Wall clock time and date at job start Tue Mar 31 2020 06:42:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30839 * 1 3 3 Si 1.86802 * 119.99796 * 2 1 4 4 H 1.48500 * 109.47325 * 87.62292 * 3 2 1 5 5 H 1.48500 * 109.47273 * 207.62613 * 3 2 1 6 6 H 1.48507 * 109.46762 * 327.62475 * 3 2 1 7 7 C 1.39964 * 120.00557 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00496 * 330.93777 * 7 2 1 9 9 C 1.40910 * 120.00076 * 150.92763 * 7 2 1 10 10 C 1.40973 * 120.13107 * 145.03850 * 9 7 2 11 11 C 1.36148 * 119.90498 * 180.02562 * 10 9 7 12 12 C 1.40093 * 120.17849 * 359.97403 * 11 10 9 13 13 C 1.47863 * 119.86503 * 180.02562 * 12 11 10 14 14 C 1.40145 * 119.93680 * 0.02562 * 13 12 11 15 15 C 1.36220 * 120.52345 * 179.97438 * 14 13 12 16 16 C 1.40015 * 120.08150 * 359.97438 * 15 14 13 17 17 N 1.35624 * 133.40272 * 179.97438 * 16 15 14 18 18 C 1.30194 * 109.70470 * 180.02562 * 17 16 15 19 19 N 1.35973 * 110.13321 * 359.97438 * 18 17 16 20 20 H 0.97000 * 126.36690 * 180.02562 * 19 18 17 21 21 C 1.38169 * 107.26525 * 0.02562 * 19 18 17 22 22 C 1.38459 * 134.01126 * 180.28585 * 21 19 18 23 23 C 1.39859 * 120.26454 * 0.02663 * 12 11 10 24 24 C 1.36513 * 120.09239 * 359.70950 * 23 12 11 25 25 F 1.35103 * 120.09205 * 180.30069 * 24 23 12 26 26 H 0.96994 * 120.00111 * 0.02562 * 1 2 3 27 27 H 1.08002 * 120.04365 * 0.02726 * 10 9 7 28 28 H 1.08000 * 119.91155 * 179.97438 * 11 10 9 29 29 H 1.07997 * 119.73539 * 359.94881 * 14 13 12 30 30 H 1.08004 * 119.95568 * 179.97438 * 15 14 13 31 31 H 1.08006 * 124.93060 * 179.97438 * 18 17 16 32 32 H 1.08008 * 120.21448 * 359.93261 * 22 21 19 33 33 H 1.08007 * 119.95163 * 179.97438 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4396 2.0755 1.3988 5 1 3.5641 1.4263 -0.6492 6 1 1.4657 2.6376 -0.7497 7 6 2.0083 -1.2121 0.0005 8 1 1.5705 -2.0884 0.4553 9 6 3.2843 -1.2891 -0.5924 10 6 4.2737 -2.1254 -0.0364 11 6 5.5051 -2.1959 -0.6127 12 6 5.7914 -1.4401 -1.7570 13 6 7.1310 -1.5224 -2.3776 14 6 8.1100 -2.3561 -1.8203 15 6 9.3478 -2.4414 -2.3825 16 6 9.6520 -1.6939 -3.5267 17 7 10.7653 -1.5721 -4.2915 18 6 10.5407 -0.7357 -5.2636 19 7 9.2678 -0.2634 -5.1901 20 1 8.8538 0.3711 -5.7958 21 6 8.6736 -0.8554 -4.0921 22 6 7.4152 -0.7766 -3.5200 23 6 4.8153 -0.6080 -2.3147 24 6 3.5753 -0.5331 -1.7489 25 9 2.6304 0.2660 -2.2911 26 1 -0.4850 0.8400 -0.0004 27 1 4.0550 -2.7093 0.8455 28 1 6.2633 -2.8362 -0.1866 29 1 7.8813 -2.9351 -0.9378 30 1 10.0955 -3.0866 -1.9452 31 1 11.2610 -0.4573 -6.0188 32 1 6.6601 -0.1375 -3.9535 33 1 5.0417 -0.0273 -3.1967 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241697106.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:22 Heat of formation + Delta-G solvation = 45.648761 kcal Electronic energy + Delta-G solvation = -20455.501828 eV Core-core repulsion = 17167.829617 eV Total energy + Delta-G solvation = -3287.672211 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -47.78041 -41.81679 -38.33700 -36.46057 -33.93340 -32.98250 -31.29354 -30.18930 -29.18595 -28.53369 -25.22135 -23.07850 -22.33451 -21.36305 -20.96536 -20.31281 -18.07588 -17.87489 -16.95794 -16.04055 -15.66523 -15.17757 -15.00263 -14.90265 -14.40750 -14.06655 -13.81581 -13.58309 -13.06353 -13.04215 -12.56248 -12.13484 -11.99111 -11.86801 -11.50787 -11.25732 -11.09345 -10.79859 -10.46654 -10.35755 -10.08710 -9.79866 -9.72164 -9.35418 -8.46473 -8.12937 -7.84234 -7.26856 -7.15836 -4.64441 1.04296 1.73745 2.36144 2.49408 2.99563 3.05078 3.06833 3.18814 3.22197 3.87224 4.06650 4.41097 4.44118 4.82535 5.09421 5.23793 5.33338 5.52286 5.59023 5.69127 5.76846 5.81893 5.86447 6.17967 6.35698 6.44165 6.55047 6.61188 6.74104 6.84404 6.94084 7.07658 7.21282 7.35675 7.44579 7.53288 7.61565 7.82804 8.00931 8.03035 8.35508 8.46628 9.70805 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.033126 B = 0.004268 C = 0.003952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.052880 B = 6558.943300 C = 7082.554131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.089 3.911 3 Si 0.923 3.077 4 H -0.285 1.285 5 H -0.242 1.242 6 H -0.276 1.276 7 C -0.433 4.433 8 H 0.101 0.899 9 C 0.070 3.930 10 C -0.198 4.198 11 C -0.061 4.061 12 C -0.186 4.186 13 C 0.042 3.958 14 C -0.134 4.134 15 C -0.058 4.058 16 C 0.012 3.988 17 N -0.495 5.495 18 C 0.237 3.763 19 N -0.608 5.608 20 H 0.420 0.580 21 C 0.065 3.935 22 C -0.152 4.152 23 C -0.083 4.083 24 C -0.024 4.024 25 F -0.152 7.152 26 H 0.291 0.709 27 H 0.111 0.889 28 H 0.106 0.894 29 H 0.130 0.870 30 H 0.123 0.877 31 H 0.209 0.791 32 H 0.120 0.880 33 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.195 1.142 -6.290 13.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.390 5.390 2 C -0.136 4.136 3 Si 0.748 3.252 4 H -0.213 1.213 5 H -0.165 1.165 6 H -0.202 1.202 7 C -0.459 4.459 8 H 0.119 0.881 9 C 0.066 3.934 10 C -0.217 4.217 11 C -0.079 4.079 12 C -0.188 4.188 13 C 0.040 3.960 14 C -0.154 4.154 15 C -0.078 4.078 16 C -0.105 4.105 17 N -0.215 5.215 18 C -0.050 4.050 19 N -0.220 5.220 20 H 0.258 0.742 21 C -0.044 4.044 22 C -0.173 4.173 23 C -0.102 4.102 24 C -0.044 4.044 25 F -0.131 7.131 26 H 0.102 0.898 27 H 0.129 0.871 28 H 0.124 0.876 29 H 0.148 0.852 30 H 0.141 0.859 31 H 0.226 0.774 32 H 0.138 0.862 33 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 12.624 0.759 -6.088 14.036 hybrid contribution -0.983 1.698 -0.723 2.091 sum 11.641 2.457 -6.811 13.709 Atomic orbital electron populations 1.69766 1.08696 1.31316 1.29180 1.26412 0.94708 1.02700 0.89794 0.86108 0.82791 0.78633 0.77671 1.21284 1.16510 1.20162 1.19482 0.97664 0.97851 1.30853 0.88130 1.17796 0.93415 0.91922 0.90273 1.20592 0.92718 1.06541 1.01899 1.20550 0.96404 0.96821 0.94129 1.17689 0.92380 1.07320 1.01384 1.18553 0.92838 0.92707 0.91859 1.20777 0.92538 1.00873 1.01253 1.19859 0.96625 0.98115 0.93197 1.18984 0.90205 1.02188 0.99135 1.70281 1.26630 1.18778 1.05784 1.25121 0.85494 0.95092 0.99320 1.43103 1.12998 1.40307 1.25594 0.74221 1.18810 0.96094 0.98734 0.90765 1.19897 0.93429 1.05337 0.98665 1.20391 0.91921 0.98676 0.99183 1.17258 0.87178 1.02546 0.97383 1.91039 1.64686 1.71999 1.85395 0.89786 0.87053 0.87576 0.85189 0.85862 0.77430 0.86231 0.87513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -19.51 13.93 55.55 0.77 -18.73 16 2 C 0.09 2.23 4.72 -17.33 -0.08 2.15 16 3 Si 0.92 20.72 25.37 -169.99 -4.31 16.40 16 4 H -0.29 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.24 -5.59 5.31 56.52 0.30 -5.29 16 6 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 7 C -0.43 -11.07 9.37 -37.92 -0.36 -11.43 16 8 H 0.10 2.63 8.06 -52.49 -0.42 2.20 16 9 C 0.07 1.68 4.87 -106.73 -0.52 1.16 16 10 C -0.20 -4.21 9.73 -39.30 -0.38 -4.60 16 11 C -0.06 -1.17 9.35 -39.64 -0.37 -1.54 16 12 C -0.19 -3.69 5.90 -104.66 -0.62 -4.31 16 13 C 0.04 0.74 5.88 -104.83 -0.62 0.13 16 14 C -0.13 -2.11 9.34 -39.59 -0.37 -2.48 16 15 C -0.06 -0.90 10.03 -39.64 -0.40 -1.29 16 16 C 0.01 0.19 7.23 -84.59 -0.61 -0.42 16 17 N -0.49 -7.48 11.27 -11.96 -0.13 -7.61 16 18 C 0.24 2.61 12.97 -89.77 -1.16 1.44 16 19 N -0.61 -6.86 6.24 -11.77 -0.07 -6.94 16 20 H 0.42 3.22 8.96 -40.82 -0.37 2.85 16 21 C 0.07 1.00 7.29 -83.99 -0.61 0.39 16 22 C -0.15 -2.50 9.44 -39.09 -0.37 -2.87 16 23 C -0.08 -1.75 9.32 -39.60 -0.37 -2.12 16 24 C -0.02 -0.57 4.96 -39.08 -0.19 -0.76 16 25 F -0.15 -3.71 12.78 2.25 0.03 -3.68 16 26 H 0.29 6.66 8.30 -40.82 -0.34 6.32 16 27 H 0.11 2.17 8.06 -52.49 -0.42 1.74 16 28 H 0.11 1.70 6.14 -52.49 -0.32 1.38 16 29 H 0.13 1.79 6.14 -52.49 -0.32 1.47 16 30 H 0.12 1.63 8.06 -52.48 -0.42 1.20 16 31 H 0.21 1.20 8.06 -52.48 -0.42 0.78 16 32 H 0.12 1.85 6.16 -52.48 -0.32 1.52 16 33 H 0.11 2.03 6.16 -52.48 -0.32 1.70 16 LS Contribution 283.60 15.07 4.27 4.27 Total: -1.00 -29.30 283.60 -9.06 -38.36 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -2.58 Total: 4.47 kcal Atomic # 6 Polarization: -19.51 SS G_CDS: -7.03 Total: -26.54 kcal Atomic # 7 Polarization: -33.85 SS G_CDS: 0.57 Total: -33.28 kcal Atomic # 9 Polarization: -3.71 SS G_CDS: 0.03 Total: -3.68 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -4.31 Total: 16.40 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -29.30 -9.06 -38.36 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241697106.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.010 kcal (2) G-P(sol) polarization free energy of solvation -29.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds