Wall clock time and date at job start Tue Mar 31 2020 05:25:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39633 * 120.07794 * 153.00914 * 3 2 1 5 5 C 1.38050 * 120.11154 * 180.02562 * 4 3 2 6 6 C 1.38121 * 120.27729 * 0.02562 * 5 4 3 7 7 C 1.39471 * 120.16234 * 359.97407 * 6 5 4 8 8 C 1.48287 * 120.05907 * 179.97438 * 7 6 5 9 9 C 1.39295 * 120.13142 * 129.72708 * 8 7 6 10 10 C 1.37970 * 119.96889 * 179.72634 * 9 8 7 11 11 C 1.38673 * 120.24338 * 0.57065 * 10 9 8 12 12 F 1.35103 * 119.86265 * 179.71895 * 11 10 9 13 13 C 1.38329 * 120.27361 * 359.70585 * 11 10 9 14 14 C 1.38711 * 120.02366 * 359.97438 * 13 11 10 15 15 O 1.35663 * 120.12369 * 179.97438 * 14 13 11 16 16 C 1.34819 * 116.99938 * 354.40795 * 15 14 13 17 17 H 1.08005 * 119.99762 * 5.05459 * 16 15 14 18 18 C 1.38643 * 119.99940 * 185.06068 * 16 15 14 19 19 N 1.31558 * 120.00123 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99925 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47073 * 59.99759 * 20 18 16 22 22 H 1.48506 * 109.47257 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47284 * 300.00022 * 20 18 16 24 24 C 1.39181 * 119.87781 * 0.25635 * 7 6 5 25 25 H 4.52032 * 14.03921 * 359.97438 * 4 2 1 26 26 H 1.07999 * 119.94405 * 0.02562 * 4 3 2 27 27 H 1.08002 * 119.85895 * 179.97438 * 5 4 3 28 28 H 1.08006 * 119.92272 * 180.02562 * 6 5 4 29 29 H 1.08008 * 120.01721 * 0.02562 * 9 8 7 30 30 H 1.08001 * 119.87623 * 180.27366 * 10 9 8 31 31 H 1.08003 * 119.99364 * 180.02562 * 13 11 10 32 32 H 0.97000 * 120.00076 * 180.02562 * 19 18 16 33 33 H 1.08008 * 120.13099 * 179.72239 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3053 1.0776 -0.5484 5 6 4.6858 1.0787 -0.5492 6 6 5.3834 0.0160 -0.0090 7 6 4.6965 -1.0656 0.5418 8 6 5.4477 -2.2056 1.1206 9 6 5.1390 -2.6706 2.3968 10 6 5.8363 -3.7351 2.9299 11 6 6.8528 -4.3378 2.2044 12 9 7.5344 -5.3760 2.7361 13 6 7.1717 -3.8806 0.9384 14 6 6.4735 -2.8153 0.3889 15 8 6.7848 -2.3649 -0.8523 16 6 7.8575 -2.9182 -1.4529 17 1 8.3765 -3.7397 -0.9814 18 6 8.2945 -2.4326 -2.6758 19 7 7.6621 -1.4322 -3.2503 20 14 9.7812 -3.1987 -3.5077 21 1 9.5172 -4.6370 -3.7664 22 1 10.0411 -2.5043 -4.7945 23 1 10.9670 -3.0644 -2.6239 24 6 3.3047 -1.0758 0.5418 25 1 -1.0500 -0.0011 0.0000 26 1 2.7653 1.9112 -0.9726 27 1 5.2226 1.9137 -0.9748 28 1 6.4634 0.0231 -0.0123 29 1 4.3508 -2.2012 2.9670 30 1 5.5927 -4.0972 3.9178 31 1 7.9640 -4.3536 0.3772 32 1 7.9676 -1.0926 -4.1060 33 1 2.7687 -1.9135 0.9632 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241920194.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:12 Heat of formation + Delta-G solvation = 27.067734 kcal Electronic energy + Delta-G solvation = -20411.036495 eV Core-core repulsion = 17090.265799 eV Total energy + Delta-G solvation = -3320.770696 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.080 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -48.35659 -39.57157 -38.31329 -36.39457 -33.64744 -32.46397 -31.75263 -29.89463 -29.43302 -27.95888 -25.54814 -23.03627 -22.93884 -21.67399 -20.83048 -18.54245 -18.35113 -17.37384 -16.23748 -15.60085 -15.38496 -15.23380 -15.08233 -14.56704 -14.32598 -14.24351 -13.65678 -13.36003 -13.23934 -13.14822 -12.83724 -12.36772 -11.96165 -11.67194 -11.38633 -11.06617 -10.98999 -10.87527 -10.71685 -10.66926 -10.53491 -10.23741 -9.67201 -8.99155 -8.70414 -8.20269 -7.94261 -7.29698 -6.60680 -4.19892 1.28943 1.53360 2.06711 2.11547 2.89360 3.06482 3.06872 3.09773 3.32143 3.83989 4.18862 4.38283 4.50464 4.79369 4.93881 5.07576 5.19724 5.35713 5.46848 5.54421 5.67378 5.75823 5.89975 5.91230 6.08293 6.28802 6.38082 6.48300 6.59310 6.76348 6.81914 6.86943 6.89908 6.97244 7.09238 7.24551 7.40254 7.56727 7.67885 7.81925 8.83253 9.46430 10.54786 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.011974 B = 0.006477 C = 0.004467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2337.820225 B = 4321.814647 C = 6267.194489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.126 4.126 3 C -0.012 4.012 4 C -0.103 4.103 5 C -0.116 4.116 6 C -0.063 4.063 7 C -0.013 4.013 8 C -0.143 4.143 9 C -0.033 4.033 10 C -0.249 4.249 11 C 0.145 3.855 12 F -0.151 7.151 13 C -0.271 4.271 14 C 0.186 3.814 15 O -0.152 6.152 16 C -0.399 4.399 17 H 0.094 0.906 18 C 0.046 3.954 19 N -0.849 5.849 20 Si 0.941 3.059 21 H -0.269 1.269 22 H -0.276 1.276 23 H -0.268 1.268 24 C -0.089 4.089 25 H 0.221 0.779 26 H 0.118 0.882 27 H 0.124 0.876 28 H 0.130 0.870 29 H 0.125 0.875 30 H 0.121 0.879 31 H 0.141 0.859 32 H 0.273 0.727 33 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.241 2.191 6.293 9.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.126 4.126 3 C -0.012 4.012 4 C -0.121 4.121 5 C -0.134 4.134 6 C -0.081 4.081 7 C -0.013 4.013 8 C -0.145 4.145 9 C -0.051 4.051 10 C -0.269 4.269 11 C 0.126 3.874 12 F -0.130 7.130 13 C -0.291 4.291 14 C 0.129 3.871 15 O -0.053 6.053 16 C -0.475 4.475 17 H 0.111 0.889 18 C -0.160 4.160 19 N -0.481 5.481 20 Si 0.765 3.235 21 H -0.194 1.194 22 H -0.201 1.201 23 H -0.193 1.193 24 C -0.107 4.107 25 H 0.237 0.763 26 H 0.136 0.864 27 H 0.142 0.858 28 H 0.148 0.852 29 H 0.143 0.857 30 H 0.139 0.861 31 H 0.159 0.841 32 H 0.083 0.917 33 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -6.279 2.479 5.901 8.966 hybrid contribution 0.756 -0.759 -0.429 1.154 sum -5.524 1.720 5.472 7.963 Atomic orbital electron populations 1.24727 0.95637 1.00726 1.01350 1.20212 0.92101 1.00188 1.00070 1.15778 0.86119 0.96207 1.03067 1.21071 0.94218 0.97352 0.99463 1.20951 0.93475 0.99126 0.99865 1.21417 1.00756 0.91793 0.94147 1.18440 0.91784 0.93257 0.97775 1.17839 1.01096 1.00249 0.95295 1.20544 0.97305 0.94170 0.93081 1.20457 1.01902 1.02618 1.01874 1.17529 0.92009 0.85563 0.92281 1.91421 1.78866 1.56250 1.86421 1.20989 1.07937 1.03562 0.96596 1.18952 0.91652 0.90810 0.85649 1.84004 1.43451 1.56117 1.21718 1.21354 1.05455 1.17146 1.03508 0.88890 1.25294 0.98883 0.96024 0.95810 1.70027 1.38548 1.22905 1.16666 0.85779 0.79976 0.79132 0.78633 1.19356 1.20120 1.19314 1.21179 0.93101 0.97042 0.99353 0.76259 0.86351 0.85767 0.85209 0.85732 0.86102 0.84129 0.91671 0.86007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.58 19.25 29.55 0.57 -2.01 16 2 C -0.13 -1.92 13.23 -38.84 -0.51 -2.44 16 3 C -0.01 -0.20 5.72 -107.06 -0.61 -0.81 16 4 C -0.10 -1.66 9.74 -39.13 -0.38 -2.04 16 5 C -0.12 -1.98 10.02 -39.69 -0.40 -2.38 16 6 C -0.06 -1.23 8.77 -39.17 -0.34 -1.57 16 7 C -0.01 -0.24 5.27 -104.95 -0.55 -0.80 16 8 C -0.14 -2.87 5.48 -104.72 -0.57 -3.45 16 9 C -0.03 -0.56 9.51 -39.29 -0.37 -0.93 16 10 C -0.25 -4.27 10.01 -39.52 -0.40 -4.67 16 11 C 0.15 2.80 7.29 -39.39 -0.29 2.51 16 12 F -0.15 -2.80 17.26 2.25 0.04 -2.76 16 13 C -0.27 -5.80 9.14 -39.37 -0.36 -6.16 16 14 C 0.19 4.24 6.55 -38.76 -0.25 3.99 16 15 O -0.15 -3.98 8.10 0.35 0.00 -3.98 16 16 C -0.40 -10.47 9.49 30.88 0.29 -10.17 16 17 H 0.09 2.28 5.21 -52.48 -0.27 2.01 16 18 C 0.05 1.20 5.49 -17.52 -0.10 1.10 16 19 N -0.85 -23.22 13.67 55.48 0.76 -22.46 16 20 Si 0.94 19.57 29.55 -169.99 -5.02 14.55 16 21 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 22 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 23 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 24 C -0.09 -1.56 9.22 -38.84 -0.36 -1.92 16 25 H 0.22 1.74 7.80 -54.09 -0.42 1.32 16 26 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16 27 H 0.12 1.84 8.06 -52.49 -0.42 1.42 16 28 H 0.13 2.71 7.68 -52.48 -0.40 2.31 16 29 H 0.12 1.77 8.05 -52.48 -0.42 1.34 16 30 H 0.12 1.75 8.06 -52.49 -0.42 1.33 16 31 H 0.14 3.03 5.64 -52.48 -0.30 2.73 16 32 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 33 H 0.12 1.95 8.05 -52.48 -0.42 1.53 16 LS Contribution 308.99 15.07 4.66 4.66 Total: -1.00 -28.45 308.99 -6.85 -35.29 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -2.64 Total: 6.42 kcal Atomic # 6 Polarization: -27.09 SS G_CDS: -4.64 Total: -31.73 kcal Atomic # 7 Polarization: -23.22 SS G_CDS: 0.76 Total: -22.46 kcal Atomic # 8 Polarization: -3.98 SS G_CDS: 0.00 Total: -3.98 kcal Atomic # 9 Polarization: -2.80 SS G_CDS: 0.04 Total: -2.76 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.02 Total: 14.55 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -28.45 -6.85 -35.29 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241920194.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.361 kcal (2) G-P(sol) polarization free energy of solvation -28.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds