Wall clock time and date at job start Tue Mar 31 2020 06:40:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30788 * 1 3 3 Si 1.86799 * 119.99720 * 2 1 4 4 H 1.48505 * 109.46926 * 274.50678 * 3 2 1 5 5 H 1.48499 * 109.47208 * 34.50883 * 3 2 1 6 6 H 1.48500 * 109.47044 * 154.51048 * 3 2 1 7 7 C 1.40042 * 120.00086 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00195 * 197.54211 * 7 2 1 9 9 C 1.40764 * 120.00273 * 17.54344 * 7 2 1 10 10 C 1.40747 * 120.32546 * 25.69815 * 9 7 2 11 11 C 1.37570 * 119.85822 * 179.97438 * 10 9 7 12 12 F 1.35103 * 119.72983 * 180.02562 * 11 10 9 13 13 C 1.39281 * 120.54791 * 0.02562 * 11 10 9 14 14 C 1.37875 * 120.67109 * 359.69702 * 13 11 10 15 15 C 1.39376 * 120.11960 * 0.56201 * 14 13 11 16 16 C 1.47454 * 120.27160 * 179.74604 * 15 14 13 17 17 C 1.39168 * 120.30087 * 64.69269 * 16 15 14 18 18 C 1.38428 * 120.35763 * 180.02562 * 17 16 15 19 19 C 1.37911 * 120.78994 * 0.02562 * 18 17 16 20 20 C 1.39280 * 120.20822 * 359.95971 * 19 18 17 21 21 N 1.37182 * 133.62761 * 180.02562 * 20 19 18 22 22 H 0.97006 * 125.98701 * 0.02562 * 21 20 19 23 23 N 1.40032 * 108.03623 * 179.97438 * 21 20 19 24 24 C 1.30296 * 109.68548 * 359.97438 * 23 21 20 25 25 C 1.40636 * 119.79570 * 0.03846 * 20 19 18 26 26 H 0.96997 * 120.00089 * 0.02562 * 1 2 3 27 27 H 1.08002 * 120.07425 * 359.96279 * 10 9 7 28 28 H 1.07994 * 119.66590 * 179.97438 * 13 11 10 29 29 H 1.08001 * 119.93337 * 180.29930 * 14 13 11 30 30 H 1.08003 * 119.82043 * 0.02562 * 17 16 15 31 31 H 1.08002 * 119.61047 * 180.02562 * 18 17 16 32 32 H 1.08000 * 119.89794 * 179.97438 * 19 18 17 33 33 H 1.07997 * 125.65623 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2418 1.6178 0.0000 4 1 2.3940 2.1014 -1.3958 5 1 1.4901 2.6233 0.7932 6 1 3.5838 1.4146 0.6025 7 6 2.0081 -1.2128 0.0005 8 1 3.0504 -1.2344 0.2824 9 6 1.3535 -2.4037 -0.3664 10 6 0.2344 -2.3658 -1.2192 11 6 -0.3977 -3.5356 -1.5720 12 9 -1.4713 -3.4962 -2.3913 13 6 0.0599 -4.7603 -1.0917 14 6 1.1574 -4.8237 -0.2596 15 6 1.8157 -3.6554 0.1200 16 6 2.9864 -3.7189 1.0142 17 6 4.1552 -4.3488 0.5972 18 6 5.2548 -4.4096 1.4359 19 6 5.2135 -3.8500 2.6957 20 6 4.0583 -3.2124 3.1418 21 7 3.7186 -2.5771 4.3092 22 1 4.2915 -2.4628 5.0836 23 7 2.4001 -2.1214 4.1870 24 6 1.9305 -2.4456 3.0156 25 6 2.9314 -3.1409 2.3034 26 1 -0.4850 0.8400 -0.0004 27 1 -0.1273 -1.4204 -1.5957 28 1 -0.4474 -5.6698 -1.3775 29 1 1.5050 -5.7802 0.1020 30 1 4.2046 -4.7927 -0.3861 31 1 6.1558 -4.9011 1.0998 32 1 6.0797 -3.9061 3.3384 33 1 0.9391 -2.2212 2.6507 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240314095.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:49 Heat of formation + Delta-G solvation = 51.100156 kcal Electronic energy + Delta-G solvation = -21200.005181 eV Core-core repulsion = 17912.569360 eV Total energy + Delta-G solvation = -3287.435820 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -47.70664 -40.81166 -37.77141 -36.16889 -33.85723 -32.30794 -30.15004 -29.82080 -29.04664 -27.54785 -25.50866 -22.70339 -21.98496 -21.21873 -20.96089 -19.98153 -17.69396 -17.06153 -16.19475 -15.95567 -15.01696 -14.83328 -14.66833 -14.37833 -14.21532 -14.19614 -13.99675 -13.08497 -12.92834 -12.69624 -12.21118 -11.82415 -11.61057 -11.47226 -11.29040 -11.12544 -10.91506 -10.59234 -10.48142 -10.30908 -9.95766 -9.87015 -9.48526 -9.34182 -8.05923 -7.71574 -7.57855 -7.17673 -6.92306 -4.59584 1.39484 2.05463 2.54642 2.70355 2.99658 3.03641 3.08043 3.16811 3.24143 3.80235 4.31917 4.42831 5.15531 5.27131 5.32957 5.51828 5.59582 5.62770 5.82800 5.85018 6.13257 6.27628 6.32045 6.40575 6.53973 6.80720 6.84988 6.89512 7.02978 7.03759 7.23060 7.34544 7.39657 7.58509 7.68247 7.78269 7.79361 8.04843 8.15230 8.38710 8.62322 8.68114 9.93276 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.012727 B = 0.008534 C = 0.006083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2199.562809 B = 3280.079035 C = 4601.816263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.775 5.775 2 C 0.079 3.921 3 Si 0.905 3.095 4 H -0.265 1.265 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.435 4.435 8 H 0.085 0.915 9 C 0.151 3.849 10 C -0.197 4.197 11 C 0.110 3.890 12 F -0.167 7.167 13 C -0.280 4.280 14 C -0.039 4.039 15 C -0.205 4.205 16 C 0.112 3.888 17 C -0.179 4.179 18 C -0.062 4.062 19 C -0.178 4.178 20 C 0.125 3.875 21 N -0.523 5.523 22 H 0.432 0.568 23 N -0.281 5.281 24 C 0.116 3.884 25 C -0.158 4.158 26 H 0.286 0.714 27 H 0.130 0.870 28 H 0.101 0.899 29 H 0.101 0.899 30 H 0.121 0.879 31 H 0.120 0.880 32 H 0.113 0.887 33 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.588 -3.620 3.160 8.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.399 5.399 2 C -0.142 4.142 3 Si 0.729 3.271 4 H -0.190 1.190 5 H -0.200 1.200 6 H -0.184 1.184 7 C -0.463 4.463 8 H 0.103 0.897 9 C 0.148 3.852 10 C -0.217 4.217 11 C 0.091 3.909 12 F -0.146 7.146 13 C -0.300 4.300 14 C -0.057 4.057 15 C -0.207 4.207 16 C 0.109 3.891 17 C -0.199 4.199 18 C -0.083 4.083 19 C -0.200 4.200 20 C 0.009 3.991 21 N -0.237 5.237 22 H 0.276 0.724 23 N -0.095 5.095 24 C -0.079 4.079 25 C -0.166 4.166 26 H 0.097 0.903 27 H 0.147 0.853 28 H 0.119 0.881 29 H 0.119 0.881 30 H 0.139 0.861 31 H 0.138 0.862 32 H 0.131 0.869 33 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 6.056 -2.843 4.303 7.955 hybrid contribution 0.614 0.531 -0.478 0.942 sum 6.670 -2.313 3.824 8.029 Atomic orbital electron populations 1.69778 1.07640 1.30003 1.32443 1.25969 0.94706 1.01567 0.91914 0.86316 0.80886 0.80511 0.79410 1.19026 1.19981 1.18378 1.19532 0.98339 0.90615 1.37845 0.89704 1.17197 0.89365 0.91063 0.87574 1.21216 1.01017 0.95984 1.03522 1.17785 0.85353 0.95245 0.92509 1.91341 1.54498 1.97598 1.71189 1.20157 1.04057 0.95082 1.10694 1.20354 0.94093 0.95972 0.95297 1.18554 1.01376 0.93777 1.06997 1.18296 0.92533 0.88843 0.89432 1.21065 0.92878 1.05547 1.00401 1.20746 0.97875 0.96987 0.92662 1.19824 0.95802 1.06396 0.98004 1.18859 0.95982 0.96464 0.87815 1.45978 1.11849 1.51490 1.14394 0.72442 1.76720 0.91922 1.20196 1.20642 1.23939 1.00265 0.94220 0.89498 1.18916 0.93990 1.07582 0.96078 0.90261 0.85271 0.88095 0.88127 0.86068 0.86207 0.86870 0.79140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.42 11.02 55.55 0.61 -17.80 16 2 C 0.08 1.84 5.13 -17.32 -0.09 1.75 16 3 Si 0.90 18.00 29.59 -169.99 -5.03 12.97 16 4 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 5 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 6 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 7 C -0.44 -10.42 7.45 -37.95 -0.28 -10.71 16 8 H 0.08 2.07 7.12 -52.49 -0.37 1.69 16 9 C 0.15 3.63 5.58 -106.55 -0.59 3.03 16 10 C -0.20 -4.84 8.64 -38.88 -0.34 -5.18 16 11 C 0.11 2.57 7.28 -39.44 -0.29 2.29 16 12 F -0.17 -3.81 17.26 2.25 0.04 -3.78 16 13 C -0.28 -6.00 10.00 -39.33 -0.39 -6.39 16 14 C -0.04 -0.80 9.71 -39.29 -0.38 -1.18 16 15 C -0.21 -4.49 5.24 -104.27 -0.55 -5.04 16 16 C 0.11 2.24 4.39 -104.60 -0.46 1.78 16 17 C -0.18 -3.10 9.71 -39.17 -0.38 -3.48 16 18 C -0.06 -0.91 10.00 -39.63 -0.40 -1.31 16 19 C -0.18 -2.68 10.06 -39.31 -0.40 -3.08 16 20 C 0.13 2.21 7.32 -84.18 -0.62 1.59 16 21 N -0.52 -8.61 7.45 32.35 0.24 -8.37 16 22 H 0.43 5.43 8.96 -182.64 -1.64 3.80 16 23 N -0.28 -5.37 12.58 30.81 0.39 -4.98 16 24 C 0.12 2.36 11.26 -17.10 -0.19 2.17 16 25 C -0.16 -3.16 5.25 -106.69 -0.56 -3.72 16 26 H 0.29 6.24 8.29 -40.82 -0.34 5.90 16 27 H 0.13 3.30 6.24 -52.49 -0.33 2.98 16 28 H 0.10 1.95 8.06 -52.49 -0.42 1.53 16 29 H 0.10 1.82 8.06 -52.49 -0.42 1.40 16 30 H 0.12 1.94 8.06 -52.48 -0.42 1.52 16 31 H 0.12 1.37 8.06 -52.49 -0.42 0.94 16 32 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 33 H 0.19 3.99 8.06 -52.49 -0.42 3.57 16 LS Contribution 295.20 15.07 4.45 4.45 Total: -1.00 -26.17 295.20 -9.22 -35.39 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -4.01 Total: 9.59 kcal Atomic # 6 Polarization: -21.56 SS G_CDS: -5.91 Total: -27.47 kcal Atomic # 7 Polarization: -32.39 SS G_CDS: 1.24 Total: -31.15 kcal Atomic # 9 Polarization: -3.81 SS G_CDS: 0.04 Total: -3.78 kcal Atomic # 14 Polarization: 18.00 SS G_CDS: -5.03 Total: 12.97 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -26.17 -9.22 -35.39 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240314095.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.490 kcal (2) G-P(sol) polarization free energy of solvation -26.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds