Wall clock time and date at job start Tue Mar 31 2020 06:39:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30872 * 1 3 3 Si 1.86804 * 120.00133 * 2 1 4 4 H 1.48505 * 109.46987 * 239.99670 * 3 2 1 5 5 H 1.48492 * 109.47132 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47025 * 120.00311 * 3 2 1 7 7 C 1.39876 * 119.99895 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99839 * 197.77264 * 7 2 1 9 9 C 1.41344 * 119.99983 * 17.76781 * 7 2 1 10 10 C 1.40882 * 120.14715 * 204.44388 * 9 7 2 11 11 C 1.37583 * 120.05240 * 180.02562 * 10 9 7 12 12 C 1.38718 * 120.36801 * 359.97438 * 11 10 9 13 13 F 1.35091 * 119.85526 * 179.97438 * 12 11 10 14 14 C 1.40163 * 120.29241 * 0.02562 * 12 11 10 15 15 C 1.48061 * 120.03169 * 179.97438 * 14 12 11 16 16 C 1.38069 * 120.68231 * 244.99905 * 15 14 12 17 17 C 1.39235 * 121.42096 * 180.02562 * 16 15 14 18 18 C 1.35615 * 122.53944 * 359.97438 * 17 16 15 19 19 C 1.41065 * 120.46405 * 0.02562 * 18 17 16 20 20 C 1.38278 * 134.87255 * 179.97438 * 19 18 17 21 21 N 1.34040 * 107.88254 * 180.02562 * 20 19 18 22 22 H 0.97005 * 125.03890 * 180.02562 * 21 20 19 23 23 N 1.39989 * 109.91911 * 0.02562 * 21 20 19 24 24 C 1.31671 * 108.96142 * 359.97438 * 23 21 20 25 25 C 1.38835 * 119.93858 * 0.25222 * 14 12 11 26 26 H 0.97001 * 119.99449 * 0.02562 * 1 2 3 27 27 H 1.08004 * 119.97676 * 0.02562 * 10 9 7 28 28 H 1.08005 * 119.81487 * 179.97438 * 11 10 9 29 29 H 1.08001 * 119.28886 * 0.04505 * 16 15 14 30 30 H 1.08000 * 118.73044 * 179.97438 * 17 16 15 31 31 H 1.07999 * 119.76692 * 179.72289 * 18 17 16 32 32 H 1.08007 * 126.06089 * 0.03206 * 20 19 18 33 33 H 1.07993 * 120.18361 * 179.70067 * 25 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.0966 1.6963 -1.2125 5 1 1.2779 2.7464 0.0006 6 1 3.0966 1.6963 1.2125 7 6 2.0081 -1.2114 0.0005 8 1 3.0494 -1.2336 0.2861 9 6 1.3519 -2.4064 -0.3725 10 6 1.8278 -3.6490 0.0904 11 6 1.1879 -4.8111 -0.2743 12 6 0.0722 -4.7687 -1.0977 13 9 -0.5478 -5.9161 -1.4497 14 6 -0.4139 -3.5406 -1.5668 15 6 -1.6048 -3.5021 -2.4457 16 6 -1.5035 -3.0620 -3.7505 17 6 -2.6132 -3.0189 -4.5902 18 6 -3.8496 -3.4022 -4.1855 19 6 -4.0593 -3.8676 -2.8705 20 6 -5.1552 -4.3202 -2.1589 21 7 -4.7426 -4.6327 -0.9225 22 1 -5.3114 -4.9763 -0.2158 23 7 -3.3692 -4.3897 -0.8023 24 6 -2.9143 -3.9288 -1.9487 25 6 0.2256 -2.3607 -1.2112 26 1 -0.4849 0.8401 -0.0004 27 1 2.6956 -3.6895 0.7321 28 1 1.5562 -5.7617 0.0824 29 1 -0.5426 -2.7448 -4.1280 30 1 -2.4845 -2.6667 -5.6031 31 1 -4.6803 -3.3460 -4.8733 32 1 -6.1646 -4.4067 -2.5331 33 1 -0.1427 -1.4127 -1.5743 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241624293.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:44 Heat of formation + Delta-G solvation = 61.407588 kcal Electronic energy + Delta-G solvation = -20874.719592 eV Core-core repulsion = 17587.730735 eV Total energy + Delta-G solvation = -3286.988857 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -47.34989 -40.77905 -37.59074 -36.35674 -33.64579 -32.19036 -30.63619 -29.47025 -29.30227 -27.42010 -25.04539 -23.84935 -21.63733 -21.34155 -20.86325 -19.34503 -17.86299 -17.14091 -16.42616 -16.06008 -15.42576 -15.22080 -14.63004 -14.35691 -14.22169 -13.95159 -13.68437 -13.06467 -12.81522 -12.52608 -11.97073 -11.89662 -11.61303 -11.37938 -11.33989 -11.09664 -11.05026 -10.83873 -10.27590 -10.14619 -10.01046 -9.72175 -9.43367 -9.13625 -8.42407 -7.68768 -7.33023 -6.96049 -6.79290 -4.37689 0.95302 2.25401 2.56436 2.76977 2.87648 2.99056 3.05950 3.07700 3.15690 3.90561 4.22943 4.48789 4.62613 4.81097 5.29852 5.43117 5.53303 5.61242 5.76792 5.82055 5.90237 6.09626 6.15470 6.43883 6.74678 6.77639 6.88654 6.94149 6.99895 7.12593 7.18205 7.29614 7.34226 7.42861 7.69527 7.81843 7.95835 7.99551 8.16998 8.50998 8.80708 8.84793 10.14355 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.017432 B = 0.005850 C = 0.005128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.830626 B = 4785.265590 C = 5458.543209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.075 3.925 3 Si 0.909 3.091 4 H -0.262 1.262 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.458 4.458 8 H 0.081 0.919 9 C 0.100 3.900 10 C -0.200 4.200 11 C -0.122 4.122 12 C -0.017 4.017 13 F -0.168 7.168 14 C -0.066 4.066 15 C 0.019 3.981 16 C -0.096 4.096 17 C -0.135 4.135 18 C -0.070 4.070 19 C -0.203 4.203 20 C 0.063 3.937 21 N -0.438 5.438 22 H 0.439 0.561 23 N -0.276 5.276 24 C 0.119 3.881 25 C -0.118 4.118 26 H 0.283 0.717 27 H 0.102 0.898 28 H 0.101 0.899 29 H 0.128 0.872 30 H 0.117 0.883 31 H 0.116 0.884 32 H 0.182 0.818 33 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.792 -3.146 -5.867 11.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.143 4.143 3 Si 0.733 3.267 4 H -0.187 1.187 5 H -0.203 1.203 6 H -0.190 1.190 7 C -0.488 4.488 8 H 0.099 0.901 9 C 0.097 3.903 10 C -0.220 4.220 11 C -0.141 4.141 12 C -0.037 4.037 13 F -0.147 7.147 14 C -0.067 4.067 15 C 0.016 3.984 16 C -0.118 4.118 17 C -0.155 4.155 18 C -0.090 4.090 19 C -0.213 4.213 20 C -0.093 4.093 21 N -0.139 5.139 22 H 0.283 0.717 23 N -0.102 5.102 24 C -0.038 4.038 25 C -0.137 4.137 26 H 0.094 0.906 27 H 0.120 0.880 28 H 0.119 0.881 29 H 0.146 0.854 30 H 0.135 0.865 31 H 0.134 0.866 32 H 0.199 0.801 33 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -8.707 -3.348 -4.617 10.408 hybrid contribution -0.463 0.593 -0.321 0.818 sum -9.170 -2.755 -4.939 10.773 Atomic orbital electron populations 1.69833 1.07543 1.29557 1.34451 1.25927 0.94735 1.01405 0.92265 0.86349 0.80131 0.80142 0.80044 1.18692 1.20328 1.18983 1.19500 0.98169 0.90995 1.40097 0.90133 1.17552 0.91254 0.92280 0.89174 1.20883 1.03382 0.91988 1.05760 1.20436 0.95951 0.98189 0.99513 1.17250 0.98072 0.80248 1.08152 1.91286 1.82892 1.48849 1.91652 1.18354 0.95127 0.92948 1.00318 1.18861 0.88380 0.98156 0.92968 1.20953 0.98904 0.99812 0.92136 1.20309 0.92543 1.02948 0.99666 1.19969 0.97060 0.99155 0.92824 1.19571 0.92362 1.12454 0.96949 1.22517 0.99143 1.01129 0.86490 1.46413 1.08585 1.48011 1.10892 0.71737 1.77716 0.87326 1.24687 1.20513 1.21973 0.94206 0.97151 0.90446 1.21346 0.97819 0.95281 0.99283 0.90625 0.87989 0.88070 0.85437 0.86458 0.86625 0.80097 0.85263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.29 10.96 55.54 0.61 -19.68 16 2 C 0.08 1.85 5.13 -17.35 -0.09 1.76 16 3 Si 0.91 18.30 29.59 -169.99 -5.03 13.27 16 4 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 5 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 6 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 7 C -0.46 -11.85 9.04 -37.79 -0.34 -12.19 16 8 H 0.08 1.98 7.91 -52.49 -0.41 1.56 16 9 C 0.10 2.63 5.57 -106.86 -0.60 2.04 16 10 C -0.20 -4.91 9.78 -38.82 -0.38 -5.29 16 11 C -0.12 -2.89 9.99 -39.64 -0.40 -3.29 16 12 C -0.02 -0.43 7.29 -38.68 -0.28 -0.71 16 13 F -0.17 -4.11 16.73 2.25 0.04 -4.07 16 14 C -0.07 -1.64 5.39 -104.92 -0.57 -2.21 16 15 C 0.02 0.43 5.14 -102.64 -0.53 -0.10 16 16 C -0.10 -1.81 9.65 -39.27 -0.38 -2.19 16 17 C -0.14 -2.09 9.83 -40.15 -0.39 -2.49 16 18 C -0.07 -1.03 10.03 -39.45 -0.40 -1.42 16 19 C -0.20 -3.40 6.34 -105.21 -0.67 -4.07 16 20 C 0.06 0.80 12.08 -16.57 -0.20 0.60 16 21 N -0.44 -6.26 7.19 30.86 0.22 -6.04 16 22 H 0.44 4.30 8.96 -182.68 -1.64 2.67 16 23 N -0.28 -5.73 12.68 34.31 0.44 -5.29 16 24 C 0.12 2.52 7.38 -81.04 -0.60 1.93 16 25 C -0.12 -3.07 8.37 -38.51 -0.32 -3.39 16 26 H 0.28 6.67 8.30 -40.82 -0.34 6.33 16 27 H 0.10 2.29 8.06 -52.48 -0.42 1.87 16 28 H 0.10 2.13 8.06 -52.48 -0.42 1.70 16 29 H 0.13 2.25 8.06 -52.49 -0.42 1.82 16 30 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 31 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 32 H 0.18 1.32 8.06 -52.48 -0.42 0.89 16 33 H 0.13 3.45 6.16 -52.49 -0.32 3.13 16 LS Contribution 299.16 15.07 4.51 4.51 Total: -1.00 -31.89 299.16 -9.40 -41.29 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -4.05 Total: 7.05 kcal Atomic # 6 Polarization: -24.90 SS G_CDS: -6.13 Total: -31.03 kcal Atomic # 7 Polarization: -32.28 SS G_CDS: 1.27 Total: -31.01 kcal Atomic # 9 Polarization: -4.11 SS G_CDS: 0.04 Total: -4.07 kcal Atomic # 14 Polarization: 18.30 SS G_CDS: -5.03 Total: 13.27 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -31.89 -9.40 -41.29 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241624293.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.699 kcal (2) G-P(sol) polarization free energy of solvation -31.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds