Wall clock time and date at job start Tue Mar 31 2020 06:39:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30854 * 1 3 3 Si 1.86801 * 119.99649 * 2 1 4 4 H 1.48501 * 109.46998 * 269.99762 * 3 2 1 5 5 H 1.48502 * 109.47449 * 29.99565 * 3 2 1 6 6 H 1.48500 * 109.47077 * 149.99914 * 3 2 1 7 7 C 1.39926 * 120.00390 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99958 * 163.06507 * 7 2 1 9 9 C 1.41318 * 120.00026 * 343.07468 * 7 2 1 10 10 C 1.40815 * 120.19826 * 334.55709 * 9 7 2 11 11 C 1.37641 * 120.04861 * 179.97438 * 10 9 7 12 12 C 1.38470 * 120.47074 * 359.70673 * 11 10 9 13 13 C 1.39692 * 120.40452 * 0.55181 * 12 11 10 14 14 C 1.48087 * 120.03149 * 179.74383 * 13 12 11 15 15 C 1.38035 * 120.67796 * 64.72338 * 14 13 12 16 16 C 1.39264 * 121.42558 * 179.97438 * 15 14 13 17 17 C 1.35589 * 122.53500 * 0.02562 * 16 15 14 18 18 C 1.41078 * 120.46101 * 359.97438 * 17 16 15 19 19 C 1.38283 * 134.86983 * 180.02562 * 18 17 16 20 20 N 1.34042 * 107.88062 * 179.97438 * 19 18 17 21 21 H 0.97002 * 125.03799 * 179.97438 * 20 19 18 22 22 N 1.39992 * 109.92156 * 359.97438 * 20 19 18 23 23 C 1.31685 * 108.96126 * 359.97438 * 22 20 19 24 24 C 1.39271 * 119.93739 * 359.47261 * 13 12 11 25 25 F 1.35096 * 120.23080 * 180.27670 * 24 13 12 26 26 H 0.97003 * 119.99969 * 0.02562 * 1 2 3 27 27 H 1.08001 * 119.97058 * 359.97438 * 10 9 7 28 28 H 1.08004 * 119.76250 * 179.97438 * 11 10 9 29 29 H 1.08002 * 119.79551 * 180.27541 * 12 11 10 30 30 H 1.08005 * 119.29152 * 0.02562 * 15 14 13 31 31 H 1.07999 * 118.72987 * 180.02562 * 16 15 14 32 32 H 1.07998 * 119.76827 * 179.70032 * 17 16 15 33 33 H 1.07998 * 126.06086 * 359.95691 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2424 1.6178 0.0000 4 1 2.4900 2.0464 -1.4001 5 1 1.4398 2.6528 0.6999 6 1 3.5400 1.4403 0.7001 7 6 2.0083 -1.2117 0.0005 8 1 3.0531 -1.2321 -0.2719 9 6 1.3477 -2.4090 0.3574 10 6 0.2172 -2.3713 1.1961 11 6 -0.4242 -3.5392 1.5413 12 6 0.0302 -4.7572 1.0644 13 6 1.1530 -4.8175 0.2355 14 6 1.6352 -6.1251 -0.2652 15 6 0.8577 -6.8830 -1.1176 16 6 1.2959 -8.1144 -1.5983 17 6 2.4994 -8.6415 -1.2635 18 6 3.3692 -7.9455 -0.3978 19 6 4.6247 -8.1903 0.1276 20 7 4.9553 -7.1500 0.9055 21 1 5.7870 -7.0646 1.3973 22 7 3.9224 -6.2051 0.9028 23 6 2.9471 -6.6395 0.1320 24 6 1.8152 -3.6463 -0.1241 25 9 2.8983 -3.6973 -0.9300 26 1 -0.4850 0.8401 -0.0004 27 1 -0.1468 -1.4252 1.5688 28 1 -1.2906 -3.5050 2.1852 29 1 -0.4840 -5.6665 1.3386 30 1 -0.1111 -6.5126 -1.4190 31 1 0.6523 -8.6709 -2.2634 32 1 2.7924 -9.6030 -1.6587 33 1 5.2311 -9.0649 -0.0560 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241622487.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:40 Heat of formation + Delta-G solvation = 62.198478 kcal Electronic energy + Delta-G solvation = -20802.520278 eV Core-core repulsion = 17515.565717 eV Total energy + Delta-G solvation = -3286.954561 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -47.10802 -40.85309 -37.55193 -36.40574 -33.85500 -32.02884 -30.64269 -29.64181 -29.25465 -27.32645 -25.27039 -23.90458 -21.59775 -21.46848 -20.61407 -19.49657 -17.91795 -17.15300 -16.41134 -15.95280 -15.41200 -15.23912 -14.62953 -14.38861 -14.13283 -14.03686 -13.62320 -13.11944 -12.80931 -12.74915 -11.89392 -11.71887 -11.57806 -11.54135 -11.38048 -11.02951 -11.02112 -10.72120 -10.40855 -10.18933 -9.92135 -9.73142 -9.46390 -9.20151 -8.49922 -7.59874 -7.35774 -6.99291 -6.76628 -4.37603 0.87672 2.17665 2.55866 2.72324 2.83555 2.94240 3.07193 3.11299 3.18886 3.93166 4.15186 4.53955 4.55377 4.74224 5.23139 5.36509 5.48524 5.55161 5.68893 5.79164 5.94975 6.02538 6.27603 6.41013 6.61828 6.69636 6.80392 6.91413 6.95776 7.12784 7.18657 7.23265 7.27666 7.53080 7.64666 7.90503 7.94426 8.01149 8.11879 8.55387 8.76773 8.86372 10.15264 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.024074 B = 0.005070 C = 0.004603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.781976 B = 5521.196716 C = 6081.105788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.077 3.923 3 Si 0.911 3.089 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.454 4.454 8 H 0.081 0.919 9 C 0.083 3.917 10 C -0.140 4.140 11 C -0.114 4.114 12 C -0.196 4.196 13 C -0.064 4.064 14 C 0.015 3.985 15 C -0.095 4.095 16 C -0.137 4.137 17 C -0.068 4.068 18 C -0.204 4.204 19 C 0.064 3.936 20 N -0.437 5.437 21 H 0.440 0.560 22 N -0.276 5.276 23 C 0.117 3.883 24 C 0.006 3.994 25 F -0.157 7.157 26 H 0.282 0.718 27 H 0.125 0.875 28 H 0.096 0.904 29 H 0.098 0.902 30 H 0.128 0.872 31 H 0.118 0.882 32 H 0.116 0.884 33 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.562 -12.769 -0.092 13.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.141 4.141 3 Si 0.735 3.265 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.184 1.184 7 C -0.484 4.484 8 H 0.099 0.901 9 C 0.080 3.920 10 C -0.160 4.160 11 C -0.133 4.133 12 C -0.216 4.216 13 C -0.066 4.066 14 C 0.012 3.988 15 C -0.117 4.117 16 C -0.157 4.157 17 C -0.088 4.088 18 C -0.214 4.214 19 C -0.091 4.091 20 N -0.138 5.138 21 H 0.284 0.716 22 N -0.102 5.102 23 C -0.040 4.040 24 C -0.015 4.015 25 F -0.136 7.136 26 H 0.093 0.907 27 H 0.143 0.857 28 H 0.114 0.886 29 H 0.116 0.884 30 H 0.146 0.854 31 H 0.136 0.864 32 H 0.134 0.866 33 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 4.809 -11.614 0.649 12.586 hybrid contribution 0.765 0.094 -0.457 0.896 sum 5.573 -11.519 0.192 12.798 Atomic orbital electron populations 1.69815 1.07544 1.29400 1.35066 1.25877 0.94757 1.01332 0.92138 0.86262 0.80641 0.80261 0.79333 1.19388 1.19981 1.18394 1.19463 0.98011 0.90826 1.40062 0.90097 1.17550 0.92817 0.90687 0.90910 1.21230 0.97970 0.97279 0.99480 1.20628 0.99292 0.92860 1.00518 1.20244 0.99029 0.96780 1.05522 1.18143 0.97703 0.89176 1.01534 1.18888 0.88918 0.93995 0.96980 1.20964 0.99736 0.94222 0.96771 1.20322 0.96726 0.96474 1.02139 1.19983 0.93384 0.98573 0.96887 1.19581 0.96141 0.98175 1.07552 1.22540 0.96663 0.93961 0.95951 1.46431 1.17374 1.14144 1.35854 0.71644 1.77744 0.97260 1.10741 1.24477 1.22004 0.94020 0.92913 0.95099 1.17857 0.89879 0.93681 1.00051 1.91277 1.53334 1.97232 1.71716 0.90715 0.85681 0.88554 0.88374 0.85401 0.86419 0.86570 0.80033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.47 10.96 55.55 0.61 -19.86 16 2 C 0.08 1.96 5.15 -17.34 -0.09 1.87 16 3 Si 0.91 19.08 29.59 -169.99 -5.03 14.05 16 4 H -0.27 -5.57 7.11 56.52 0.40 -5.16 16 5 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 6 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 7 C -0.45 -12.60 8.77 -37.78 -0.33 -12.93 16 8 H 0.08 2.25 7.74 -52.49 -0.41 1.84 16 9 C 0.08 2.32 5.57 -106.80 -0.59 1.72 16 10 C -0.14 -3.64 8.68 -38.83 -0.34 -3.98 16 11 C -0.11 -2.66 10.00 -39.71 -0.40 -3.05 16 12 C -0.20 -4.45 9.74 -38.95 -0.38 -4.83 16 13 C -0.06 -1.55 5.39 -104.93 -0.57 -2.11 16 14 C 0.02 0.32 5.14 -102.64 -0.53 -0.21 16 15 C -0.10 -1.68 9.66 -39.27 -0.38 -2.06 16 16 C -0.14 -1.98 9.83 -40.15 -0.39 -2.38 16 17 C -0.07 -0.94 10.03 -39.45 -0.40 -1.33 16 18 C -0.20 -3.23 6.34 -105.20 -0.67 -3.89 16 19 C 0.06 0.77 12.08 -16.57 -0.20 0.57 16 20 N -0.44 -5.92 7.19 30.86 0.22 -5.70 16 21 H 0.44 4.04 8.96 -182.68 -1.64 2.40 16 22 N -0.28 -5.50 12.69 34.31 0.44 -5.06 16 23 C 0.12 2.35 7.37 -81.04 -0.60 1.76 16 24 C 0.01 0.15 7.27 -38.25 -0.28 -0.13 16 25 F -0.16 -4.29 16.19 2.25 0.04 -4.25 16 26 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 27 H 0.13 3.29 6.18 -52.49 -0.32 2.97 16 28 H 0.10 1.94 8.06 -52.48 -0.42 1.52 16 29 H 0.10 1.97 8.06 -52.49 -0.42 1.55 16 30 H 0.13 2.10 8.06 -52.48 -0.42 1.68 16 31 H 0.12 1.32 8.06 -52.49 -0.42 0.89 16 32 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 33 H 0.18 1.19 8.06 -52.49 -0.42 0.76 16 LS Contribution 298.48 15.07 4.50 4.50 Total: -1.00 -32.66 298.48 -9.40 -42.07 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -4.04 Total: 5.25 kcal Atomic # 6 Polarization: -24.86 SS G_CDS: -6.13 Total: -30.99 kcal Atomic # 7 Polarization: -31.89 SS G_CDS: 1.27 Total: -30.62 kcal Atomic # 9 Polarization: -4.29 SS G_CDS: 0.04 Total: -4.25 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -5.03 Total: 14.05 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -32.66 -9.40 -42.07 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241622487.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.265 kcal (2) G-P(sol) polarization free energy of solvation -32.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds