H 1.07997 * 119.98130 * 0.03911 * 10 9 7 28 28 H 1.07998 * 119.76409 * 179.97438 * 11 10 9 29 29 H 1.08003 * 119.79589 * 180.02562 * 12 11 10 30 30 H 1.07996 * 119.80513 * 0.02562 * 15 14 13 31 31 H 1.08003 * 119.62768 * 180.25987 * 16 15 14 32 32 H 1.08002 * 119.94420 * 179.97438 * 17 16 15 33 33 H 1.07996 * 125.66520 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2424 1.6178 0.0000 4 1 3.7024 1.3465 -0.0006 5 1 1.8836 2.3965 -1.2125 6 1 1.8836 2.3965 1.2125 7 6 2.0082 -1.2118 -0.0005 8 1 3.0493 -1.2344 0.2856 9 6 1.3524 -2.4062 -0.3754 10 6 0.2231 -2.3607 -1.2149 11 6 -0.4133 -3.5260 -1.5775 12 6 0.0490 -4.7494 -1.1226 13 6 1.1673 -4.8168 -0.2887 14 6 1.6545 -6.1303 0.1936 15 6 2.1562 -7.0616 -0.7029 16 6 2.6180 -8.2895 -0.2540 17 6 2.5822 -8.6085 1.0853 18 6 2.0789 -7.6950 2.0082 19 7 1.9153 -7.7171 3.3700 20 1 2.1494 -8.4505 3.9601 21 7 1.3506 -6.4964 3.7594 22 6 1.1654 -5.7442 2.7130 23 6 1.6077 -6.4449 1.5678 24 6 1.8207 -3.6484 0.0934 25 9 2.9000 -3.7065 0.9040 26 1 -0.4851 0.8400 0.0004 27 1 -0.1438 -1.4109 -1.5749 28 1 -1.2794 -3.4859 -2.2214 29 1 -0.4584 -5.6571 -1.4142 30 1 2.1919 -6.8274 -1.7565 31 1 3.0102 -9.0040 -0.9627 32 1 2.9450 -9.5689 1.4206 33 1 0.7451 -4.7495 2.7190 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240313563.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:58 Heat of formation + Delta-G solvation = 53.442067 kcal Electronic energy + Delta-G solvation = -20921.918968 eV Core-core repulsion = 17634.584700 eV Total energy + Delta-G solvation = -3287.334268 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -47.25679 -41.08657 -37.67756 -36.51455 -33.99570 -32.43337 -30.40384 -29.69169 -29.29271 -27.67710 -25.38467 -23.08046 -22.20528 -21.31717 -20.77229 -20.35398 -17.85980 -16.78008 -16.31808 -16.01828 -15.36923 -14.96466 -14.69238 -14.52225 -14.36026 -14.15118 -13.81236 -13.27742 -12.94410 -12.86145 -11.94053 -11.75103 -11.71608 -11.61763 -11.35130 -11.13424 -10.94058 -10.76568 -10.62082 -10.47199 -10.03882 -9.83417 -9.60143 -9.30050 -8.35934 -7.84002 -7.53464 -7.26277 -6.89265 -4.48325 1.10726 1.78584 2.58847 2.62424 2.86737 2.97038 3.03392 3.07967 3.10962 3.86117 4.07963 4.44712 4.85592 4.98666 5.18834 5.31520 5.40173 5.50650 5.55135 5.81859 6.01069 6.03923 6.20279 6.21817 6.50638 6.61286 6.71583 6.77327 6.85969 7.03067 7.06941 7.13893 7.41503 7.51447 7.52042 7.83252 7.84968 7.89734 8.00123 8.44849 8.66024 8.74372 10.04266 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.023875 B = 0.005170 C = 0.004756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.487655 B = 5414.339754 C = 5886.165912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.077 3.923 3 Si 0.911 3.089 4 H -0.259 1.259 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.452 4.452 8 H 0.083 0.917 9 C 0.084 3.916 10 C -0.141 4.141 11 C -0.111 4.111 12 C -0.197 4.197 13 C -0.074 4.074 14 C 0.071 3.929 15 C -0.159 4.159 16 C -0.063 4.063 17 C -0.164 4.164 18 C 0.127 3.873 19 N -0.517 5.517 20 H 0.436 0.564 21 N -0.267 5.267 22 C 0.099 3.901 23 C -0.163 4.163 24 C -0.005 4.005 25 F -0.156 7.156 26 H 0.283 0.717 27 H 0.126 0.874 28 H 0.097 0.903 29 H 0.099 0.901 30 H 0.127 0.873 31 H 0.126 0.874 32 H 0.119 0.881 33 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.707 -10.069 -0.251 10.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.141 4.141 3 Si 0.735 3.265 4 H -0.182 1.182 5 H -0.195 1.195 6 H -0.198 1.198 7 C -0.481 4.481 8 H 0.102 0.898 9 C 0.081 3.919 10 C -0.160 4.160 11 C -0.130 4.130 12 C -0.216 4.216 13 C -0.075 4.075 14 C 0.068 3.932 15 C -0.179 4.179 16 C -0.084 4.084 17 C -0.186 4.186 18 C 0.010 3.990 19 N -0.232 5.232 20 H 0.280 0.720 21 N -0.081 5.081 22 C -0.097 4.097 23 C -0.170 4.170 24 C -0.025 4.025 25 F -0.135 7.135 26 H 0.094 0.906 27 H 0.144 0.856 28 H 0.115 0.885 29 H 0.117 0.883 30 H 0.145 0.855 31 H 0.144 0.856 32 H 0.137 0.863 33 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 1.414 -9.979 1.123 10.141 hybrid contribution 0.678 0.423 -0.349 0.872 sum 2.092 -9.556 0.774 9.813 Atomic orbital electron populations 1.69809 1.07614 1.29558 1.34307 1.25900 0.94749 1.01478 0.92021 0.86205 0.81123 0.80508 0.78686 1.18225 1.19534 1.19808 1.19542 0.98455 0.90879 1.39233 0.89846 1.17555 0.92702 0.90635 0.90976 1.21260 0.97965 0.97419 0.99360 1.20647 0.99204 0.92793 1.00349 1.20214 0.99253 0.96828 1.05339 1.18264 0.98273 0.89332 1.01644 1.18458 0.91902 0.92875 0.90004 1.20991 1.03454 0.93750 0.99692 1.20834 0.96929 0.96268 0.94336 1.19902 1.07674 0.98955 0.92101 1.18830 0.98886 0.96165 0.85083 1.45998 1.57453 1.15557 1.04173 0.72023 1.76685 1.15339 0.92273 1.23789 1.23980 0.97541 0.99730 0.88431 1.18891 1.08951 0.94770 0.94433 1.17818 0.90822 0.93455 1.00435 1.91301 1.53544 1.97190 1.71485 0.90592 0.85607 0.88470 0.88287 0.85465 0.85561 0.86263 0.79104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.35 10.96 55.55 0.61 -18.74 16 2 C 0.08 1.87 5.14 -17.34 -0.09 1.78 16 3 Si 0.91 18.17 29.60 -169.99 -5.03 13.14 16 4 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 5 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 6 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 7 C -0.45 -11.75 8.78 -37.78 -0.33 -12.08 16 8 H 0.08 2.17 7.74 -52.49 -0.41 1.76 16 9 C 0.08 2.17 5.57 -106.80 -0.60 1.58 16 10 C -0.14 -3.40 8.69 -38.84 -0.34 -3.74 16 11 C -0.11 -2.39 10.00 -39.71 -0.40 -2.79 16 12 C -0.20 -4.09 9.73 -38.97 -0.38 -4.47 16 13 C -0.07 -1.61 5.19 -104.93 -0.54 -2.15 16 14 C 0.07 1.36 5.02 -104.60 -0.52 0.84 16 15 C -0.16 -2.59 9.70 -39.27 -0.38 -2.97 16 16 C -0.06 -0.84 10.00 -39.62 -0.40 -1.24 16 17 C -0.16 -2.22 10.06 -39.39 -0.40 -2.62 16 18 C 0.13 2.06 7.32 -84.17 -0.62 1.44 16 19 N -0.52 -7.72 7.44 32.35 0.24 -7.48 16 20 H 0.44 4.77 8.96 -182.66 -1.64 3.13 16 21 N -0.27 -4.70 12.57 30.83 0.39 -4.32 16 22 C 0.10 1.87 11.85 -17.06 -0.20 1.67 16 23 C -0.16 -3.08 5.81 -106.73 -0.62 -3.70 16 24 C 0.00 -0.12 7.25 -38.26 -0.28 -0.40 16 25 F -0.16 -3.89 16.12 2.25 0.04 -3.85 16 26 H 0.28 6.27 8.30 -40.82 -0.34 5.94 16 27 H 0.13 3.12 6.16 -52.49 -0.32 2.79 16 28 H 0.10 1.82 8.06 -52.49 -0.42 1.40 16 29 H 0.10 1.83 8.06 -52.48 -0.42 1.41 16 30 H 0.13 1.91 8.06 -52.49 -0.42 1.49 16 31 H 0.13 1.25 8.06 -52.48 -0.42 0.83 16 32 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 33 H 0.19 3.60 8.06 -52.49 -0.42 3.17 16 LS Contribution 297.63 15.07 4.49 4.49 Total: -1.00 -28.10 297.63 -9.40 -37.50 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -4.04 Total: 8.13 kcal Atomic # 6 Polarization: -22.77 SS G_CDS: -6.09 Total: -28.86 kcal Atomic # 7 Polarization: -31.77 SS G_CDS: 1.24 Total: -30.53 kcal Atomic # 9 Polarization: -3.89 SS G_CDS: 0.04 Total: -3.85 kcal Atomic # 14 Polarization: 18.17 SS G_CDS: -5.03 Total: 13.14 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -28.10 -9.40 -37.50 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240313563.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.938 kcal (2) G-P(sol) polarization free energy of solvation -28.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds