Wall clock time and date at job start Tue Mar 31 2020 06:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30845 * 1 3 3 Si 1.86806 * 120.00404 * 2 1 4 4 H 1.48497 * 109.46951 * 275.19726 * 3 2 1 5 5 H 1.48501 * 109.46910 * 35.19284 * 3 2 1 6 6 H 1.48494 * 109.47223 * 155.19566 * 3 2 1 7 7 C 1.39974 * 119.99833 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99700 * 30.09110 * 7 2 1 9 9 C 1.40621 * 119.99905 * 210.08523 * 7 2 1 10 10 C 1.41174 * 120.63713 * 34.63513 * 9 7 2 11 11 F 1.35096 * 120.11360 * 359.95303 * 10 9 7 12 12 C 1.37495 * 119.78057 * 179.97438 * 10 9 7 13 13 C 1.38827 * 121.18374 * 0.02562 * 12 10 9 14 14 C 1.37755 * 121.36119 * 359.71485 * 13 12 10 15 15 C 1.39594 * 120.09687 * 0.56425 * 14 13 12 16 16 C 1.47237 * 120.57668 * 179.71964 * 15 14 13 17 17 C 1.38798 * 120.71864 * 64.71967 * 16 15 14 18 18 C 1.38864 * 121.34918 * 179.97438 * 17 16 15 19 19 C 1.35925 * 122.57655 * 0.04735 * 18 17 16 20 20 C 1.40952 * 120.56080 * 359.97438 * 19 18 17 21 21 C 1.38386 * 134.85750 * 180.02562 * 20 19 18 22 22 N 1.34079 * 107.83328 * 179.97438 * 21 20 19 23 23 H 0.97000 * 125.04276 * 180.02562 * 22 21 20 24 24 N 1.39978 * 109.91161 * 359.97438 * 22 21 20 25 25 C 1.31519 * 109.01395 * 359.97438 * 24 22 21 26 26 H 0.97008 * 120.00146 * 359.97438 * 1 2 3 27 27 H 1.07998 * 119.40748 * 179.97438 * 12 10 9 28 28 H 1.08009 * 119.31788 * 179.97438 * 13 12 10 29 29 H 1.07995 * 119.95416 * 180.30788 * 14 13 12 30 30 H 1.07997 * 119.32557 * 359.97438 * 17 16 15 31 31 H 1.07999 * 118.71210 * 180.02562 * 18 17 16 32 32 H 1.08003 * 119.71931 * 179.70274 * 19 18 17 33 33 H 1.08003 * 126.08516 * 359.91117 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 2.3803 2.1098 -1.3943 5 1 1.4993 2.6185 0.8069 6 1 3.5907 1.4109 0.5873 7 6 2.0083 -1.2122 0.0005 8 1 1.5774 -2.0847 -0.4680 9 6 3.2724 -1.2940 0.6111 10 6 3.5611 -0.5427 1.7709 11 9 2.6207 0.2660 2.3062 12 6 4.8029 -0.6365 2.3537 13 6 5.7862 -1.4597 1.8220 14 6 5.5546 -2.2176 0.6953 15 6 4.3153 -2.1601 0.0555 16 6 4.0583 -2.9609 -1.1530 17 6 4.0528 -4.3478 -1.0966 18 6 3.8115 -5.1159 -2.2280 19 6 3.5693 -4.5665 -3.4475 20 6 3.5532 -3.1668 -3.6126 21 6 3.3453 -2.3123 -4.6811 22 7 3.4534 -1.0549 -4.2284 23 1 3.3520 -0.2570 -4.7706 24 7 3.7330 -1.0644 -2.8568 25 6 3.8015 -2.3107 -2.4422 26 1 -0.4851 0.8401 0.0004 27 1 5.0174 -0.0588 3.2406 28 1 6.7514 -1.5101 2.3042 29 1 6.3344 -2.8540 0.3038 30 1 4.2400 -4.8396 -0.1535 31 1 3.8167 -6.1919 -2.1355 32 1 3.3920 -5.2081 -4.2981 33 1 3.1347 -2.6060 -5.6989 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241625959.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:21 Heat of formation + Delta-G solvation = 73.583618 kcal Electronic energy + Delta-G solvation = -21444.539093 eV Core-core repulsion = 18158.078228 eV Total energy + Delta-G solvation = -3286.460864 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -47.58092 -40.58862 -37.47047 -36.05051 -33.71009 -32.00426 -30.42151 -30.19495 -29.17045 -27.42327 -25.17552 -23.66462 -21.44129 -21.22869 -20.74672 -19.16196 -17.78506 -17.58324 -16.42941 -15.88229 -15.56759 -14.88289 -14.80978 -14.31508 -14.23016 -13.99100 -13.68752 -13.17637 -12.86281 -12.67725 -12.19731 -11.81913 -11.50732 -11.39207 -11.21083 -11.11082 -10.91051 -10.54783 -10.26856 -10.09481 -9.78666 -9.58449 -9.43845 -9.13057 -8.26440 -7.62150 -7.47773 -7.07415 -6.80582 -4.44609 1.10082 2.34071 2.52349 2.60078 3.00392 3.15077 3.20229 3.30994 3.36737 4.06450 4.35286 4.46079 4.81360 4.95658 5.19136 5.45974 5.58203 5.77221 5.78852 5.92414 5.96443 6.05731 6.20252 6.29800 6.46232 6.69921 6.74461 6.94907 7.04381 7.12002 7.18297 7.35455 7.42627 7.50347 7.53616 7.69492 7.76362 8.02845 8.21138 8.26972 8.60340 8.68822 9.90337 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.016141 B = 0.008557 C = 0.006675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.317590 B = 3271.205073 C = 4193.487230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.776 5.776 2 C 0.098 3.902 3 Si 0.922 3.078 4 H -0.288 1.288 5 H -0.282 1.282 6 H -0.242 1.242 7 C -0.418 4.418 8 H 0.095 0.905 9 C 0.088 3.912 10 C -0.030 4.030 11 F -0.153 7.153 12 C -0.101 4.101 13 C -0.238 4.238 14 C -0.062 4.062 15 C -0.159 4.159 16 C 0.055 3.945 17 C -0.118 4.118 18 C -0.133 4.133 19 C -0.078 4.078 20 C -0.203 4.203 21 C 0.056 3.944 22 N -0.440 5.440 23 H 0.437 0.563 24 N -0.266 5.266 25 C 0.123 3.877 26 H 0.287 0.713 27 H 0.101 0.899 28 H 0.099 0.901 29 H 0.100 0.900 30 H 0.122 0.878 31 H 0.112 0.888 32 H 0.111 0.889 33 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.538 -4.178 -7.890 10.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.126 4.126 3 Si 0.749 3.251 4 H -0.216 1.216 5 H -0.208 1.208 6 H -0.166 1.166 7 C -0.443 4.443 8 H 0.113 0.887 9 C 0.084 3.916 10 C -0.050 4.050 11 F -0.132 7.132 12 C -0.120 4.120 13 C -0.257 4.257 14 C -0.080 4.080 15 C -0.160 4.160 16 C 0.052 3.948 17 C -0.140 4.140 18 C -0.153 4.153 19 C -0.099 4.099 20 C -0.213 4.213 21 C -0.099 4.099 22 N -0.141 5.141 23 H 0.280 0.720 24 N -0.092 5.092 25 C -0.034 4.034 26 H 0.098 0.902 27 H 0.119 0.881 28 H 0.117 0.883 29 H 0.118 0.882 30 H 0.140 0.860 31 H 0.130 0.870 32 H 0.129 0.871 33 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 5.284 -2.799 -7.518 9.606 hybrid contribution -0.277 0.496 -0.563 0.800 sum 5.006 -2.303 -8.081 9.782 Atomic orbital electron populations 1.69802 1.08712 1.30821 1.30367 1.26283 0.94476 1.02407 0.89475 0.86095 0.82953 0.78907 0.77165 1.21555 1.20834 1.16566 1.19110 0.97849 0.97638 1.29704 0.88716 1.18509 0.92190 0.90757 0.90099 1.17492 0.87641 1.02484 0.97406 1.91021 1.65100 1.71486 1.85631 1.20493 0.92476 0.99620 0.99384 1.19870 0.98712 1.05680 1.01450 1.20645 0.94964 0.97608 0.94781 1.19158 0.93424 1.07009 0.96450 1.18645 0.96863 0.91132 0.88116 1.20971 1.02734 0.92062 0.98260 1.20232 1.03314 0.99091 0.92618 1.19939 1.01304 0.91400 0.97211 1.19570 1.14148 0.94975 0.92600 1.22491 1.03225 0.85135 0.99026 1.46464 1.51866 1.07131 1.08675 0.71971 1.77672 1.25169 1.19009 0.87323 1.22034 0.97811 0.89539 0.94020 0.90234 0.88132 0.88268 0.88195 0.85983 0.86956 0.87059 0.80458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -21.12 13.93 55.55 0.77 -20.35 16 2 C 0.10 2.66 4.72 -17.32 -0.08 2.58 16 3 Si 0.92 22.95 25.32 -169.99 -4.30 18.65 16 4 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.24 -6.23 5.49 56.52 0.31 -5.92 16 7 C -0.42 -11.54 8.37 -38.03 -0.32 -11.86 16 8 H 0.10 2.79 7.78 -52.49 -0.41 2.38 16 9 C 0.09 2.32 5.04 -104.56 -0.53 1.79 16 10 C -0.03 -0.78 5.06 -38.74 -0.20 -0.98 16 11 F -0.15 -4.03 12.87 2.25 0.03 -4.00 16 12 C -0.10 -2.28 9.94 -39.63 -0.39 -2.68 16 13 C -0.24 -4.99 9.97 -39.54 -0.39 -5.39 16 14 C -0.06 -1.31 9.74 -39.25 -0.38 -1.70 16 15 C -0.16 -3.74 5.58 -102.41 -0.57 -4.31 16 16 C 0.06 1.20 4.75 -102.64 -0.49 0.71 16 17 C -0.12 -2.18 9.69 -39.14 -0.38 -2.56 16 18 C -0.13 -2.09 9.83 -40.18 -0.39 -2.48 16 19 C -0.08 -1.20 10.03 -39.38 -0.40 -1.60 16 20 C -0.20 -3.54 6.34 -105.21 -0.67 -4.20 16 21 C 0.06 0.78 12.09 -16.52 -0.20 0.58 16 22 N -0.44 -6.87 7.19 30.88 0.22 -6.65 16 23 H 0.44 5.02 8.96 -182.69 -1.64 3.38 16 24 N -0.27 -5.71 12.67 34.34 0.44 -5.28 16 25 C 0.12 2.64 6.98 -81.00 -0.57 2.07 16 26 H 0.29 7.10 8.30 -40.82 -0.34 6.76 16 27 H 0.10 2.03 8.06 -52.49 -0.42 1.60 16 28 H 0.10 1.78 8.06 -52.48 -0.42 1.36 16 29 H 0.10 1.85 8.06 -52.49 -0.42 1.43 16 30 H 0.12 2.05 8.06 -52.49 -0.42 1.63 16 31 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 32 H 0.11 1.32 8.06 -52.48 -0.42 0.90 16 33 H 0.18 1.53 8.06 -52.48 -0.42 1.10 16 LS Contribution 291.24 15.07 4.39 4.39 Total: -1.00 -31.96 291.24 -8.64 -40.60 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -4.23 Total: 2.65 kcal Atomic # 6 Polarization: -24.07 SS G_CDS: -5.95 Total: -30.02 kcal Atomic # 7 Polarization: -33.71 SS G_CDS: 1.43 Total: -32.28 kcal Atomic # 9 Polarization: -4.03 SS G_CDS: 0.03 Total: -4.00 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -4.30 Total: 18.65 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -31.96 -8.64 -40.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241625959.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.186 kcal (2) G-P(sol) polarization free energy of solvation -31.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds