Wall clock time and date at job start Tue Mar 31 2020 06:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31077 * 1 3 3 Si 1.86801 * 119.99556 * 2 1 4 4 H 1.48500 * 109.46773 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46984 * 299.99808 * 3 2 1 6 6 H 1.48496 * 109.47310 * 59.99911 * 3 2 1 7 7 C 1.39687 * 119.99969 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99677 * 179.97438 * 7 2 1 9 9 C 1.40963 * 120.00436 * 0.02562 * 7 2 1 10 10 C 1.38992 * 126.92884 * 8.19695 * 9 7 2 11 11 N 1.35583 * 109.24241 * 180.02562 * 10 9 7 12 12 H 0.97002 * 124.70278 * 180.02562 * 11 10 9 13 13 C 1.38180 * 110.59267 * 359.97438 * 11 10 9 14 14 C 1.39160 * 132.73908 * 180.02562 * 13 11 10 15 15 C 1.38003 * 120.24773 * 179.97438 * 14 13 11 16 16 C 1.38360 * 120.78008 * 0.02562 * 15 14 13 17 17 C 1.39159 * 120.09780 * 359.97438 * 16 15 14 18 18 C 1.48112 * 120.28478 * 179.97438 * 17 16 15 19 19 N 1.32746 * 119.75522 * 122.08797 * 18 17 16 20 20 C 1.31713 * 121.63360 * 180.02562 * 19 18 17 21 21 C 1.38324 * 120.95849 * 359.97438 * 20 19 18 22 22 C 1.38707 * 119.40811 * 0.29432 * 21 20 19 23 23 C 1.38655 * 118.49908 * 359.46216 * 22 21 20 24 24 F 1.35098 * 120.49696 * 180.26670 * 23 22 21 25 25 C 1.40230 * 107.88852 * 0.23018 * 13 11 10 26 26 H 0.96996 * 120.00711 * 0.02562 * 1 2 3 27 27 H 1.07999 * 125.38163 * 0.02562 * 10 9 7 28 28 H 1.08003 * 119.87807 * 359.97438 * 14 13 11 29 29 H 1.08002 * 119.60991 * 180.02562 * 15 14 13 30 30 H 1.07997 * 119.94779 * 180.02562 * 16 15 14 31 31 H 1.07996 * 119.51824 * 180.02562 * 20 19 18 32 32 H 1.07999 * 120.29443 * 180.02562 * 21 20 19 33 33 H 1.08004 * 120.75509 * 179.70552 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3108 0.0000 0.0000 3 14 2.2447 1.6178 0.0000 4 1 3.7047 1.3465 -0.0006 5 1 1.8859 2.3964 -1.2125 6 1 1.8859 2.3965 1.2124 7 6 2.0092 -1.2097 0.0005 8 1 3.0892 -1.2097 0.0001 9 6 1.3045 -2.4306 0.0005 10 6 -0.0654 -2.6040 -0.1584 11 7 -0.3582 -3.9265 -0.0989 12 1 -1.2498 -4.2991 -0.1838 13 6 0.7897 -4.6701 0.0983 14 6 1.0195 -6.0366 0.2257 15 6 2.3009 -6.5110 0.4196 16 6 3.3746 -5.6413 0.4910 17 6 3.1716 -4.2702 0.3666 18 6 4.3179 -3.3354 0.4430 19 7 4.5689 -2.5165 -0.5712 20 6 5.5783 -1.6709 -0.5428 21 6 6.4200 -1.6041 0.5529 22 6 6.1992 -2.4451 1.6336 23 6 5.1267 -3.3223 1.5810 24 9 4.8712 -4.1555 2.6133 25 6 1.8713 -3.7807 0.1741 26 1 -0.4851 0.8400 -0.0004 27 1 -0.7832 -1.8107 -0.3059 28 1 0.1920 -6.7286 0.1727 29 1 2.4675 -7.5736 0.5168 30 1 4.3718 -6.0272 0.6427 31 1 5.7509 -1.0197 -1.3869 32 1 7.2443 -0.9064 0.5650 33 1 6.8457 -2.4146 2.4983 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241540616.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:28 Heat of formation + Delta-G solvation = 48.663151 kcal Electronic energy + Delta-G solvation = -21425.252471 eV Core-core repulsion = 18137.710974 eV Total energy + Delta-G solvation = -3287.541497 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -48.48575 -39.97320 -39.17974 -35.81529 -33.54953 -32.37494 -31.38638 -29.69346 -28.25784 -27.60378 -24.86123 -23.49995 -23.01870 -21.07013 -20.55559 -19.42802 -17.52516 -17.07314 -16.64557 -15.99824 -15.60162 -15.29561 -15.20146 -14.41570 -14.27617 -13.62002 -13.31211 -13.22222 -13.07619 -12.74223 -12.62366 -12.50196 -11.96859 -11.41977 -11.21254 -11.07006 -10.89591 -10.59694 -10.49984 -9.88371 -9.71972 -9.40896 -9.18255 -8.98528 -8.64110 -8.08918 -7.06686 -6.56124 -6.43501 -3.91432 1.21236 1.48237 2.15020 2.59653 3.08975 3.18387 3.22759 4.06622 4.12804 4.23717 4.38567 4.56062 4.64886 4.88683 5.03694 5.14943 5.24589 5.66015 5.67136 5.73399 5.92786 5.98665 6.13275 6.18222 6.27159 6.43608 6.61312 6.76793 7.01673 7.12586 7.20243 7.36435 7.46170 7.59238 7.86555 8.05030 8.36102 8.38896 8.73309 9.07338 9.20713 9.25671 10.56104 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.012246 B = 0.010253 C = 0.006080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2285.901113 B = 2730.230069 C = 4604.405290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.837 5.837 2 C 0.052 3.948 3 Si 0.908 3.092 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.280 1.280 7 C -0.407 4.407 8 H 0.083 0.917 9 C 0.021 3.979 10 C -0.088 4.088 11 N -0.591 5.591 12 H 0.395 0.605 13 C 0.081 3.919 14 C -0.138 4.138 15 C -0.120 4.120 16 C -0.155 4.155 17 C -0.003 4.003 18 C 0.176 3.824 19 N -0.417 5.417 20 C 0.089 3.911 21 C -0.160 4.160 22 C -0.116 4.116 23 C 0.052 3.948 24 F -0.128 7.128 25 C -0.092 4.092 26 H 0.270 0.730 27 H 0.190 0.810 28 H 0.104 0.896 29 H 0.111 0.889 30 H 0.106 0.894 31 H 0.158 0.842 32 H 0.137 0.863 33 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.625 -4.342 1.141 8.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C -0.157 4.157 3 Si 0.734 3.266 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.206 1.206 7 C -0.439 4.439 8 H 0.101 0.899 9 C 0.016 3.984 10 C -0.212 4.212 11 N -0.192 5.192 12 H 0.228 0.772 13 C -0.030 4.030 14 C -0.160 4.160 15 C -0.139 4.139 16 C -0.176 4.176 17 C -0.004 4.004 18 C 0.038 3.962 19 N -0.125 5.125 20 C -0.069 4.069 21 C -0.180 4.180 22 C -0.143 4.143 23 C 0.030 3.970 24 F -0.107 7.107 25 C -0.100 4.100 26 H 0.081 0.919 27 H 0.206 0.794 28 H 0.122 0.878 29 H 0.129 0.871 30 H 0.124 0.876 31 H 0.176 0.824 32 H 0.155 0.845 33 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 6.790 -4.108 0.417 7.947 hybrid contribution 0.413 0.673 0.969 1.250 sum 7.203 -3.435 1.386 8.099 Atomic orbital electron populations 1.69508 1.07062 1.27509 1.42814 1.25632 0.94778 1.00483 0.94789 0.86231 0.80547 0.81745 0.78042 1.18857 1.20328 1.20561 1.19069 0.94664 0.88697 1.41512 0.89942 1.18039 0.90600 0.89301 1.00469 1.23297 0.98543 0.82002 1.17347 1.41529 1.06060 1.06978 1.64634 0.77198 1.18132 0.87515 0.91988 1.05360 1.19893 0.96798 0.91661 1.07635 1.20255 0.91782 0.98069 1.03788 1.20460 0.98097 0.91465 1.07592 1.17560 0.89621 0.90960 1.02298 1.20014 0.93459 0.94149 0.88556 1.68020 1.15123 1.02537 1.26795 1.22826 0.90220 0.96026 0.97824 1.21993 1.01736 1.00021 0.94215 1.21445 0.96956 0.95656 1.00224 1.18742 0.97857 0.93648 0.86757 1.91490 1.93713 1.69382 1.56113 1.19268 0.90357 0.95118 1.05245 0.91912 0.79360 0.87836 0.87062 0.87605 0.82431 0.84471 0.84143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.19 10.40 55.54 0.58 -21.61 16 2 C 0.05 1.37 5.49 -17.33 -0.10 1.27 16 3 Si 0.91 20.03 29.56 -169.99 -5.02 15.00 16 4 H -0.26 -5.67 7.11 56.52 0.40 -5.27 16 5 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 6 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.41 -11.19 8.87 -38.01 -0.34 -11.52 16 8 H 0.08 2.20 4.33 -52.48 -0.23 1.98 16 9 C 0.02 0.58 6.08 -104.83 -0.64 -0.06 16 10 C -0.09 -2.25 10.87 -15.61 -0.17 -2.42 16 11 N -0.59 -12.99 5.99 -9.81 -0.06 -13.05 16 12 H 0.39 7.05 8.96 -40.82 -0.37 6.68 16 13 C 0.08 1.84 7.23 -83.91 -0.61 1.24 16 14 C -0.14 -2.66 10.06 -39.33 -0.40 -3.05 16 15 C -0.12 -2.18 10.00 -39.62 -0.40 -2.57 16 16 C -0.15 -3.07 9.18 -39.19 -0.36 -3.43 16 17 C 0.00 -0.07 5.32 -104.74 -0.56 -0.63 16 18 C 0.18 3.77 5.34 -82.90 -0.44 3.33 16 19 N -0.42 -8.81 8.02 -9.75 -0.08 -8.89 16 20 C 0.09 1.50 10.79 -17.57 -0.19 1.31 16 21 C -0.16 -2.26 10.10 -39.38 -0.40 -2.66 16 22 C -0.12 -1.75 10.15 -39.25 -0.40 -2.15 16 23 C 0.05 0.97 7.23 -38.91 -0.28 0.69 16 24 F -0.13 -2.41 16.42 2.25 0.04 -2.38 16 25 C -0.09 -2.33 6.19 -104.63 -0.65 -2.97 16 26 H 0.27 6.63 8.30 -40.82 -0.34 6.29 16 27 H 0.19 4.97 5.79 -52.49 -0.30 4.67 16 28 H 0.10 1.66 8.06 -52.48 -0.42 1.24 16 29 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 30 H 0.11 1.86 8.06 -52.49 -0.42 1.44 16 31 H 0.16 2.20 8.06 -52.49 -0.42 1.77 16 32 H 0.14 1.40 8.06 -52.49 -0.42 0.98 16 33 H 0.14 1.64 8.06 -52.48 -0.42 1.22 16 LS Contribution 290.33 15.07 4.38 4.38 Total: -1.00 -30.68 290.33 -8.65 -39.33 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -2.57 Total: 10.86 kcal Atomic # 6 Polarization: -17.72 SS G_CDS: -5.91 Total: -23.63 kcal Atomic # 7 Polarization: -44.00 SS G_CDS: 0.44 Total: -43.56 kcal Atomic # 9 Polarization: -2.41 SS G_CDS: 0.04 Total: -2.38 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.00 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -30.68 -8.65 -39.33 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241540616.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.992 kcal (2) G-P(sol) polarization free energy of solvation -30.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds