Wall clock time and date at job start Tue Mar 31 2020 06:42:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30844 * 1 3 3 Si 1.86803 * 120.00078 * 2 1 4 4 H 1.48501 * 109.47511 * 239.99840 * 3 2 1 5 5 H 1.48497 * 109.47095 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46915 * 119.99639 * 3 2 1 7 7 C 1.39929 * 120.00473 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00596 * 162.72836 * 7 2 1 9 9 C 1.41319 * 119.99415 * 342.45180 * 7 2 1 10 10 C 1.40784 * 120.20841 * 334.84648 * 9 7 2 11 11 C 1.37623 * 120.02254 * 179.76376 * 10 9 7 12 12 C 1.38507 * 120.45836 * 0.51297 * 11 10 9 13 13 C 1.39578 * 120.41443 * 359.74120 * 12 11 10 14 14 C 1.48331 * 120.01527 * 179.97438 * 13 12 11 15 15 C 1.39864 * 119.90481 * 129.74707 * 14 13 12 16 16 C 1.36355 * 120.54700 * 179.71028 * 15 14 13 17 17 C 1.39880 * 120.04310 * 0.56898 * 16 15 14 18 18 N 1.35752 * 133.41967 * 179.71579 * 17 16 15 19 19 C 1.30126 * 109.67918 * 179.97438 * 18 17 16 20 20 N 1.36051 * 110.11186 * 0.02562 * 19 18 17 21 21 H 0.96999 * 126.35479 * 179.97438 * 20 19 18 22 22 C 1.38118 * 107.28167 * 359.97438 * 20 19 18 23 23 C 1.38608 * 134.02716 * 180.02562 * 22 20 19 24 24 C 1.39129 * 119.96333 * 0.02562 * 13 12 11 25 25 F 1.35100 * 120.22531 * 179.97438 * 24 13 12 26 26 H 0.97001 * 120.00177 * 359.97438 * 1 2 3 27 27 H 1.08000 * 119.99181 * 0.02562 * 10 9 7 28 28 H 1.08000 * 119.77505 * 180.23095 * 11 10 9 29 29 H 1.07994 * 119.79426 * 179.71560 * 12 11 10 30 30 H 1.08001 * 119.72857 * 359.97438 * 15 14 13 31 31 H 1.07998 * 119.97785 * 180.28078 * 16 15 14 32 32 H 1.07999 * 124.94603 * 180.02562 * 19 18 17 33 33 H 1.08003 * 120.19723 * 359.97104 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 3.0963 1.6965 -1.2125 5 1 1.2775 2.7465 0.0006 6 1 3.0962 1.6964 1.2126 7 6 2.0082 -1.2118 -0.0005 8 1 3.0517 -1.2328 -0.2782 9 6 1.3509 -2.4073 0.3679 10 6 0.2249 -2.3654 1.2120 11 6 -0.4152 -3.5316 1.5645 12 6 0.0465 -4.7531 1.1029 13 6 1.1644 -4.8169 0.2695 14 6 1.6516 -6.1298 -0.2193 15 6 1.8977 -6.3186 -1.5831 16 6 2.3514 -7.5183 -2.0459 17 6 2.5635 -8.5771 -1.1567 18 7 2.9928 -9.8553 -1.3133 19 6 3.0209 -10.4529 -0.1577 20 7 2.6112 -9.6001 0.8200 21 1 2.5418 -9.8011 1.7664 22 6 2.3124 -8.3951 0.2147 23 6 1.8572 -7.1708 0.6785 24 6 1.8219 -3.6483 -0.1017 25 9 2.9047 -3.7039 -0.9078 26 1 -0.4850 0.8400 0.0004 27 1 -0.1393 -1.4174 1.5796 28 1 -1.2809 -3.4945 2.2092 29 1 -0.4612 -5.6620 1.3900 30 1 1.7311 -5.5061 -2.2749 31 1 2.5427 -7.6525 -3.1003 32 1 3.3252 -11.4767 0.0021 33 1 1.6629 -7.0268 1.7311 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241696813.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:17 Heat of formation + Delta-G solvation = 20.705405 kcal Electronic energy + Delta-G solvation = -20476.675821 eV Core-core repulsion = 17187.921986 eV Total energy + Delta-G solvation = -3288.753836 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.18911 -42.97177 -39.56179 -38.02554 -35.63551 -34.13489 -32.36804 -31.44527 -30.91043 -28.88007 -27.25363 -24.54392 -23.71877 -22.61003 -22.33676 -21.93053 -19.37419 -18.84097 -17.95813 -17.83840 -17.14621 -16.61686 -16.34763 -16.08595 -15.92779 -15.53750 -15.05216 -14.87424 -14.60729 -14.43511 -13.76685 -13.70362 -13.42163 -13.18459 -12.82583 -12.72899 -12.57247 -12.35099 -12.15126 -11.77192 -11.66291 -11.43030 -11.10609 -10.98465 -9.72700 -9.36825 -9.31389 -8.76201 -8.68608 -6.42914 -0.14068 0.43452 0.82530 0.94187 1.37081 1.47496 1.50811 1.91301 2.06127 2.18824 2.62024 2.87271 3.37675 3.51404 3.72412 3.85288 3.99248 4.26937 4.37322 4.40538 4.50978 4.54234 4.65924 4.77997 4.95419 5.08802 5.15318 5.24334 5.29384 5.44074 5.58028 5.62940 5.76518 5.84954 6.00821 6.02604 6.17140 6.54631 6.56131 6.76770 6.86595 6.92494 8.25327 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.034933 B = 0.004077 C = 0.003825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.331485 B = 6866.215059 C = 7319.040493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.816 5.816 2 C 0.042 3.958 3 Si 0.982 3.018 4 H -0.264 1.264 5 H -0.260 1.260 6 H -0.259 1.259 7 C -0.497 4.497 8 H 0.068 0.932 9 C 0.057 3.943 10 C -0.162 4.162 11 C -0.107 4.107 12 C -0.192 4.192 13 C -0.058 4.058 14 C -0.028 4.028 15 C -0.117 4.117 16 C -0.076 4.076 17 C 0.021 3.979 18 N -0.541 5.541 19 C 0.281 3.719 20 N -0.588 5.588 21 H 0.442 0.558 22 C 0.040 3.960 23 C -0.097 4.097 24 C -0.041 4.041 25 F -0.166 7.166 26 H 0.293 0.707 27 H 0.115 0.885 28 H 0.130 0.870 29 H 0.132 0.868 30 H 0.115 0.885 31 H 0.138 0.862 32 H 0.270 0.730 33 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.715 -14.205 4.501 14.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.174 4.174 3 Si 0.802 3.198 4 H -0.189 1.189 5 H -0.184 1.184 6 H -0.183 1.183 7 C -0.526 4.526 8 H 0.087 0.913 9 C 0.054 3.946 10 C -0.181 4.181 11 C -0.125 4.125 12 C -0.212 4.212 13 C -0.059 4.059 14 C -0.030 4.030 15 C -0.137 4.137 16 C -0.095 4.095 17 C -0.096 4.096 18 N -0.262 5.262 19 C -0.006 4.006 20 N -0.202 5.202 21 H 0.285 0.715 22 C -0.071 4.071 23 C -0.118 4.118 24 C -0.061 4.061 25 F -0.145 7.145 26 H 0.104 0.896 27 H 0.133 0.867 28 H 0.148 0.852 29 H 0.150 0.850 30 H 0.134 0.866 31 H 0.156 0.844 32 H 0.286 0.714 33 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 1.758 -14.390 3.629 14.944 hybrid contribution 0.241 1.331 0.713 1.529 sum 2.000 -13.059 4.342 13.906 Atomic orbital electron populations 1.69820 1.08740 1.31108 1.34429 1.26668 0.95564 1.04212 0.90989 0.85250 0.78913 0.75571 0.80019 1.18893 1.18378 1.18320 1.19635 0.98076 0.92542 1.42346 0.91338 1.17910 0.93716 0.91301 0.91645 1.21239 0.98510 0.98115 1.00274 1.21009 0.99447 0.92127 0.99901 1.20657 0.98643 0.97770 1.04084 1.18519 0.97368 0.89750 1.00239 1.18544 0.99061 0.92128 0.93219 1.20735 1.00790 0.97226 0.94958 1.19984 0.99529 0.90362 0.99626 1.19290 1.04734 0.93344 0.92246 1.70393 1.23657 1.05299 1.26831 1.26403 0.94393 0.98597 0.81226 1.43129 1.56107 1.08669 1.12251 0.71538 1.18748 1.05203 0.89275 0.93856 1.19985 1.02598 0.89199 1.00000 1.18150 0.91327 0.94638 1.02021 1.91239 1.53784 1.97258 1.72188 0.89579 0.86745 0.85224 0.85011 0.86646 0.84412 0.71438 0.84171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.60 10.98 21.82 0.24 -41.36 16 2 C 0.04 2.11 5.14 85.25 0.44 2.54 16 3 Si 0.98 38.24 29.59 68.60 2.03 40.27 16 4 H -0.26 -10.24 7.11 99.48 0.71 -9.54 16 5 H -0.26 -9.30 7.11 99.48 0.71 -8.60 16 6 H -0.26 -9.85 7.11 99.48 0.71 -9.15 16 7 C -0.50 -27.60 8.77 23.44 0.21 -27.39 16 8 H 0.07 3.83 7.74 -2.91 -0.02 3.81 16 9 C 0.06 3.14 5.57 -21.27 -0.12 3.02 16 10 C -0.16 -8.18 8.68 22.75 0.20 -7.98 16 11 C -0.11 -4.57 10.01 22.19 0.22 -4.35 16 12 C -0.19 -7.86 9.49 22.66 0.22 -7.65 16 13 C -0.06 -2.59 5.46 -20.05 -0.11 -2.70 16 14 C -0.03 -1.08 5.31 -20.02 -0.11 -1.19 16 15 C -0.12 -4.47 8.77 22.22 0.19 -4.27 16 16 C -0.08 -2.58 10.03 22.23 0.22 -2.36 16 17 C 0.02 0.69 7.23 39.51 0.29 0.97 16 18 N -0.54 -15.04 11.27 -191.85 -2.16 -17.20 16 19 C 0.28 4.74 12.97 180.05 2.33 7.07 16 20 N -0.59 -10.43 6.24 -191.16 -1.19 -11.62 16 21 H 0.44 4.11 8.96 -92.71 -0.83 3.28 16 22 C 0.04 1.13 7.29 38.82 0.28 1.42 16 23 C -0.10 -3.12 9.50 22.54 0.21 -2.91 16 24 C -0.04 -2.15 7.15 23.11 0.17 -1.98 16 25 F -0.17 -8.76 15.34 44.97 0.69 -8.07 16 26 H 0.29 13.38 8.30 -92.71 -0.77 12.61 16 27 H 0.11 5.94 6.19 -2.91 -0.02 5.92 16 28 H 0.13 4.62 8.06 -2.91 -0.02 4.60 16 29 H 0.13 4.47 8.02 -2.91 -0.02 4.45 16 30 H 0.12 4.63 7.77 -2.91 -0.02 4.61 16 31 H 0.14 4.19 8.06 -2.91 -0.02 4.17 16 32 H 0.27 1.06 8.06 -2.91 -0.02 1.04 16 33 H 0.14 3.92 8.03 -2.91 -0.02 3.89 16 Total: -1.00 -69.23 295.31 4.59 -64.64 By element: Atomic # 1 Polarization: 20.75 SS G_CDS: 0.34 Total: 21.09 kcal Atomic # 6 Polarization: -52.40 SS G_CDS: 4.64 Total: -47.75 kcal Atomic # 7 Polarization: -67.06 SS G_CDS: -3.11 Total: -70.18 kcal Atomic # 9 Polarization: -8.76 SS G_CDS: 0.69 Total: -8.07 kcal Atomic # 14 Polarization: 38.24 SS G_CDS: 2.03 Total: 40.27 kcal Total: -69.23 4.59 -64.64 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241696813.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.349 kcal (2) G-P(sol) polarization free energy of solvation -69.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds