Wall clock time and date at job start Tue Mar 31 2020 06:37:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30830 * 1 3 3 Si 1.86795 * 119.99997 * 2 1 4 4 H 1.48496 * 109.47354 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46831 * 299.99531 * 3 2 1 6 6 H 1.48495 * 109.47723 * 59.99261 * 3 2 1 7 7 C 1.39925 * 119.99822 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99684 * 162.79639 * 7 2 1 9 9 C 1.41421 * 120.00557 * 342.79657 * 7 2 1 10 10 C 1.40756 * 120.16885 * 334.77111 * 9 7 2 11 11 C 1.37907 * 119.96890 * 179.97438 * 10 9 7 12 12 F 1.35107 * 119.83121 * 180.02562 * 11 10 9 13 13 C 1.38649 * 120.33532 * 359.97438 * 11 10 9 14 14 C 1.39684 * 120.34574 * 359.97438 * 13 11 10 15 15 C 1.48364 * 119.98812 * 180.02562 * 14 13 11 16 16 C 1.39854 * 119.90436 * 179.97438 * 15 14 13 17 17 C 1.36346 * 120.55035 * 179.97438 * 16 15 14 18 18 C 1.39881 * 120.04272 * 0.02622 * 17 16 15 19 19 N 1.35743 * 133.42997 * 179.97438 * 18 17 16 20 20 C 1.30136 * 109.68095 * 180.02562 * 19 18 17 21 21 N 1.36026 * 110.11527 * 359.97438 * 20 19 18 22 22 H 0.96998 * 126.36498 * 180.02562 * 21 20 19 23 23 C 1.38123 * 107.28228 * 359.97438 * 21 20 19 24 24 C 1.38604 * 134.02474 * 180.33096 * 23 21 20 25 25 C 1.38803 * 120.02122 * 0.02562 * 14 13 11 26 26 H 0.96998 * 120.00287 * 0.02562 * 1 2 3 27 27 H 1.08003 * 120.01704 * 359.97438 * 10 9 7 28 28 H 1.07999 * 119.82842 * 179.72197 * 13 11 10 29 29 H 1.08002 * 119.72745 * 0.03134 * 16 15 14 30 30 H 1.07994 * 119.98106 * 180.02562 * 17 16 15 31 31 H 1.08000 * 124.94244 * 179.97438 * 20 19 18 32 32 H 1.07997 * 120.20357 * 359.92357 * 24 23 21 33 33 H 1.07999 * 120.16504 * 179.97438 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7022 1.3464 0.0006 5 1 1.8836 2.3963 -1.2126 6 1 1.8835 2.3966 1.2123 7 6 2.0079 -1.2118 0.0005 8 1 3.0517 -1.2328 -0.2761 9 6 1.3483 -2.4090 0.3633 10 6 0.2192 -2.3682 1.2028 11 6 -0.4211 -3.5382 1.5535 12 9 -1.5050 -3.4957 2.3590 13 6 0.0411 -4.7577 1.0828 14 6 1.1597 -4.8139 0.2481 15 6 1.6472 -6.1231 -0.2515 16 6 2.7670 -6.1773 -1.0875 17 6 3.2266 -7.3733 -1.5538 18 6 2.5773 -8.5600 -1.1976 19 7 2.7924 -9.8668 -1.4949 20 6 1.8945 -10.6034 -0.9076 21 7 1.0420 -9.8208 -0.1927 22 1 0.2872 -10.1253 0.3349 23 6 1.4515 -8.5119 -0.3566 24 6 0.9944 -7.2929 0.1190 25 6 1.8154 -3.6453 -0.1141 26 1 -0.4850 0.8400 -0.0004 27 1 -0.1455 -1.4211 1.5721 28 1 -0.4639 -5.6693 1.3662 29 1 3.2726 -5.2642 -1.3654 30 1 4.0924 -7.4045 -2.1985 31 1 1.8350 -11.6795 -0.9776 32 1 0.1322 -7.2517 0.7681 33 1 2.6807 -3.6861 -0.7590 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241707137.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:33 Heat of formation + Delta-G solvation = 35.258087 kcal Electronic energy + Delta-G solvation = -20165.887222 eV Core-core repulsion = 16877.764438 eV Total energy + Delta-G solvation = -3288.122784 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -47.72388 -41.89871 -38.25107 -36.44770 -33.85752 -32.98553 -30.78827 -30.10317 -29.37695 -27.40101 -25.59714 -23.24691 -22.59223 -21.38849 -20.61595 -20.39435 -18.03381 -17.54198 -16.60348 -16.05061 -15.16294 -15.06757 -15.05895 -14.76590 -14.43184 -14.37945 -13.86101 -13.56051 -13.29387 -12.90659 -12.16455 -12.05953 -11.85683 -11.68573 -11.50579 -11.17132 -10.96380 -10.71303 -10.58892 -10.38463 -10.11291 -9.85125 -9.73287 -9.34156 -8.42788 -8.12634 -7.58094 -7.05310 -6.89291 -4.57879 1.01021 1.70801 2.54072 2.59084 2.98601 2.98661 3.01944 3.06626 3.21431 3.82395 4.13455 4.35360 4.51630 4.77190 5.15172 5.31832 5.43211 5.48783 5.56034 5.65685 5.76330 5.92798 6.14572 6.33338 6.51354 6.53468 6.66351 6.67831 6.83401 6.94736 7.08543 7.10787 7.38210 7.40363 7.54386 7.66015 7.78359 7.93831 8.06350 8.40110 8.67026 8.68848 10.01944 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.025985 B = 0.004078 C = 0.003562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.275934 B = 6865.254464 C = 7858.315951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.075 3.925 3 Si 0.911 3.089 4 H -0.258 1.258 5 H -0.273 1.273 6 H -0.271 1.271 7 C -0.455 4.455 8 H 0.085 0.915 9 C 0.126 3.874 10 C -0.192 4.192 11 C 0.105 3.895 12 F -0.166 7.166 13 C -0.261 4.261 14 C -0.013 4.013 15 C 0.009 3.991 16 C -0.115 4.115 17 C -0.067 4.067 18 C 0.030 3.970 19 N -0.497 5.497 20 C 0.245 3.755 21 N -0.606 5.606 22 H 0.421 0.579 23 C 0.052 3.948 24 C -0.119 4.119 25 C -0.205 4.205 26 H 0.284 0.716 27 H 0.130 0.870 28 H 0.103 0.897 29 H 0.137 0.863 30 H 0.127 0.873 31 H 0.211 0.789 32 H 0.125 0.875 33 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.483 -11.932 -0.216 12.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.144 4.144 3 Si 0.735 3.265 4 H -0.182 1.182 5 H -0.198 1.198 6 H -0.196 1.196 7 C -0.484 4.484 8 H 0.103 0.897 9 C 0.123 3.877 10 C -0.212 4.212 11 C 0.086 3.914 12 F -0.145 7.145 13 C -0.281 4.281 14 C -0.013 4.013 15 C 0.007 3.993 16 C -0.135 4.135 17 C -0.086 4.086 18 C -0.087 4.087 19 N -0.217 5.217 20 C -0.042 4.042 21 N -0.218 5.218 22 H 0.259 0.741 23 C -0.057 4.057 24 C -0.140 4.140 25 C -0.224 4.224 26 H 0.095 0.905 27 H 0.148 0.852 28 H 0.121 0.879 29 H 0.155 0.845 30 H 0.145 0.855 31 H 0.228 0.772 32 H 0.143 0.857 33 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 1.956 -12.019 -0.765 12.201 hybrid contribution -1.107 0.740 0.906 1.611 sum 0.850 -11.279 0.141 11.311 Atomic orbital electron populations 1.69810 1.07724 1.29669 1.33819 1.25976 0.94774 1.01674 0.92017 0.86200 0.81009 0.80539 0.78717 1.18159 1.19823 1.19581 1.19639 0.98145 0.90802 1.39786 0.89661 1.17298 0.90183 0.92240 0.87953 1.21388 1.00748 0.96002 1.03111 1.17553 0.85412 0.95056 0.93419 1.91343 1.53646 1.97569 1.71990 1.20262 1.02803 0.95182 1.09835 1.17986 0.95294 0.90608 0.97434 1.18736 0.93715 0.92021 0.94799 1.20890 0.96748 0.97712 0.98169 1.19909 0.99539 0.89126 1.00042 1.19050 0.96672 0.91919 1.01084 1.70355 1.24871 1.01707 1.24752 1.25204 0.87884 0.98380 0.92712 1.43120 1.28857 1.05572 1.44245 0.74093 1.18821 0.98737 0.85521 1.02626 1.20012 1.02131 0.88396 1.03479 1.21178 1.03606 0.91608 1.06045 0.90508 0.85222 0.87933 0.84539 0.85515 0.77216 0.85688 0.87496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.54 10.96 55.55 0.61 -18.93 16 2 C 0.07 1.78 5.14 -17.35 -0.09 1.69 16 3 Si 0.91 17.70 29.59 -169.99 -5.03 12.67 16 4 H -0.26 -4.94 7.11 56.52 0.40 -4.54 16 5 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 6 H -0.27 -5.22 7.11 56.52 0.40 -4.81 16 7 C -0.46 -11.30 9.05 -37.74 -0.34 -11.64 16 8 H 0.09 2.00 7.90 -52.48 -0.41 1.59 16 9 C 0.13 3.17 5.56 -106.88 -0.59 2.58 16 10 C -0.19 -4.90 8.66 -38.75 -0.34 -5.23 16 11 C 0.10 2.50 7.28 -39.55 -0.29 2.22 16 12 F -0.17 -3.85 17.26 2.25 0.04 -3.81 16 13 C -0.26 -5.71 9.41 -38.89 -0.37 -6.07 16 14 C -0.01 -0.27 5.87 -104.98 -0.62 -0.89 16 15 C 0.01 0.17 5.88 -104.85 -0.62 -0.45 16 16 C -0.12 -1.92 9.34 -39.66 -0.37 -2.29 16 17 C -0.07 -1.05 10.03 -39.65 -0.40 -1.44 16 18 C 0.03 0.49 7.23 -84.63 -0.61 -0.12 16 19 N -0.50 -7.39 11.27 -11.99 -0.14 -7.52 16 20 C 0.25 2.60 12.97 -89.77 -1.16 1.44 16 21 N -0.61 -6.58 6.23 -11.77 -0.07 -6.66 16 22 H 0.42 3.01 8.96 -40.82 -0.37 2.64 16 23 C 0.05 0.79 7.29 -84.00 -0.61 0.18 16 24 C -0.12 -1.96 9.44 -39.17 -0.37 -2.33 16 25 C -0.20 -4.65 9.16 -38.52 -0.35 -5.00 16 26 H 0.28 6.39 8.30 -40.82 -0.34 6.06 16 27 H 0.13 3.44 6.18 -52.48 -0.32 3.11 16 28 H 0.10 2.00 6.16 -52.49 -0.32 1.68 16 29 H 0.14 2.13 6.16 -52.49 -0.32 1.80 16 30 H 0.13 1.72 8.06 -52.49 -0.42 1.30 16 31 H 0.21 1.11 8.06 -52.49 -0.42 0.69 16 32 H 0.13 1.91 6.17 -52.49 -0.32 1.59 16 33 H 0.11 2.20 6.16 -52.49 -0.32 1.88 16 LS Contribution 291.06 15.07 4.39 4.39 Total: -1.00 -29.39 291.06 -9.71 -39.10 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -2.38 Total: 8.15 kcal Atomic # 6 Polarization: -20.26 SS G_CDS: -7.13 Total: -27.38 kcal Atomic # 7 Polarization: -33.51 SS G_CDS: 0.40 Total: -33.11 kcal Atomic # 9 Polarization: -3.85 SS G_CDS: 0.04 Total: -3.81 kcal Atomic # 14 Polarization: 17.70 SS G_CDS: -5.03 Total: 12.67 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -29.39 -9.71 -39.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241707137.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.353 kcal (2) G-P(sol) polarization free energy of solvation -29.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds