Wall clock time and date at job start Tue Mar 31 2020 06:40:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31072 * 1 3 3 Si 1.86798 * 119.99947 * 2 1 4 4 H 1.48509 * 109.47090 * 240.00209 * 3 2 1 5 5 H 1.48500 * 109.47353 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47224 * 120.00402 * 3 2 1 7 7 C 1.39695 * 119.99932 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99686 * 180.02562 * 7 2 1 9 9 C 1.40962 * 119.99813 * 359.97438 * 7 2 1 10 10 C 1.38989 * 126.93320 * 21.68778 * 9 7 2 11 11 N 1.35575 * 109.24629 * 179.97438 * 10 9 7 12 12 H 0.97006 * 124.70593 * 180.02562 * 11 10 9 13 13 C 1.38179 * 110.59415 * 359.97438 * 11 10 9 14 14 C 1.39160 * 132.74417 * 179.97438 * 13 11 10 15 15 C 1.37997 * 120.24789 * 180.02562 * 14 13 11 16 16 C 1.38362 * 120.77430 * 359.78360 * 15 14 13 17 17 C 1.39137 * 120.10369 * 0.46056 * 16 15 14 18 18 C 1.48147 * 120.28579 * 179.80583 * 17 16 15 19 19 C 1.39438 * 119.70690 * 50.48039 * 18 17 16 20 20 C 1.38334 * 119.09212 * 180.25619 * 19 18 17 21 21 C 1.39016 * 118.49156 * 359.48307 * 20 19 18 22 22 F 1.35106 * 120.32955 * 180.22296 * 21 20 19 23 23 C 1.38504 * 119.33572 * 0.49239 * 21 20 19 24 24 N 1.31733 * 120.86137 * 359.77669 * 23 21 20 25 25 C 1.40236 * 107.88277 * 359.97438 * 13 11 10 26 26 H 0.97007 * 119.99771 * 0.02562 * 1 2 3 27 27 H 1.08006 * 125.37839 * 359.95707 * 10 9 7 28 28 H 1.07998 * 119.87116 * 359.97438 * 14 13 11 29 29 H 1.07994 * 119.61568 * 180.02562 * 15 14 13 30 30 H 1.07999 * 119.94671 * 180.26023 * 16 15 14 31 31 H 1.08000 * 120.45963 * 359.97438 * 19 18 17 32 32 H 1.07993 * 120.75622 * 179.72259 * 20 19 18 33 33 H 1.07995 * 119.57267 * 179.74582 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3107 0.0000 0.0000 3 14 2.2447 1.6177 0.0000 4 1 3.0984 1.6964 -1.2126 5 1 1.2797 2.7465 -0.0006 6 1 3.0985 1.6964 1.2124 7 6 2.0092 -1.2098 -0.0005 8 1 3.0891 -1.2098 -0.0001 9 6 1.3043 -2.4305 -0.0005 10 6 -0.0075 -2.6375 -0.4106 11 7 -0.3217 -3.9476 -0.2591 12 1 -1.1822 -4.3381 -0.4781 13 6 0.7543 -4.6498 0.2494 14 6 0.9376 -5.9896 0.5781 15 6 2.1478 -6.4229 1.0799 16 6 3.1968 -5.5389 1.2602 17 6 3.0377 -4.1933 0.9441 18 6 4.1568 -3.2425 1.1396 19 6 5.4167 -3.5426 0.6231 20 6 6.4539 -2.6481 0.8177 21 6 6.1949 -1.4738 1.5151 22 9 7.1795 -0.5722 1.7226 23 6 4.9187 -1.2400 1.9999 24 7 3.9512 -2.1124 1.8044 25 6 1.8107 -3.7459 0.4325 26 1 -0.4850 0.8401 -0.0004 27 1 -0.6718 -1.8750 -0.7899 28 1 0.1293 -6.6925 0.4407 29 1 2.2790 -7.4650 1.3312 30 1 4.1396 -5.8933 1.6499 31 1 5.5818 -4.4628 0.0824 32 1 7.4415 -2.8556 0.4332 33 1 4.7142 -0.3309 2.5458 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241810149.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:31 Heat of formation + Delta-G solvation = 46.549739 kcal Electronic energy + Delta-G solvation = -21155.328077 eV Core-core repulsion = 17867.694935 eV Total energy + Delta-G solvation = -3287.633141 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -48.65509 -40.06394 -39.16411 -35.84176 -33.46770 -32.10332 -31.86339 -29.61238 -28.21992 -27.59497 -24.80183 -23.46192 -23.25171 -21.04702 -20.57348 -19.44521 -17.54855 -17.19313 -16.68405 -15.93993 -15.56057 -15.42326 -15.06597 -14.41792 -14.24276 -13.65958 -13.59938 -13.43445 -13.02819 -12.74664 -12.54401 -12.47937 -12.01860 -11.39528 -11.24666 -11.10047 -10.91031 -10.63443 -10.52615 -9.91173 -9.75499 -9.43310 -9.15905 -8.96310 -8.73014 -8.06537 -7.12360 -6.48080 -6.42270 -3.90805 1.14014 1.53821 2.13936 2.54401 3.14573 3.20050 3.23928 4.09924 4.13921 4.24210 4.37997 4.48943 4.66771 4.83841 4.99680 5.10575 5.32320 5.59748 5.64070 5.75968 5.88083 5.94652 6.16591 6.17855 6.22523 6.41451 6.57056 6.73360 7.01000 7.08964 7.15039 7.32173 7.44579 7.55923 7.75891 8.00739 8.32509 8.44354 8.69569 9.01770 9.17944 9.24003 10.60645 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.011917 B = 0.009707 C = 0.005531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2348.956581 B = 2883.923778 C = 5061.342882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.061 3.939 3 Si 0.901 3.099 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.400 4.400 8 H 0.068 0.932 9 C 0.030 3.970 10 C -0.078 4.078 11 N -0.590 5.590 12 H 0.395 0.605 13 C 0.081 3.919 14 C -0.138 4.138 15 C -0.121 4.121 16 C -0.161 4.161 17 C 0.001 3.999 18 C 0.184 3.816 19 C -0.139 4.139 20 C -0.116 4.116 21 C 0.026 3.974 22 F -0.140 7.140 23 C 0.078 3.922 24 N -0.401 5.401 25 C -0.094 4.094 26 H 0.271 0.729 27 H 0.176 0.824 28 H 0.103 0.897 29 H 0.111 0.889 30 H 0.109 0.891 31 H 0.141 0.859 32 H 0.140 0.860 33 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.549 -6.375 0.906 9.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C -0.148 4.148 3 Si 0.728 3.272 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.433 4.433 8 H 0.086 0.914 9 C 0.025 3.975 10 C -0.202 4.202 11 N -0.191 5.191 12 H 0.228 0.772 13 C -0.030 4.030 14 C -0.160 4.160 15 C -0.140 4.140 16 C -0.183 4.183 17 C 0.000 4.000 18 C 0.048 3.952 19 C -0.159 4.159 20 C -0.142 4.142 21 C 0.004 3.996 22 F -0.119 7.119 23 C -0.082 4.082 24 N -0.107 5.107 25 C -0.102 4.102 26 H 0.081 0.919 27 H 0.193 0.807 28 H 0.121 0.879 29 H 0.129 0.871 30 H 0.127 0.873 31 H 0.159 0.841 32 H 0.158 0.842 33 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 5.450 -5.891 1.191 8.113 hybrid contribution 0.939 0.778 -0.354 1.270 sum 6.388 -5.113 0.838 8.225 Atomic orbital electron populations 1.69667 1.06902 1.27806 1.42513 1.25537 0.94756 1.00161 0.94377 0.86460 0.79892 0.81398 0.79456 1.19683 1.20761 1.19268 1.18551 0.93512 0.88681 1.42552 0.91434 1.17967 0.91794 0.89733 0.97985 1.22704 1.00387 0.82460 1.14664 1.41439 1.11456 1.08616 1.57572 0.77169 1.18131 0.89192 0.92643 1.03002 1.19896 0.97998 0.92314 1.05806 1.20269 0.92893 0.98246 1.02590 1.20503 0.98966 0.91803 1.06997 1.17652 0.91017 0.90971 1.00405 1.19985 0.91689 0.91077 0.92493 1.22023 0.92425 1.00624 1.00836 1.21413 1.00699 0.93096 0.98998 1.18934 0.87350 0.89689 1.03618 1.91465 1.60814 1.66168 1.93446 1.22941 0.86798 0.99808 0.98651 1.68131 1.30591 1.00453 1.11557 1.19353 0.91722 0.95542 1.03562 0.91871 0.80738 0.87889 0.87099 0.87331 0.84108 0.84180 0.82228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.22 10.80 55.54 0.60 -21.62 16 2 C 0.06 1.61 5.47 -17.33 -0.09 1.51 16 3 Si 0.90 20.22 29.56 -169.99 -5.02 15.19 16 4 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 5 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 6 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 7 C -0.40 -10.79 7.94 -38.01 -0.30 -11.09 16 8 H 0.07 1.81 5.49 -52.49 -0.29 1.52 16 9 C 0.03 0.81 5.98 -104.84 -0.63 0.18 16 10 C -0.08 -1.94 10.77 -15.62 -0.17 -2.11 16 11 N -0.59 -12.49 5.99 -9.81 -0.06 -12.54 16 12 H 0.39 6.77 8.96 -40.82 -0.37 6.40 16 13 C 0.08 1.76 7.23 -83.91 -0.61 1.16 16 14 C -0.14 -2.51 10.06 -39.33 -0.40 -2.90 16 15 C -0.12 -2.02 10.00 -39.62 -0.40 -2.42 16 16 C -0.16 -2.88 9.51 -39.20 -0.37 -3.25 16 17 C 0.00 0.02 5.60 -104.73 -0.59 -0.57 16 18 C 0.18 3.69 5.45 -82.97 -0.45 3.24 16 19 C -0.14 -2.25 9.55 -39.10 -0.37 -2.62 16 20 C -0.12 -1.71 10.15 -39.26 -0.40 -2.11 16 21 C 0.03 0.42 7.35 -39.19 -0.29 0.14 16 22 F -0.14 -2.21 17.28 2.25 0.04 -2.17 16 23 C 0.08 1.46 10.94 -17.50 -0.19 1.27 16 24 N -0.40 -8.61 7.62 -9.74 -0.07 -8.68 16 25 C -0.09 -2.26 6.14 -104.64 -0.64 -2.90 16 26 H 0.27 6.73 8.30 -40.82 -0.34 6.39 16 27 H 0.18 4.48 6.36 -52.48 -0.33 4.14 16 28 H 0.10 1.57 8.06 -52.49 -0.42 1.14 16 29 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 30 H 0.11 1.63 8.04 -52.49 -0.42 1.21 16 31 H 0.14 1.89 8.05 -52.49 -0.42 1.47 16 32 H 0.14 1.60 8.06 -52.49 -0.42 1.17 16 33 H 0.16 2.72 8.06 -52.49 -0.42 2.30 16 LS Contribution 292.15 15.07 4.40 4.40 Total: -1.00 -29.38 292.15 -8.67 -38.05 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -2.66 Total: 9.87 kcal Atomic # 6 Polarization: -16.60 SS G_CDS: -5.90 Total: -22.49 kcal Atomic # 7 Polarization: -43.31 SS G_CDS: 0.47 Total: -42.85 kcal Atomic # 9 Polarization: -2.21 SS G_CDS: 0.04 Total: -2.17 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -29.38 -8.67 -38.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241810149.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.595 kcal (2) G-P(sol) polarization free energy of solvation -29.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds