Wall clock time and date at job start Tue Mar 31 2020 06:39:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30869 * 1 3 3 Si 1.86799 * 120.00093 * 2 1 4 4 H 1.48497 * 109.47155 * 270.00171 * 3 2 1 5 5 H 1.48499 * 109.46933 * 30.00181 * 3 2 1 6 6 H 1.48501 * 109.47028 * 150.00234 * 3 2 1 7 7 C 1.39892 * 119.99830 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99813 * 162.93807 * 7 2 1 9 9 C 1.41325 * 120.00277 * 342.93612 * 7 2 1 10 10 C 1.40483 * 120.19516 * 334.64832 * 9 7 2 11 11 C 1.38830 * 119.63988 * 179.97438 * 10 9 7 12 12 C 1.48080 * 119.97793 * 180.02562 * 11 10 9 13 13 C 1.38057 * 120.68139 * 309.99984 * 12 11 10 14 14 C 1.39248 * 121.42447 * 180.02562 * 13 12 11 15 15 C 1.35612 * 122.53514 * 359.95338 * 14 13 12 16 16 C 1.41062 * 120.46334 * 0.02562 * 15 14 13 17 17 C 1.38283 * 134.87092 * 179.97438 * 16 15 14 18 18 N 1.34041 * 107.87984 * 180.02562 * 17 16 15 19 19 H 0.97007 * 125.03792 * 179.97438 * 18 17 16 20 20 N 1.39983 * 109.92195 * 0.02562 * 18 17 16 21 21 C 1.31674 * 108.96339 * 359.97438 * 20 18 17 22 22 C 1.39986 * 120.04442 * 0.27758 * 11 10 9 23 23 C 1.38185 * 120.39819 * 359.44860 * 22 11 10 24 24 C 1.38107 * 120.36483 * 0.54919 * 23 22 11 25 25 F 1.35096 * 120.02592 * 179.74597 * 24 23 22 26 26 H 0.96996 * 120.00090 * 359.97438 * 1 2 3 27 27 H 1.08002 * 120.17787 * 359.96344 * 10 9 7 28 28 H 1.08005 * 119.29007 * 0.02562 * 13 12 11 29 29 H 1.07991 * 118.73404 * 179.97438 * 14 13 12 30 30 H 1.08001 * 119.76718 * 179.74230 * 15 14 13 31 31 H 1.07995 * 126.06142 * 359.97438 * 17 16 15 32 32 H 1.08006 * 119.80136 * 179.70032 * 22 11 10 33 33 H 1.08004 * 119.81469 * 180.25400 * 23 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 2.4902 2.0464 -1.4000 5 1 1.4402 2.6526 0.7001 6 1 3.5403 1.4401 0.7000 7 6 2.0081 -1.2115 -0.0005 8 1 3.0525 -1.2320 -0.2750 9 6 1.3482 -2.4087 0.3581 10 6 0.2210 -2.3705 1.1956 11 6 -0.4188 -3.5535 1.5402 12 6 -1.6079 -3.5219 2.4221 13 6 -1.5826 -2.8257 3.6140 14 6 -2.6916 -2.7860 4.4552 15 6 -3.8535 -3.4203 4.1607 16 6 -3.9821 -4.1591 2.9659 17 6 -4.9924 -4.9003 2.3812 18 7 -4.5292 -5.3833 1.2198 19 1 -5.0349 -5.9393 0.6065 20 7 -3.2070 -4.9675 1.0238 21 6 -2.8345 -4.2286 2.0480 22 6 0.0627 -4.7766 1.0587 23 6 1.1679 -4.8157 0.2302 24 6 1.8171 -3.6490 -0.1232 25 9 2.9001 -3.6957 -0.9295 26 1 -0.4850 0.8400 0.0004 27 1 -0.1458 -1.4260 1.5696 28 1 -0.6834 -2.3004 3.9001 29 1 -2.6238 -2.2285 5.3776 30 1 -4.6847 -3.3632 4.8480 31 1 -5.9795 -5.0620 2.7883 32 1 -0.4352 -5.6949 1.3331 33 1 1.5289 -5.7642 -0.1392 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241624119.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:18 Heat of formation + Delta-G solvation = 59.866165 kcal Electronic energy + Delta-G solvation = -20625.875909 eV Core-core repulsion = 17338.820211 eV Total energy + Delta-G solvation = -3287.055698 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -47.18664 -40.86483 -37.67742 -36.28673 -33.81628 -32.03852 -30.64218 -29.76945 -29.26804 -27.17784 -25.34209 -23.81873 -21.73412 -21.21677 -20.93656 -19.32847 -17.89922 -17.12673 -16.48394 -15.99385 -15.48029 -15.13943 -14.64994 -14.41709 -14.05728 -13.97075 -13.77016 -13.02950 -12.79545 -12.60245 -11.91600 -11.90697 -11.59126 -11.57809 -11.29353 -11.10720 -11.03576 -10.73105 -10.38329 -10.26785 -9.90741 -9.71972 -9.50084 -9.22675 -8.48440 -7.62715 -7.54505 -6.86393 -6.71095 -4.39279 0.87818 2.18329 2.49428 2.77115 2.86502 2.93923 3.07237 3.11415 3.19432 3.92256 4.18988 4.52238 4.57231 4.76630 5.26078 5.40867 5.48458 5.56490 5.72527 5.82039 5.96307 6.08445 6.18174 6.43031 6.60637 6.70333 6.83536 6.92775 6.96217 7.14347 7.20160 7.25906 7.27704 7.49837 7.62378 7.88396 7.93334 7.98557 8.09466 8.51415 8.74842 8.83240 10.14115 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.017615 B = 0.005575 C = 0.004705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.212085 B = 5021.610008 C = 5950.040317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.076 3.924 3 Si 0.911 3.089 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.259 1.259 7 C -0.455 4.455 8 H 0.083 0.917 9 C 0.083 3.917 10 C -0.118 4.118 11 C -0.052 4.052 12 C 0.020 3.980 13 C -0.100 4.100 14 C -0.131 4.131 15 C -0.075 4.075 16 C -0.201 4.201 17 C 0.062 3.938 18 N -0.439 5.439 19 H 0.439 0.561 20 N -0.281 5.281 21 C 0.115 3.885 22 C -0.184 4.184 23 C -0.125 4.125 24 C -0.025 4.025 25 F -0.164 7.164 26 H 0.283 0.717 27 H 0.130 0.870 28 H 0.129 0.871 29 H 0.117 0.883 30 H 0.115 0.885 31 H 0.182 0.818 32 H 0.097 0.903 33 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.185 -4.658 7.183 13.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.142 4.142 3 Si 0.735 3.265 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.183 1.183 7 C -0.484 4.484 8 H 0.101 0.899 9 C 0.080 3.920 10 C -0.137 4.137 11 C -0.053 4.053 12 C 0.017 3.983 13 C -0.122 4.122 14 C -0.151 4.151 15 C -0.095 4.095 16 C -0.212 4.212 17 C -0.093 4.093 18 N -0.140 5.140 19 H 0.283 0.717 20 N -0.107 5.107 21 C -0.042 4.042 22 C -0.203 4.203 23 C -0.144 4.144 24 C -0.045 4.045 25 F -0.143 7.143 26 H 0.094 0.906 27 H 0.148 0.852 28 H 0.147 0.853 29 H 0.135 0.865 30 H 0.133 0.867 31 H 0.199 0.801 32 H 0.115 0.885 33 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -9.977 -5.004 5.980 12.662 hybrid contribution -0.243 0.730 0.146 0.783 sum -10.220 -4.274 6.126 12.659 Atomic orbital electron populations 1.69830 1.07522 1.29514 1.34564 1.25895 0.94752 1.01386 0.92179 0.86263 0.80637 0.80272 0.79353 1.19416 1.19967 1.18307 1.19462 0.98128 0.90788 1.40041 0.89938 1.17513 0.92529 0.90983 0.90973 1.21295 0.97210 0.96120 0.99095 1.18367 0.94001 0.94116 0.98773 1.19025 0.89530 0.95581 0.94139 1.20991 0.98815 0.99094 0.93291 1.20335 0.93245 1.01437 1.00082 1.19957 0.97684 0.97406 0.94453 1.19579 0.94106 1.07858 0.99609 1.22527 0.99307 0.98632 0.88845 1.46409 1.11614 1.39190 1.16798 0.71715 1.77698 0.91085 1.20241 1.21677 1.22030 0.94606 0.96072 0.91503 1.20150 0.99520 0.95719 1.04945 1.20390 0.97633 0.95678 1.00746 1.17949 0.90777 0.94884 1.00921 1.91264 1.53565 1.97345 1.72118 0.90631 0.85200 0.85344 0.86507 0.86681 0.80114 0.88482 0.88079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.40 10.97 55.54 0.61 -19.79 16 2 C 0.08 1.92 5.15 -17.34 -0.09 1.83 16 3 Si 0.91 18.76 29.59 -169.99 -5.03 13.72 16 4 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 5 H -0.27 -5.46 7.11 56.52 0.40 -5.05 16 6 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 7 C -0.46 -12.34 8.77 -37.79 -0.33 -12.68 16 8 H 0.08 2.21 7.74 -52.49 -0.41 1.81 16 9 C 0.08 2.27 5.57 -106.80 -0.59 1.67 16 10 C -0.12 -3.04 8.13 -38.52 -0.31 -3.35 16 11 C -0.05 -1.23 5.52 -104.99 -0.58 -1.81 16 12 C 0.02 0.42 5.63 -102.63 -0.58 -0.16 16 13 C -0.10 -1.80 9.44 -39.27 -0.37 -2.17 16 14 C -0.13 -1.93 9.83 -40.14 -0.39 -2.33 16 15 C -0.07 -1.03 10.03 -39.45 -0.40 -1.43 16 16 C -0.20 -3.12 6.34 -105.21 -0.67 -3.78 16 17 C 0.06 0.72 12.08 -16.57 -0.20 0.52 16 18 N -0.44 -5.63 7.19 30.86 0.22 -5.41 16 19 H 0.44 3.72 8.96 -182.68 -1.64 2.09 16 20 N -0.28 -5.28 12.68 34.31 0.44 -4.84 16 21 C 0.11 2.23 7.28 -81.04 -0.59 1.64 16 22 C -0.18 -4.28 9.57 -38.95 -0.37 -4.65 16 23 C -0.13 -2.99 9.99 -39.65 -0.40 -3.39 16 24 C -0.03 -0.66 7.31 -38.56 -0.28 -0.94 16 25 F -0.16 -4.27 16.71 2.25 0.04 -4.23 16 26 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 27 H 0.13 3.40 6.17 -52.49 -0.32 3.08 16 28 H 0.13 2.21 8.02 -52.48 -0.42 1.79 16 29 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 30 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 31 H 0.18 1.15 8.06 -52.49 -0.42 0.72 16 32 H 0.10 2.12 8.06 -52.48 -0.42 1.70 16 33 H 0.10 2.14 8.06 -52.48 -0.42 1.72 16 LS Contribution 298.56 15.07 4.50 4.50 Total: -1.00 -31.81 298.56 -9.42 -41.23 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -4.04 Total: 5.83 kcal Atomic # 6 Polarization: -24.86 SS G_CDS: -6.15 Total: -31.02 kcal Atomic # 7 Polarization: -31.30 SS G_CDS: 1.27 Total: -30.04 kcal Atomic # 9 Polarization: -4.27 SS G_CDS: 0.04 Total: -4.23 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.03 Total: 13.72 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -31.81 -9.42 -41.23 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241624119.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.092 kcal (2) G-P(sol) polarization free energy of solvation -31.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds