Wall clock time and date at job start Tue Mar 31 2020 06:41:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30837 * 1 3 3 Si 1.86792 * 119.99722 * 2 1 4 4 H 1.48506 * 109.47518 * 270.00031 * 3 2 1 5 5 H 1.48500 * 109.47263 * 30.00257 * 3 2 1 6 6 H 1.48500 * 109.47017 * 150.00549 * 3 2 1 7 7 C 1.39921 * 120.00119 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00336 * 162.81726 * 7 2 1 9 9 C 1.41428 * 119.99835 * 342.81356 * 7 2 1 10 10 C 1.40764 * 120.17378 * 334.75274 * 9 7 2 11 11 C 1.37910 * 119.99021 * 179.97438 * 10 9 7 12 12 F 1.35102 * 119.82636 * 180.02562 * 11 10 9 13 13 C 1.38626 * 120.34270 * 359.97323 * 11 10 9 14 14 C 1.39765 * 120.34124 * 0.02621 * 13 11 10 15 15 C 1.48191 * 119.99744 * 179.97438 * 14 13 11 16 16 C 1.38654 * 120.25680 * 129.72465 * 15 14 13 17 17 C 1.38652 * 120.39593 * 180.27188 * 16 15 14 18 18 C 1.37729 * 120.74632 * 0.02562 * 17 16 15 19 19 C 1.39255 * 120.12625 * 359.97438 * 18 17 16 20 20 N 1.37190 * 133.66038 * 179.97438 * 19 18 17 21 21 H 0.96991 * 125.97178 * 359.97438 * 20 19 18 22 22 N 1.40026 * 108.06079 * 180.02562 * 20 19 18 23 23 C 1.30198 * 109.72554 * 359.97438 * 22 20 19 24 24 C 1.40665 * 119.77064 * 0.02562 * 19 18 17 25 25 C 1.38885 * 119.99776 * 0.27064 * 14 13 11 26 26 H 0.96995 * 120.00430 * 359.97438 * 1 2 3 27 27 H 1.08003 * 120.00207 * 359.97438 * 10 9 7 28 28 H 1.08001 * 119.83143 * 180.02562 * 13 11 10 29 29 H 1.08002 * 119.80584 * 0.25282 * 16 15 14 30 30 H 1.07999 * 119.62616 * 179.97438 * 17 16 15 31 31 H 1.08004 * 119.93464 * 179.97438 * 18 17 16 32 32 H 1.07999 * 125.66416 * 180.02562 * 23 22 20 33 33 H 1.08004 * 120.16099 * 179.72488 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4898 2.0465 -1.4001 5 1 1.4397 2.6526 0.7001 6 1 3.5399 1.4401 0.6999 7 6 2.0080 -1.2117 -0.0005 8 1 3.0518 -1.2325 -0.2768 9 6 1.3482 -2.4094 0.3608 10 6 0.2190 -2.3695 1.2004 11 6 -0.4217 -3.5396 1.5499 12 9 -1.5055 -3.4974 2.3555 13 6 0.0398 -4.7586 1.0782 14 6 1.1596 -4.8146 0.2438 15 6 1.6468 -6.1220 -0.2557 16 6 1.8935 -6.3054 -1.6077 17 6 2.3440 -7.5291 -2.0789 18 6 2.5537 -8.5820 -1.2161 19 6 2.3144 -8.4270 0.1469 20 7 2.4248 -9.2630 1.2291 21 1 2.7172 -10.1875 1.2073 22 7 2.0407 -8.5486 2.3705 23 6 1.7071 -7.3349 2.0378 24 6 1.8571 -7.1913 0.6397 25 6 1.8195 -3.6455 -0.1122 26 1 -0.4850 0.8400 0.0004 27 1 -0.1454 -1.4226 1.5707 28 1 -0.4686 -5.6699 1.3568 29 1 1.7336 -5.4904 -2.2980 30 1 2.5318 -7.6584 -3.1346 31 1 2.9044 -9.5297 -1.5974 32 1 1.3710 -6.5655 2.7171 33 1 2.6877 -3.6861 -0.7532 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240317367.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:11 Heat of formation + Delta-G solvation = 49.082665 kcal Electronic energy + Delta-G solvation = -20486.365045 eV Core-core repulsion = 17198.841739 eV Total energy + Delta-G solvation = -3287.523305 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -47.68972 -41.20222 -37.84763 -36.51566 -34.02024 -32.39498 -30.39249 -29.76901 -29.37455 -27.68389 -25.53706 -23.20638 -22.28784 -21.41970 -20.73739 -20.41726 -18.02218 -16.84681 -16.40215 -15.72825 -15.17588 -14.90422 -14.78433 -14.68609 -14.58780 -14.39100 -14.21391 -13.41682 -13.14224 -12.88864 -12.15143 -11.87205 -11.69282 -11.56318 -11.28023 -11.10274 -11.00517 -10.82212 -10.67389 -10.41149 -10.14681 -10.00876 -9.74228 -9.29133 -8.45008 -7.97455 -7.55805 -7.20672 -6.90797 -4.56685 1.00436 1.71165 2.57536 2.63631 2.79780 2.88126 3.01107 3.02724 3.09126 3.82613 4.03976 4.41493 4.79044 4.90625 5.11454 5.23740 5.41634 5.43761 5.49423 5.75211 5.94431 6.02173 6.13700 6.27074 6.51751 6.56428 6.63771 6.73060 6.79985 6.92329 7.07750 7.10518 7.38206 7.43076 7.57535 7.64724 7.75124 7.79788 8.06980 8.41259 8.68071 8.70024 10.02638 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.022141 B = 0.004698 C = 0.004202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.341022 B = 5958.084185 C = 6662.232224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.075 3.925 3 Si 0.910 3.090 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.259 1.259 7 C -0.455 4.455 8 H 0.084 0.916 9 C 0.127 3.873 10 C -0.194 4.194 11 C 0.106 3.894 12 F -0.166 7.166 13 C -0.257 4.257 14 C -0.019 4.019 15 C 0.068 3.932 16 C -0.158 4.158 17 C -0.060 4.060 18 C -0.166 4.166 19 C 0.128 3.872 20 N -0.517 5.517 21 H 0.436 0.564 22 N -0.268 5.268 23 C 0.092 3.908 24 C -0.170 4.170 25 C -0.202 4.202 26 H 0.284 0.716 27 H 0.130 0.870 28 H 0.103 0.897 29 H 0.131 0.869 30 H 0.127 0.873 31 H 0.119 0.881 32 H 0.194 0.806 33 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.821 -9.849 -2.191 10.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.144 4.144 3 Si 0.734 3.266 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.183 1.183 7 C -0.484 4.484 8 H 0.102 0.898 9 C 0.124 3.876 10 C -0.214 4.214 11 C 0.087 3.913 12 F -0.145 7.145 13 C -0.277 4.277 14 C -0.020 4.020 15 C 0.065 3.935 16 C -0.178 4.178 17 C -0.081 4.081 18 C -0.188 4.188 19 C 0.011 3.989 20 N -0.232 5.232 21 H 0.280 0.720 22 N -0.082 5.082 23 C -0.104 4.104 24 C -0.177 4.177 25 C -0.222 4.222 26 H 0.095 0.905 27 H 0.147 0.853 28 H 0.121 0.879 29 H 0.149 0.851 30 H 0.145 0.855 31 H 0.137 0.863 32 H 0.210 0.790 33 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 3.697 -10.534 -1.168 11.225 hybrid contribution 0.120 0.821 -0.612 1.031 sum 3.817 -9.713 -1.779 10.587 Atomic orbital electron populations 1.69804 1.07696 1.29763 1.33731 1.25964 0.94764 1.01617 0.92038 0.86267 0.80663 0.80258 0.79381 1.19319 1.19961 1.18268 1.19591 0.98065 0.90812 1.39892 0.89799 1.17280 0.90160 0.92142 0.87970 1.21371 1.00804 0.96016 1.03198 1.17535 0.85365 0.94995 0.93376 1.91347 1.53639 1.97558 1.71928 1.20233 1.02791 0.95281 1.09416 1.18035 0.95563 0.90554 0.97803 1.18573 0.91777 0.91316 0.91796 1.21077 1.04171 0.97903 0.94634 1.20875 0.95993 0.92180 0.99027 1.19911 1.09340 1.00331 0.89253 1.18829 0.99056 0.90905 0.90101 1.46002 1.61314 1.13160 1.02688 0.71977 1.76679 1.17254 1.06211 1.08046 1.24019 0.97614 0.94219 0.94533 1.18877 1.10652 0.94351 0.93831 1.21119 1.03528 0.91345 1.06195 0.90458 0.85270 0.87922 0.85114 0.85477 0.86258 0.78971 0.87855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.41 10.96 55.55 0.61 -18.80 16 2 C 0.08 1.79 5.14 -17.35 -0.09 1.70 16 3 Si 0.91 17.63 29.59 -169.99 -5.03 12.60 16 4 H -0.27 -5.12 7.11 56.52 0.40 -4.71 16 5 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 6 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 7 C -0.45 -11.24 9.05 -37.74 -0.34 -11.58 16 8 H 0.08 1.97 7.90 -52.49 -0.41 1.55 16 9 C 0.13 3.17 5.56 -106.88 -0.59 2.58 16 10 C -0.19 -4.88 8.66 -38.75 -0.34 -5.21 16 11 C 0.11 2.51 7.28 -39.56 -0.29 2.22 16 12 F -0.17 -3.81 17.26 2.25 0.04 -3.77 16 13 C -0.26 -5.56 8.71 -38.87 -0.34 -5.90 16 14 C -0.02 -0.40 5.40 -105.00 -0.57 -0.97 16 15 C 0.07 1.24 5.49 -104.59 -0.57 0.66 16 16 C -0.16 -2.50 9.48 -39.27 -0.37 -2.87 16 17 C -0.06 -0.77 10.00 -39.61 -0.40 -1.17 16 18 C -0.17 -2.11 10.06 -39.39 -0.40 -2.51 16 19 C 0.13 1.90 7.32 -84.17 -0.62 1.29 16 20 N -0.52 -7.02 7.44 32.35 0.24 -6.77 16 21 H 0.44 4.29 8.96 -182.66 -1.64 2.65 16 22 N -0.27 -4.23 12.57 30.83 0.39 -3.84 16 23 C 0.09 1.52 11.17 -17.06 -0.19 1.33 16 24 C -0.17 -2.91 5.87 -106.74 -0.63 -3.54 16 25 C -0.20 -4.55 9.25 -38.49 -0.36 -4.91 16 26 H 0.28 6.39 8.30 -40.82 -0.34 6.05 16 27 H 0.13 3.40 6.18 -52.48 -0.32 3.08 16 28 H 0.10 2.07 7.80 -52.49 -0.41 1.66 16 29 H 0.13 2.00 8.03 -52.49 -0.42 1.58 16 30 H 0.13 1.23 8.06 -52.49 -0.42 0.80 16 31 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 32 H 0.19 2.99 7.66 -52.49 -0.40 2.59 16 33 H 0.10 2.18 8.04 -52.48 -0.42 1.76 16 LS Contribution 296.59 15.07 4.47 4.47 Total: -1.00 -27.32 296.59 -9.38 -36.70 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -4.01 Total: 8.30 kcal Atomic # 6 Polarization: -22.80 SS G_CDS: -6.08 Total: -28.88 kcal Atomic # 7 Polarization: -30.65 SS G_CDS: 1.24 Total: -29.42 kcal Atomic # 9 Polarization: -3.81 SS G_CDS: 0.04 Total: -3.77 kcal Atomic # 14 Polarization: 17.63 SS G_CDS: -5.03 Total: 12.60 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -27.32 -9.38 -36.70 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240317367.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.781 kcal (2) G-P(sol) polarization free energy of solvation -27.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds