Wall clock time and date at job start Tue Mar 31 2020 06:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30796 * 1 3 3 Si 1.86802 * 119.99418 * 2 1 4 4 H 1.48496 * 109.47196 * 270.00018 * 3 2 1 5 5 H 1.48499 * 109.47317 * 30.00445 * 3 2 1 6 6 H 1.48506 * 109.47064 * 150.00133 * 3 2 1 7 7 C 1.40034 * 120.00536 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99609 * 164.43666 * 7 2 1 9 9 C 1.40830 * 119.99603 * 344.43895 * 7 2 1 10 10 C 1.40730 * 120.32402 * 333.00583 * 9 7 2 11 11 C 1.37595 * 119.85098 * 179.97438 * 10 9 7 12 12 F 1.35105 * 119.73957 * 180.02562 * 11 10 9 13 13 C 1.39227 * 120.51998 * 0.02562 * 11 10 9 14 14 C 1.37949 * 120.66290 * 359.70426 * 13 11 10 15 15 C 1.39246 * 120.12383 * 0.55786 * 14 13 11 16 16 C 1.47704 * 120.25558 * 179.74435 * 15 14 13 17 17 C 1.40213 * 119.94127 * 129.72214 * 16 15 14 18 18 C 1.36191 * 120.51996 * 179.97438 * 17 16 15 19 19 C 1.40037 * 120.08773 * 0.02562 * 18 17 16 20 20 N 1.35618 * 133.39075 * 179.97438 * 19 18 17 21 21 C 1.30196 * 109.70884 * 180.02562 * 20 19 18 22 22 N 1.35986 * 110.13425 * 0.26236 * 21 20 19 23 23 H 0.96996 * 126.37284 * 179.70151 * 22 21 20 24 24 C 1.38178 * 107.25885 * 359.57432 * 22 21 20 25 25 C 1.38447 * 134.00584 * 180.02562 * 24 22 21 26 26 H 0.96998 * 120.00728 * 0.02562 * 1 2 3 27 27 H 1.08003 * 120.07050 * 359.95633 * 10 9 7 28 28 H 1.07999 * 119.67051 * 180.02562 * 13 11 10 29 29 H 1.07995 * 119.93768 * 180.29894 * 14 13 11 30 30 H 1.08004 * 119.73945 * 359.95066 * 17 16 15 31 31 H 1.08000 * 119.95708 * 179.97438 * 18 17 16 32 32 H 1.08004 * 124.93412 * 179.97438 * 21 20 19 33 33 H 1.08005 * 120.21518 * 0.39443 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2418 1.6178 0.0000 4 1 2.4893 2.0466 -1.4000 5 1 1.4392 2.6527 0.7001 6 1 3.5394 1.4404 0.7000 7 6 2.0082 -1.2127 -0.0005 8 1 3.0585 -1.2295 -0.2515 9 6 1.3428 -2.4101 0.3261 10 6 0.2150 -2.3895 1.1675 11 6 -0.4280 -3.5651 1.4799 12 9 -1.5109 -3.5427 2.2875 13 6 0.0285 -4.7777 0.9704 14 6 1.1286 -4.8220 0.1392 15 6 1.8032 -3.6493 -0.1903 16 6 2.9848 -3.6941 -1.0754 17 6 3.0641 -2.8352 -2.1808 18 6 4.1484 -2.8662 -3.0044 19 6 5.1962 -3.7603 -2.7522 20 7 6.3726 -4.0168 -3.3763 21 6 7.0102 -4.9581 -2.7417 22 7 6.2843 -5.3747 -1.6700 23 1 6.5356 -6.0674 -1.0392 24 6 5.1234 -4.6257 -1.6449 25 6 4.0188 -4.5912 -0.8110 26 1 -0.4851 0.8400 -0.0004 27 1 -0.1448 -1.4529 1.5674 28 1 -0.4869 -5.6922 1.2241 29 1 1.4697 -5.7685 -0.2533 30 1 2.2588 -2.1439 -2.3810 31 1 4.1998 -2.2008 -3.8535 32 1 7.9734 -5.3540 -3.0279 33 1 3.9590 -5.2541 0.0396 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241697984.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:25 Heat of formation + Delta-G solvation = 33.548284 kcal Electronic energy + Delta-G solvation = -20689.896481 eV Core-core repulsion = 17401.699554 eV Total energy + Delta-G solvation = -3288.196927 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -47.72991 -41.61343 -38.13842 -36.08812 -33.89286 -32.78026 -30.61436 -30.01344 -29.24244 -27.28944 -25.52470 -22.95661 -22.01108 -21.29204 -21.01463 -19.98527 -17.77367 -17.56576 -16.57304 -15.93386 -15.37759 -14.99339 -14.81194 -14.63859 -14.39124 -14.04308 -13.50811 -13.31916 -13.10247 -12.78124 -12.31549 -12.25973 -11.71337 -11.33578 -11.25160 -11.02391 -10.88893 -10.77447 -10.50331 -10.31527 -10.09734 -9.73788 -9.59361 -9.36478 -7.96444 -7.82320 -7.68231 -7.14773 -6.89147 -4.60022 1.37973 2.07657 2.52636 2.68358 2.99436 3.02416 3.08770 3.20884 3.26633 3.79303 4.34565 4.47573 4.60649 5.03439 5.35408 5.57395 5.58055 5.65948 5.80583 5.95841 6.00864 6.14575 6.25488 6.37222 6.64512 6.79110 6.79635 6.90861 7.00023 7.02143 7.28677 7.37979 7.42571 7.56587 7.63026 7.67216 7.79338 8.03525 8.20441 8.36536 8.60607 8.65630 9.93707 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.014563 B = 0.006451 C = 0.004701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.259934 B = 4339.283708 C = 5954.703799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.779 5.779 2 C 0.076 3.924 3 Si 0.908 3.092 4 H -0.265 1.265 5 H -0.274 1.274 6 H -0.258 1.258 7 C -0.440 4.440 8 H 0.090 0.910 9 C 0.149 3.851 10 C -0.195 4.195 11 C 0.109 3.891 12 F -0.167 7.167 13 C -0.279 4.279 14 C -0.043 4.043 15 C -0.193 4.193 16 C 0.048 3.952 17 C -0.096 4.096 18 C -0.077 4.077 19 C 0.023 3.977 20 N -0.497 5.497 21 C 0.233 3.767 22 N -0.607 5.607 23 H 0.418 0.582 24 C 0.052 3.948 25 C -0.138 4.138 26 H 0.286 0.714 27 H 0.130 0.870 28 H 0.101 0.899 29 H 0.100 0.900 30 H 0.139 0.861 31 H 0.121 0.879 32 H 0.207 0.793 33 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.040 -5.637 -1.808 9.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.402 5.402 2 C -0.145 4.145 3 Si 0.731 3.269 4 H -0.190 1.190 5 H -0.199 1.199 6 H -0.182 1.182 7 C -0.468 4.468 8 H 0.108 0.892 9 C 0.146 3.854 10 C -0.215 4.215 11 C 0.090 3.910 12 F -0.146 7.146 13 C -0.299 4.299 14 C -0.061 4.061 15 C -0.195 4.195 16 C 0.047 3.953 17 C -0.116 4.116 18 C -0.096 4.096 19 C -0.094 4.094 20 N -0.217 5.217 21 C -0.053 4.053 22 N -0.220 5.220 23 H 0.256 0.744 24 C -0.056 4.056 25 C -0.160 4.160 26 H 0.098 0.902 27 H 0.148 0.852 28 H 0.119 0.881 29 H 0.118 0.882 30 H 0.156 0.844 31 H 0.139 0.861 32 H 0.224 0.776 33 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 8.025 -4.979 -2.573 9.789 hybrid contribution 0.048 -0.092 1.188 1.192 sum 8.073 -5.071 -1.385 9.634 Atomic orbital electron populations 1.69781 1.07737 1.30038 1.32649 1.26020 0.94755 1.01699 0.92000 0.86286 0.80727 0.80124 0.79733 1.18969 1.19904 1.18153 1.19631 0.97853 0.90405 1.38918 0.89199 1.17245 0.89480 0.91319 0.87403 1.21234 1.00697 0.95899 1.03654 1.17780 0.85096 0.95297 0.92821 1.91342 1.53755 1.97618 1.71864 1.20185 1.03964 0.95326 1.10388 1.20395 0.94188 0.96014 0.95523 1.18543 1.00446 0.93900 1.06624 1.18498 0.92079 0.92030 0.92721 1.21030 0.97961 0.98979 0.93613 1.19907 0.91793 0.97729 1.00204 1.19025 0.94903 1.00470 0.95011 1.70277 1.06217 1.15933 1.29265 1.25081 0.98582 0.95354 0.86314 1.43075 1.17376 1.34460 1.27093 0.74440 1.18817 0.89792 0.96836 1.00202 1.20029 0.92105 1.03685 1.00145 0.90246 0.85213 0.88086 0.88171 0.84369 0.86092 0.77623 0.86588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.68 10.99 55.55 0.61 -18.07 16 2 C 0.08 1.75 5.17 -17.32 -0.09 1.66 16 3 Si 0.91 17.60 29.59 -169.99 -5.03 12.57 16 4 H -0.26 -5.08 7.11 56.52 0.40 -4.67 16 5 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 6 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 7 C -0.44 -10.55 7.07 -37.93 -0.27 -10.82 16 8 H 0.09 2.13 6.64 -52.49 -0.35 1.78 16 9 C 0.15 3.63 5.55 -106.56 -0.59 3.04 16 10 C -0.19 -4.85 8.63 -38.88 -0.34 -5.19 16 11 C 0.11 2.58 7.28 -39.45 -0.29 2.30 16 12 F -0.17 -3.83 17.26 2.25 0.04 -3.79 16 13 C -0.28 -6.04 10.01 -39.32 -0.39 -6.43 16 14 C -0.04 -0.90 9.49 -39.31 -0.37 -1.27 16 15 C -0.19 -4.31 5.51 -104.24 -0.57 -4.88 16 16 C 0.05 0.98 4.93 -104.85 -0.52 0.46 16 17 C -0.10 -1.89 7.91 -39.58 -0.31 -2.20 16 18 C -0.08 -1.41 10.03 -39.64 -0.40 -1.81 16 19 C 0.02 0.42 7.23 -84.58 -0.61 -0.19 16 20 N -0.50 -8.36 11.27 -11.95 -0.13 -8.50 16 21 C 0.23 2.88 12.97 -89.76 -1.16 1.72 16 22 N -0.61 -7.57 6.24 -11.77 -0.07 -7.65 16 23 H 0.42 3.57 8.96 -40.82 -0.37 3.21 16 24 C 0.05 0.88 7.29 -83.99 -0.61 0.27 16 25 C -0.14 -2.48 9.53 -39.07 -0.37 -2.86 16 26 H 0.29 6.27 8.30 -40.82 -0.34 5.93 16 27 H 0.13 3.36 6.26 -52.48 -0.33 3.03 16 28 H 0.10 1.97 8.06 -52.49 -0.42 1.54 16 29 H 0.10 1.83 8.04 -52.49 -0.42 1.40 16 30 H 0.14 2.83 7.28 -52.48 -0.38 2.44 16 31 H 0.12 2.01 8.06 -52.49 -0.42 1.59 16 32 H 0.21 1.44 8.06 -52.48 -0.42 1.02 16 33 H 0.12 1.90 8.04 -52.48 -0.42 1.48 16 LS Contribution 292.93 15.07 4.41 4.41 Total: -1.00 -28.20 292.93 -9.75 -37.95 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -2.67 Total: 9.28 kcal Atomic # 6 Polarization: -19.30 SS G_CDS: -6.90 Total: -26.20 kcal Atomic # 7 Polarization: -34.62 SS G_CDS: 0.40 Total: -34.21 kcal Atomic # 9 Polarization: -3.83 SS G_CDS: 0.04 Total: -3.79 kcal Atomic # 14 Polarization: 17.60 SS G_CDS: -5.03 Total: 12.57 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -28.20 -9.75 -37.95 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241697984.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.493 kcal (2) G-P(sol) polarization free energy of solvation -28.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds