Wall clock time and date at job start Tue Mar 31 2020 06:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86799 * 119.99924 * 2 1 4 4 H 1.48506 * 109.47031 * 239.99961 * 3 2 1 5 5 H 1.48496 * 109.47250 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46800 * 120.00400 * 3 2 1 7 7 C 1.40016 * 119.99691 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99630 * 164.07551 * 7 2 1 9 9 C 1.40775 * 120.00290 * 344.07919 * 7 2 1 10 10 C 1.40798 * 120.30804 * 333.06597 * 9 7 2 11 11 C 1.36318 * 120.02629 * 179.97438 * 10 9 7 12 12 C 1.39256 * 120.66946 * 0.02562 * 11 10 9 13 13 F 1.35097 * 119.68967 * 180.02562 * 12 11 10 14 14 C 1.38322 * 120.62081 * 359.75753 * 12 11 10 15 15 C 1.39154 * 119.95144 * 0.49809 * 14 12 11 16 16 C 1.47738 * 120.32771 * 179.75943 * 15 14 12 17 17 C 1.40185 * 119.93847 * 129.70025 * 16 15 14 18 18 C 1.36204 * 120.52381 * 179.97438 * 17 16 15 19 19 C 1.40029 * 120.08154 * 0.02620 * 18 17 16 20 20 N 1.35629 * 133.39267 * 180.02562 * 19 18 17 21 21 C 1.30186 * 109.70395 * 179.97438 * 20 19 18 22 22 N 1.35990 * 110.13664 * 0.02562 * 21 20 19 23 23 H 0.96991 * 126.36716 * 179.97438 * 22 21 20 24 24 C 1.38171 * 107.25771 * 0.02562 * 22 21 20 25 25 C 1.38450 * 133.99879 * 180.02562 * 24 22 21 26 26 H 0.97005 * 119.99455 * 359.97438 * 1 2 3 27 27 H 1.08010 * 119.98929 * 359.97438 * 10 9 7 28 28 H 1.08000 * 119.67086 * 180.02562 * 11 10 9 29 29 H 1.07994 * 120.02256 * 180.28139 * 14 12 11 30 30 H 1.08001 * 119.74208 * 0.02562 * 17 16 15 31 31 H 1.07997 * 119.95915 * 180.02562 * 18 17 16 32 32 H 1.08004 * 124.93485 * 179.97438 * 21 20 19 33 33 H 1.07993 * 120.21780 * 0.21731 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0960 1.6964 -1.2125 5 1 1.2773 2.7464 0.0006 6 1 3.0960 1.6963 1.2125 7 6 2.0083 -1.2126 0.0005 8 1 3.0572 -1.2307 -0.2561 9 6 1.3449 -2.4082 0.3355 10 6 0.2204 -2.3836 1.1824 11 6 -0.4180 -3.5448 1.5026 12 6 0.0305 -4.7637 1.0003 13 9 -0.6174 -5.9024 1.3301 14 6 1.1298 -4.8190 0.1625 15 6 1.8041 -3.6500 -0.1769 16 6 2.9823 -3.7000 -1.0668 17 6 3.0570 -2.8477 -2.1772 18 6 4.1379 -2.8834 -3.0052 19 6 5.1867 -3.7761 -2.7522 20 7 6.3610 -4.0357 -3.3791 21 6 7.0012 -4.9729 -2.7414 22 7 6.2818 -5.3799 -1.6615 23 1 6.5380 -6.0653 -1.0250 24 6 5.1176 -4.6360 -1.6406 25 6 4.0164 -4.5966 -0.8023 26 1 -0.4849 0.8401 0.0004 27 1 -0.1367 -1.4444 1.5786 28 1 -1.2802 -3.5192 2.1524 29 1 1.4665 -5.7691 -0.2251 30 1 2.2516 -2.1566 -2.3774 31 1 4.1862 -2.2223 -3.8578 32 1 7.9636 -5.3702 -3.0287 33 1 3.9620 -5.2515 0.0547 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241696876.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:18 Heat of formation + Delta-G solvation = 34.356149 kcal Electronic energy + Delta-G solvation = -20696.132563 eV Core-core repulsion = 17407.970668 eV Total energy + Delta-G solvation = -3288.161895 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -47.54704 -41.61973 -38.16988 -36.15581 -33.80904 -32.79733 -30.89208 -29.84585 -29.16113 -27.63431 -25.18968 -23.06846 -22.08536 -21.21702 -20.95112 -20.07286 -17.73706 -17.45836 -16.76292 -15.80831 -15.55840 -14.90126 -14.79519 -14.48738 -14.30199 -14.12809 -13.62773 -13.36335 -13.11385 -12.74527 -12.31677 -12.06069 -11.63269 -11.36193 -11.28208 -11.21935 -10.91477 -10.82968 -10.51716 -10.31454 -10.03624 -9.69304 -9.58016 -9.32916 -8.12485 -7.83630 -7.51317 -7.23968 -6.96086 -4.53598 1.37102 2.07191 2.51813 2.67771 2.97931 3.01015 3.06379 3.20717 3.27216 3.78548 4.34242 4.46345 4.60234 5.03110 5.35925 5.51182 5.61455 5.79615 5.82375 5.95622 5.99379 6.01891 6.16598 6.43510 6.65384 6.77030 6.82217 6.91731 6.99657 7.01164 7.26554 7.29915 7.41813 7.58835 7.63199 7.70822 7.82200 8.00385 8.19936 8.35097 8.60221 8.67601 9.92728 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.012409 B = 0.007109 C = 0.004756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2255.957361 B = 3937.912122 C = 5885.699534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.782 5.782 2 C 0.076 3.924 3 Si 0.908 3.092 4 H -0.260 1.260 5 H -0.276 1.276 6 H -0.262 1.262 7 C -0.440 4.440 8 H 0.088 0.912 9 C 0.125 3.875 10 C -0.135 4.135 11 C -0.123 4.123 12 C -0.048 4.048 13 F -0.174 7.174 14 C -0.093 4.093 15 C -0.170 4.170 16 C 0.047 3.953 17 C -0.094 4.094 18 C -0.077 4.077 19 C 0.024 3.976 20 N -0.497 5.497 21 C 0.234 3.766 22 N -0.607 5.607 23 H 0.418 0.582 24 C 0.052 3.948 25 C -0.137 4.137 26 H 0.286 0.714 27 H 0.127 0.873 28 H 0.101 0.899 29 H 0.102 0.898 30 H 0.139 0.861 31 H 0.122 0.878 32 H 0.208 0.792 33 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.686 -4.355 -1.320 8.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.405 5.405 2 C -0.144 4.144 3 Si 0.732 3.268 4 H -0.184 1.184 5 H -0.201 1.201 6 H -0.186 1.186 7 C -0.468 4.468 8 H 0.106 0.894 9 C 0.122 3.878 10 C -0.154 4.154 11 C -0.142 4.142 12 C -0.068 4.068 13 F -0.153 7.153 14 C -0.112 4.112 15 C -0.172 4.172 16 C 0.045 3.955 17 C -0.114 4.114 18 C -0.096 4.096 19 C -0.093 4.093 20 N -0.217 5.217 21 C -0.052 4.052 22 N -0.220 5.220 23 H 0.256 0.744 24 C -0.057 4.057 25 C -0.158 4.158 26 H 0.098 0.902 27 H 0.145 0.855 28 H 0.119 0.881 29 H 0.121 0.879 30 H 0.157 0.843 31 H 0.140 0.860 32 H 0.224 0.776 33 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 7.685 -3.737 -2.110 8.802 hybrid contribution 0.149 -0.277 1.112 1.155 sum 7.835 -4.014 -0.998 8.860 Atomic orbital electron populations 1.69782 1.07679 1.30075 1.33001 1.25996 0.94766 1.01613 0.92040 0.86330 0.80242 0.79738 0.80510 1.18445 1.20135 1.18614 1.19604 0.97934 0.90542 1.38698 0.89391 1.17556 0.90637 0.91162 0.88478 1.20932 0.98300 0.96515 0.99635 1.20504 1.00279 0.91995 1.01434 1.17165 0.98896 0.81416 1.09297 1.91288 1.81605 1.49983 1.92442 1.20530 0.95299 0.97249 0.98077 1.18265 0.99999 0.93216 1.05692 1.18450 0.92061 0.92184 0.92814 1.21007 0.98004 0.98946 0.93473 1.19906 0.91787 0.97746 1.00200 1.19025 0.94919 1.00433 0.94920 1.70281 1.06183 1.15839 1.29404 1.25086 0.98651 0.95453 0.86059 1.43075 1.17301 1.35111 1.26496 0.74417 1.18805 0.89703 0.97004 1.00164 1.20029 0.92193 1.03551 1.00025 0.90240 0.85486 0.88103 0.87939 0.84327 0.86048 0.77595 0.86575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.21 11.00 55.55 0.61 -17.60 16 2 C 0.08 1.72 5.16 -17.31 -0.09 1.63 16 3 Si 0.91 17.33 29.59 -169.99 -5.03 12.30 16 4 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 5 H -0.28 -5.15 7.11 56.52 0.40 -4.75 16 6 H -0.26 -5.03 7.11 56.52 0.40 -4.62 16 7 C -0.44 -10.39 7.08 -37.96 -0.27 -10.66 16 8 H 0.09 2.06 6.64 -52.49 -0.35 1.72 16 9 C 0.12 3.00 5.55 -106.54 -0.59 2.41 16 10 C -0.13 -3.21 8.61 -39.31 -0.34 -3.54 16 11 C -0.12 -2.78 9.94 -39.89 -0.40 -3.17 16 12 C -0.05 -1.09 7.30 -39.17 -0.29 -1.38 16 13 F -0.17 -3.82 17.26 2.25 0.04 -3.79 16 14 C -0.09 -2.03 9.48 -39.21 -0.37 -2.40 16 15 C -0.17 -3.82 5.51 -104.25 -0.57 -4.40 16 16 C 0.05 0.95 4.93 -104.85 -0.52 0.44 16 17 C -0.09 -1.87 7.91 -39.58 -0.31 -2.18 16 18 C -0.08 -1.42 10.03 -39.64 -0.40 -1.82 16 19 C 0.02 0.45 7.23 -84.58 -0.61 -0.16 16 20 N -0.50 -8.42 11.27 -11.96 -0.13 -8.56 16 21 C 0.23 2.93 12.97 -89.76 -1.16 1.76 16 22 N -0.61 -7.69 6.24 -11.77 -0.07 -7.77 16 23 H 0.42 3.67 8.96 -40.82 -0.37 3.30 16 24 C 0.05 0.89 7.29 -84.00 -0.61 0.28 16 25 C -0.14 -2.50 9.53 -39.07 -0.37 -2.87 16 26 H 0.29 6.10 8.30 -40.82 -0.34 5.77 16 27 H 0.13 3.06 6.26 -52.48 -0.33 2.73 16 28 H 0.10 2.06 8.06 -52.49 -0.42 1.64 16 29 H 0.10 2.05 8.04 -52.49 -0.42 1.63 16 30 H 0.14 2.84 7.28 -52.49 -0.38 2.46 16 31 H 0.12 2.03 8.06 -52.49 -0.42 1.61 16 32 H 0.21 1.46 8.06 -52.48 -0.42 1.04 16 33 H 0.12 1.96 8.04 -52.49 -0.42 1.54 16 LS Contribution 292.89 15.07 4.41 4.41 Total: -1.00 -27.84 292.89 -9.75 -37.59 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -2.67 Total: 9.49 kcal Atomic # 6 Polarization: -19.18 SS G_CDS: -6.90 Total: -26.08 kcal Atomic # 7 Polarization: -34.32 SS G_CDS: 0.40 Total: -33.92 kcal Atomic # 9 Polarization: -3.82 SS G_CDS: 0.04 Total: -3.79 kcal Atomic # 14 Polarization: 17.33 SS G_CDS: -5.03 Total: 12.30 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -27.84 -9.75 -37.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241696876.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.942 kcal (2) G-P(sol) polarization free energy of solvation -27.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds