Wall clock time and date at job start Tue Mar 31 2020 06:42:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30844 * 1 3 3 Si 1.86803 * 120.00078 * 2 1 4 4 H 1.48501 * 109.47511 * 239.99840 * 3 2 1 5 5 H 1.48497 * 109.47095 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46915 * 119.99639 * 3 2 1 7 7 C 1.39929 * 120.00473 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00596 * 162.72836 * 7 2 1 9 9 C 1.41319 * 119.99415 * 342.45180 * 7 2 1 10 10 C 1.40784 * 120.20841 * 334.84648 * 9 7 2 11 11 C 1.37623 * 120.02254 * 179.76376 * 10 9 7 12 12 C 1.38507 * 120.45836 * 0.51297 * 11 10 9 13 13 C 1.39578 * 120.41443 * 359.74120 * 12 11 10 14 14 C 1.48331 * 120.01527 * 179.97438 * 13 12 11 15 15 C 1.39864 * 119.90481 * 129.74707 * 14 13 12 16 16 C 1.36355 * 120.54700 * 179.71028 * 15 14 13 17 17 C 1.39880 * 120.04310 * 0.56898 * 16 15 14 18 18 N 1.35752 * 133.41967 * 179.71579 * 17 16 15 19 19 C 1.30126 * 109.67918 * 179.97438 * 18 17 16 20 20 N 1.36051 * 110.11186 * 0.02562 * 19 18 17 21 21 H 0.96999 * 126.35479 * 179.97438 * 20 19 18 22 22 C 1.38118 * 107.28167 * 359.97438 * 20 19 18 23 23 C 1.38608 * 134.02716 * 180.02562 * 22 20 19 24 24 C 1.39129 * 119.96333 * 0.02562 * 13 12 11 25 25 F 1.35100 * 120.22531 * 179.97438 * 24 13 12 26 26 H 0.97001 * 120.00177 * 359.97438 * 1 2 3 27 27 H 1.08000 * 119.99181 * 0.02562 * 10 9 7 28 28 H 1.08000 * 119.77505 * 180.23095 * 11 10 9 29 29 H 1.07994 * 119.79426 * 179.71560 * 12 11 10 30 30 H 1.08001 * 119.72857 * 359.97438 * 15 14 13 31 31 H 1.07998 * 119.97785 * 180.28078 * 16 15 14 32 32 H 1.07999 * 124.94603 * 180.02562 * 19 18 17 33 33 H 1.08003 * 120.19723 * 359.97104 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 3.0963 1.6965 -1.2125 5 1 1.2775 2.7465 0.0006 6 1 3.0962 1.6964 1.2126 7 6 2.0082 -1.2118 -0.0005 8 1 3.0517 -1.2328 -0.2782 9 6 1.3509 -2.4073 0.3679 10 6 0.2249 -2.3654 1.2120 11 6 -0.4152 -3.5316 1.5645 12 6 0.0465 -4.7531 1.1029 13 6 1.1644 -4.8169 0.2695 14 6 1.6516 -6.1298 -0.2193 15 6 1.8977 -6.3186 -1.5831 16 6 2.3514 -7.5183 -2.0459 17 6 2.5635 -8.5771 -1.1567 18 7 2.9928 -9.8553 -1.3133 19 6 3.0209 -10.4529 -0.1577 20 7 2.6112 -9.6001 0.8200 21 1 2.5418 -9.8011 1.7664 22 6 2.3124 -8.3951 0.2147 23 6 1.8572 -7.1708 0.6785 24 6 1.8219 -3.6483 -0.1017 25 9 2.9047 -3.7039 -0.9078 26 1 -0.4850 0.8400 0.0004 27 1 -0.1393 -1.4174 1.5796 28 1 -1.2809 -3.4945 2.2092 29 1 -0.4612 -5.6620 1.3900 30 1 1.7311 -5.5061 -2.2749 31 1 2.5427 -7.6525 -3.1003 32 1 3.3252 -11.4767 0.0021 33 1 1.6629 -7.0268 1.7311 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241696813.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:18 Heat of formation + Delta-G solvation = 36.065124 kcal Electronic energy + Delta-G solvation = -20476.009774 eV Core-core repulsion = 17187.921986 eV Total energy + Delta-G solvation = -3288.087788 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -47.28975 -41.85934 -37.95822 -36.52769 -33.86897 -32.97341 -30.81081 -29.75098 -29.56815 -27.41035 -25.40334 -23.21530 -22.35316 -21.33045 -20.76170 -20.35132 -17.94989 -17.45561 -16.53802 -16.07272 -15.39457 -15.20696 -15.00958 -14.57574 -14.19766 -14.01506 -13.65079 -13.59697 -13.13664 -12.90637 -12.11427 -11.92160 -11.73179 -11.61908 -11.38431 -11.10603 -11.06695 -10.75758 -10.58627 -10.47845 -9.96255 -9.82834 -9.65027 -9.31418 -8.26120 -8.03953 -7.53650 -7.17371 -6.89400 -4.49472 1.13286 1.78302 2.56349 2.61670 2.99259 3.01507 3.03723 3.06228 3.14412 3.85157 4.16677 4.38253 4.46611 4.81212 5.24378 5.37194 5.38781 5.56032 5.66862 5.70995 5.82133 5.99255 6.17372 6.35835 6.47400 6.59905 6.69799 6.78188 6.86066 7.03485 7.11594 7.15763 7.40979 7.41859 7.50884 7.82232 7.88233 7.96194 7.99761 8.43204 8.64999 8.73283 10.04144 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.034933 B = 0.004077 C = 0.003825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.331485 B = 6866.215059 C = 7319.040493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.077 3.923 3 Si 0.913 3.087 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.454 4.454 8 H 0.083 0.917 9 C 0.085 3.915 10 C -0.140 4.140 11 C -0.112 4.112 12 C -0.200 4.200 13 C -0.066 4.066 14 C 0.009 3.991 15 C -0.105 4.105 16 C -0.068 4.068 17 C 0.033 3.967 18 N -0.497 5.497 19 C 0.245 3.755 20 N -0.606 5.606 21 H 0.421 0.579 22 C 0.050 3.950 23 C -0.112 4.112 24 C -0.007 4.007 25 F -0.156 7.156 26 H 0.284 0.716 27 H 0.126 0.874 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.132 0.868 31 H 0.127 0.873 32 H 0.211 0.789 33 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.748 -11.590 3.025 12.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.142 4.142 3 Si 0.737 3.263 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.187 1.187 7 C -0.483 4.483 8 H 0.101 0.899 9 C 0.082 3.918 10 C -0.160 4.160 11 C -0.130 4.130 12 C -0.220 4.220 13 C -0.068 4.068 14 C 0.008 3.992 15 C -0.125 4.125 16 C -0.088 4.088 17 C -0.085 4.085 18 N -0.217 5.217 19 C -0.042 4.042 20 N -0.218 5.218 21 H 0.259 0.741 22 C -0.059 4.059 23 C -0.133 4.133 24 C -0.027 4.027 25 F -0.135 7.135 26 H 0.095 0.905 27 H 0.144 0.856 28 H 0.115 0.885 29 H 0.116 0.884 30 H 0.150 0.850 31 H 0.145 0.855 32 H 0.228 0.772 33 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 1.806 -11.748 2.114 12.073 hybrid contribution 0.222 0.873 1.141 1.454 sum 2.028 -10.875 3.254 11.531 Atomic orbital electron populations 1.69797 1.07620 1.29760 1.34192 1.25903 0.94769 1.01474 0.92007 0.86279 0.80128 0.79679 0.80241 1.18768 1.20180 1.18658 1.19489 0.98294 0.90876 1.39640 0.89861 1.17552 0.92697 0.90647 0.90873 1.21246 0.98033 0.97375 0.99344 1.20654 0.99152 0.92853 1.00386 1.20239 0.99522 0.96777 1.05460 1.18223 0.97915 0.89238 1.01374 1.18641 0.95790 0.92410 0.92399 1.20861 0.99530 0.96881 0.95196 1.19897 0.99588 0.90582 0.98716 1.19032 1.05215 0.92588 0.91628 1.70353 1.21149 1.05835 1.24364 1.25204 0.98869 0.97307 0.82811 1.43109 1.57364 1.10428 1.10895 0.74122 1.18800 1.05043 0.88226 0.93855 1.19942 1.04132 0.89465 0.99771 1.17818 0.90545 0.93634 1.00695 1.91287 1.53260 1.97182 1.71749 0.90478 0.85642 0.88509 0.88378 0.85023 0.85545 0.77217 0.85863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.52 10.98 55.55 0.61 -18.91 16 2 C 0.08 1.88 5.14 -17.34 -0.09 1.79 16 3 Si 0.91 18.21 29.59 -169.99 -5.03 13.18 16 4 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 5 H -0.28 -5.33 7.11 56.52 0.40 -4.92 16 6 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 7 C -0.45 -11.89 8.77 -37.78 -0.33 -12.23 16 8 H 0.08 2.16 7.74 -52.49 -0.41 1.76 16 9 C 0.09 2.23 5.57 -106.79 -0.59 1.63 16 10 C -0.14 -3.44 8.68 -38.84 -0.34 -3.78 16 11 C -0.11 -2.43 10.01 -39.71 -0.40 -2.83 16 12 C -0.20 -4.21 9.49 -38.98 -0.37 -4.58 16 13 C -0.07 -1.47 5.46 -104.91 -0.57 -2.04 16 14 C 0.01 0.18 5.31 -104.86 -0.56 -0.38 16 15 C -0.10 -1.93 8.77 -39.65 -0.35 -2.28 16 16 C -0.07 -1.16 10.03 -39.65 -0.40 -1.56 16 17 C 0.03 0.55 7.23 -84.63 -0.61 -0.06 16 18 N -0.50 -7.66 11.27 -11.99 -0.14 -7.79 16 19 C 0.25 2.69 12.97 -89.76 -1.16 1.52 16 20 N -0.61 -6.75 6.24 -11.77 -0.07 -6.82 16 21 H 0.42 3.05 8.96 -40.82 -0.37 2.69 16 22 C 0.05 0.78 7.29 -84.01 -0.61 0.16 16 23 C -0.11 -1.90 9.50 -39.17 -0.37 -2.27 16 24 C -0.01 -0.16 7.15 -38.28 -0.27 -0.44 16 25 F -0.16 -3.86 15.34 2.25 0.03 -3.82 16 26 H 0.28 6.38 8.30 -40.82 -0.34 6.04 16 27 H 0.13 3.13 6.19 -52.49 -0.32 2.81 16 28 H 0.10 1.83 8.06 -52.49 -0.42 1.41 16 29 H 0.10 1.82 8.02 -52.49 -0.42 1.39 16 30 H 0.13 2.44 7.77 -52.49 -0.41 2.04 16 31 H 0.13 1.89 8.06 -52.49 -0.42 1.46 16 32 H 0.21 1.17 8.06 -52.49 -0.42 0.74 16 33 H 0.12 1.90 8.03 -52.48 -0.42 1.47 16 LS Contribution 295.31 15.07 4.45 4.45 Total: -1.00 -29.87 295.31 -9.92 -39.80 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -2.75 Total: 7.25 kcal Atomic # 6 Polarization: -20.30 SS G_CDS: -7.03 Total: -27.33 kcal Atomic # 7 Polarization: -33.93 SS G_CDS: 0.40 Total: -33.53 kcal Atomic # 9 Polarization: -3.86 SS G_CDS: 0.03 Total: -3.82 kcal Atomic # 14 Polarization: 18.21 SS G_CDS: -5.03 Total: 13.18 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -29.87 -9.92 -39.80 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241696813.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.862 kcal (2) G-P(sol) polarization free energy of solvation -29.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds