Wall clock time and date at job start Tue Mar 31 2020 06:39:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86799 * 120.00419 * 2 1 4 4 H 1.48496 * 109.47494 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46965 * 300.00413 * 3 2 1 6 6 H 1.48503 * 109.47060 * 59.99965 * 3 2 1 7 7 C 1.39922 * 119.99989 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00467 * 162.74819 * 7 2 1 9 9 C 1.41430 * 119.99830 * 342.75418 * 7 2 1 10 10 C 1.40753 * 120.17028 * 334.77612 * 9 7 2 11 11 C 1.37914 * 119.97429 * 180.02562 * 10 9 7 12 12 F 1.35100 * 119.83436 * 179.97438 * 11 10 9 13 13 C 1.38652 * 120.33186 * 359.72482 * 11 10 9 14 14 C 1.39695 * 120.34401 * 0.55706 * 13 11 10 15 15 C 1.48345 * 119.99242 * 179.72169 * 14 13 11 16 16 C 1.40721 * 119.31082 * 179.72816 * 15 14 13 17 17 C 1.35353 * 121.61531 * 179.97438 * 16 15 14 18 18 C 1.41243 * 119.83696 * 359.97438 * 17 16 15 19 19 C 1.38208 * 134.55499 * 180.02562 * 18 17 16 20 20 N 1.34024 * 107.94321 * 179.97438 * 19 18 17 21 21 H 0.96998 * 125.02047 * 179.97438 * 20 19 18 22 22 N 1.39945 * 109.95734 * 0.02562 * 20 19 18 23 23 C 1.32152 * 108.92455 * 359.97438 * 22 20 19 24 24 C 1.37730 * 119.30538 * 359.49706 * 15 14 13 25 25 C 1.38820 * 120.02066 * 359.44288 * 14 13 11 26 26 H 0.97000 * 120.00060 * 359.97438 * 1 2 3 27 27 H 1.07996 * 120.01727 * 0.02562 * 10 9 7 28 28 H 1.07999 * 119.82953 * 180.26972 * 13 11 10 29 29 H 1.08004 * 119.19027 * 0.02562 * 16 15 14 30 30 H 1.07999 * 120.08058 * 180.02562 * 17 16 15 31 31 H 1.07996 * 126.03078 * 0.02562 * 19 18 17 32 32 H 1.08007 * 120.29073 * 359.89586 * 24 15 14 33 33 H 1.08002 * 120.16702 * 180.25091 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 3.7024 1.3463 -0.0006 5 1 1.8836 2.3964 -1.2125 6 1 1.8837 2.3964 1.2125 7 6 2.0079 -1.2118 -0.0005 8 1 3.0515 -1.2328 -0.2779 9 6 1.3484 -2.4092 0.3621 10 6 0.2198 -2.3687 1.2021 11 6 -0.4199 -3.5389 1.5536 12 9 -1.5026 -3.4968 2.3605 13 6 0.0395 -4.7579 1.0788 14 6 1.1619 -4.8144 0.2490 15 6 1.6504 -6.1234 -0.2496 16 6 2.7789 -6.1631 -1.0893 17 6 3.2645 -7.3314 -1.5704 18 6 2.6338 -8.5482 -1.2292 19 6 2.8607 -9.8769 -1.5346 20 7 1.9237 -10.6086 -0.9158 21 1 1.8512 -11.5748 -0.9623 22 7 1.0647 -9.7727 -0.1935 23 6 1.4530 -8.5194 -0.3516 24 6 0.9927 -7.2747 0.1231 25 6 1.8168 -3.6454 -0.1140 26 1 -0.4850 0.8400 0.0004 27 1 -0.1452 -1.4217 1.5714 28 1 -0.4702 -5.6689 1.3556 29 1 3.2700 -5.2389 -1.3558 30 1 4.1326 -7.3331 -2.2128 31 1 3.6536 -10.2584 -2.1607 32 1 0.1315 -7.2241 0.7729 33 1 2.6824 -3.6860 -0.7587 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240559129.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:29 Heat of formation + Delta-G solvation = 58.842005 kcal Electronic energy + Delta-G solvation = -20113.334852 eV Core-core repulsion = 16826.234743 eV Total energy + Delta-G solvation = -3287.100109 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -47.65592 -41.05772 -38.15660 -36.34117 -33.79855 -32.02565 -31.26340 -29.79935 -28.54202 -28.14953 -25.51784 -23.96857 -22.19165 -21.03657 -20.45969 -19.90238 -18.03392 -17.51768 -16.50118 -16.03806 -15.22361 -14.86102 -14.76137 -14.69265 -14.45591 -14.32310 -13.77983 -13.59638 -12.88815 -12.77227 -12.11218 -12.03238 -11.83728 -11.64442 -11.40429 -11.10735 -10.96372 -10.67676 -10.43573 -10.19526 -10.16381 -9.91841 -9.67824 -9.33746 -8.67362 -7.60886 -7.49282 -7.03362 -6.85820 -4.53581 0.71580 1.80119 2.57622 2.62401 2.75617 2.91313 3.03397 3.08137 3.12466 3.85096 4.15716 4.42306 4.56493 4.67985 5.14061 5.32327 5.39999 5.48281 5.61366 5.78681 5.82180 5.90968 6.19616 6.47512 6.55174 6.65437 6.67505 6.78251 6.87595 6.99891 7.10411 7.13595 7.14797 7.46792 7.60503 7.69591 7.74821 7.82663 8.10904 8.44384 8.71478 8.73272 10.06139 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.025777 B = 0.004064 C = 0.003548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.977171 B = 6887.457403 C = 7889.437508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.075 3.925 3 Si 0.911 3.089 4 H -0.259 1.259 5 H -0.273 1.273 6 H -0.271 1.271 7 C -0.456 4.456 8 H 0.085 0.915 9 C 0.125 3.875 10 C -0.191 4.191 11 C 0.104 3.896 12 F -0.166 7.166 13 C -0.256 4.256 14 C -0.018 4.018 15 C 0.029 3.971 16 C -0.130 4.130 17 C -0.059 4.059 18 C -0.207 4.207 19 C 0.071 3.929 20 N -0.435 5.435 21 H 0.439 0.561 22 N -0.317 5.317 23 C 0.115 3.885 24 C -0.120 4.120 25 C -0.204 4.204 26 H 0.283 0.717 27 H 0.130 0.870 28 H 0.107 0.893 29 H 0.131 0.869 30 H 0.122 0.878 31 H 0.183 0.817 32 H 0.131 0.869 33 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.305 -12.213 -3.792 14.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C -0.144 4.144 3 Si 0.735 3.265 4 H -0.182 1.182 5 H -0.199 1.199 6 H -0.196 1.196 7 C -0.485 4.485 8 H 0.103 0.897 9 C 0.122 3.878 10 C -0.211 4.211 11 C 0.085 3.915 12 F -0.145 7.145 13 C -0.276 4.276 14 C -0.018 4.018 15 C 0.025 3.975 16 C -0.149 4.149 17 C -0.079 4.079 18 C -0.217 4.217 19 C -0.086 4.086 20 N -0.135 5.135 21 H 0.283 0.717 22 N -0.146 5.146 23 C -0.038 4.038 24 C -0.141 4.141 25 C -0.223 4.223 26 H 0.095 0.905 27 H 0.148 0.852 28 H 0.125 0.875 29 H 0.149 0.851 30 H 0.140 0.860 31 H 0.200 0.800 32 H 0.149 0.851 33 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 5.170 -12.851 -3.205 14.218 hybrid contribution 0.599 0.711 -0.359 0.996 sum 5.768 -12.140 -3.564 13.906 Atomic orbital electron populations 1.69814 1.07700 1.29603 1.33997 1.25965 0.94762 1.01616 0.92072 0.86215 0.80978 0.80638 0.78686 1.18211 1.19876 1.19599 1.19617 0.98109 0.90799 1.40003 0.89735 1.17298 0.90227 0.92241 0.88016 1.21394 1.00732 0.95987 1.02986 1.17563 0.85483 0.95045 0.93414 1.91343 1.53713 1.97561 1.71868 1.20358 1.02444 0.95404 1.09390 1.18074 0.95353 0.90794 0.97625 1.18752 0.92993 0.92330 0.93453 1.20794 0.97021 0.98173 0.98913 1.20081 0.98693 0.90039 0.99088 1.19687 1.01463 0.93177 1.07325 1.22585 0.95348 0.91468 0.99164 1.46253 1.21399 1.10048 1.35799 0.71745 1.77699 1.15709 1.00525 1.20647 1.20875 0.94335 0.92319 0.96287 1.20167 1.02366 0.87530 1.04062 1.21193 1.03571 0.91610 1.05952 0.90549 0.85230 0.87550 0.85101 0.86038 0.79958 0.85113 0.87520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.75 10.96 55.55 0.61 -19.14 16 2 C 0.07 1.80 5.14 -17.35 -0.09 1.71 16 3 Si 0.91 17.81 29.59 -169.99 -5.03 12.78 16 4 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 5 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 6 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 7 C -0.46 -11.41 9.05 -37.74 -0.34 -11.75 16 8 H 0.08 1.99 7.90 -52.49 -0.41 1.58 16 9 C 0.12 3.17 5.56 -106.88 -0.59 2.58 16 10 C -0.19 -4.93 8.66 -38.75 -0.34 -5.27 16 11 C 0.10 2.55 7.28 -39.55 -0.29 2.26 16 12 F -0.17 -3.94 17.26 2.25 0.04 -3.90 16 13 C -0.26 -5.81 9.39 -38.88 -0.37 -6.17 16 14 C -0.02 -0.39 5.87 -104.98 -0.62 -1.01 16 15 C 0.03 0.55 5.86 -104.99 -0.62 -0.06 16 16 C -0.13 -2.12 9.27 -39.67 -0.37 -2.48 16 17 C -0.06 -0.81 10.06 -39.47 -0.40 -1.21 16 18 C -0.21 -2.94 6.32 -105.15 -0.66 -3.60 16 19 C 0.07 0.71 12.07 -16.61 -0.20 0.51 16 20 N -0.43 -4.62 7.18 30.84 0.22 -4.40 16 21 H 0.44 2.75 8.96 -182.72 -1.64 1.11 16 22 N -0.32 -4.99 12.71 33.23 0.42 -4.56 16 23 C 0.11 1.95 7.48 -83.09 -0.62 1.33 16 24 C -0.12 -2.20 9.48 -38.74 -0.37 -2.57 16 25 C -0.20 -4.67 9.15 -38.51 -0.35 -5.02 16 26 H 0.28 6.45 8.30 -40.82 -0.34 6.11 16 27 H 0.13 3.48 6.18 -52.49 -0.32 3.16 16 28 H 0.11 2.21 6.11 -52.49 -0.32 1.89 16 29 H 0.13 2.01 6.06 -52.48 -0.32 1.69 16 30 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 31 H 0.18 0.93 8.06 -52.49 -0.42 0.51 16 32 H 0.13 2.37 6.08 -52.48 -0.32 2.05 16 33 H 0.11 2.20 6.09 -52.49 -0.32 1.88 16 LS Contribution 291.46 15.07 4.39 4.39 Total: -1.00 -29.88 291.46 -9.20 -39.08 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -3.63 Total: 6.50 kcal Atomic # 6 Polarization: -24.54 SS G_CDS: -6.22 Total: -30.76 kcal Atomic # 7 Polarization: -29.35 SS G_CDS: 1.25 Total: -28.10 kcal Atomic # 9 Polarization: -3.94 SS G_CDS: 0.04 Total: -3.90 kcal Atomic # 14 Polarization: 17.81 SS G_CDS: -5.03 Total: 12.78 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -29.88 -9.20 -39.08 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240559129.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.923 kcal (2) G-P(sol) polarization free energy of solvation -29.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds