Wall clock time and date at job start Tue Mar 31 2020 06:43:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30846 * 1 3 3 Si 1.86798 * 120.00007 * 2 1 4 4 H 1.48503 * 109.46865 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47067 * 300.00054 * 3 2 1 6 6 H 1.48500 * 109.47128 * 60.00479 * 3 2 1 7 7 C 1.39932 * 119.99984 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00224 * 197.81975 * 7 2 1 9 9 C 1.41323 * 119.99951 * 17.81508 * 7 2 1 10 10 C 1.40787 * 120.19699 * 24.65504 * 9 7 2 11 11 C 1.37642 * 120.06041 * 180.02562 * 10 9 7 12 12 C 1.38451 * 120.48276 * 359.97438 * 11 10 9 13 13 C 1.39743 * 120.39740 * 359.97438 * 12 11 10 14 14 C 1.47807 * 120.04123 * 179.97438 * 13 12 11 15 15 C 1.31105 * 118.07366 * 104.97632 * 14 13 12 16 16 C 1.50093 * 123.85232 * 180.45535 * 15 14 13 17 17 C 1.53005 * 110.13438 * 342.84524 * 16 15 14 18 18 F 1.39901 * 109.63320 * 169.38539 * 17 16 15 19 19 F 1.39904 * 109.63201 * 289.77216 * 17 16 15 20 20 C 1.53370 * 108.49859 * 49.68011 * 17 16 15 21 21 C 1.50091 * 118.07600 * 285.00350 * 14 13 12 22 22 C 1.39305 * 119.92521 * 0.27162 * 13 12 11 23 23 F 1.35099 * 120.23898 * 179.72174 * 22 13 12 24 24 H 0.97000 * 119.99936 * 359.97438 * 1 2 3 25 25 H 1.07999 * 119.97396 * 359.97438 * 10 9 7 26 26 H 1.08008 * 119.76265 * 179.97438 * 11 10 9 27 27 H 1.08004 * 119.80681 * 180.02562 * 12 11 10 28 28 H 1.08001 * 118.07239 * 0.45893 * 15 14 13 29 29 H 1.08999 * 109.36034 * 222.63659 * 16 15 14 30 30 H 1.09000 * 109.35486 * 103.04456 * 16 15 14 31 31 H 1.08997 * 109.63469 * 51.79704 * 20 17 16 32 32 H 1.09001 * 109.63147 * 172.39747 * 20 17 16 33 33 H 1.08996 * 109.35765 * 42.60588 * 21 14 13 34 34 H 1.08998 * 109.24705 * 282.94952 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 3.7025 1.3463 -0.0006 5 1 1.8837 2.3964 -1.2124 6 1 1.8838 2.3964 1.2126 7 6 2.0081 -1.2118 -0.0005 8 1 3.0493 -1.2345 0.2857 9 6 1.3523 -2.4062 -0.3755 10 6 0.2234 -2.3605 -1.2156 11 6 -0.4134 -3.5255 -1.5786 12 6 0.0478 -4.7492 -1.1238 13 6 1.1671 -4.8174 -0.2901 14 6 1.6524 -6.1280 0.1913 15 6 2.7372 -6.6225 -0.3542 16 6 3.3372 -7.9442 0.0277 17 6 2.7841 -8.4031 1.3785 18 9 3.1561 -9.7314 1.6121 19 9 3.2914 -7.5873 2.3957 20 6 1.2547 -8.2953 1.3401 21 6 0.8740 -6.8147 1.2754 22 6 1.8215 -3.6485 0.0920 23 9 2.9009 -3.7067 0.9023 24 1 -0.4850 0.8400 0.0004 25 1 -0.1437 -1.4105 -1.5748 26 1 -1.2793 -3.4848 -2.2229 27 1 -0.4601 -5.6565 -1.4158 28 1 3.2279 -6.0448 -1.1235 29 1 4.4203 -7.8431 0.0962 30 1 3.0929 -8.6853 -0.7333 31 1 0.8733 -8.8104 0.4586 32 1 0.8334 -8.7426 2.2404 33 1 -0.1921 -6.7245 1.0672 34 1 1.0966 -6.3422 2.2320 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242232372.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:58 Heat of formation + Delta-G solvation = -132.501072 kcal Electronic energy + Delta-G solvation = -21839.215470 eV Core-core repulsion = 18093.128916 eV Total energy + Delta-G solvation = -3746.086554 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.093 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -48.85581 -47.24052 -46.85693 -38.26525 -36.71144 -33.86478 -31.33316 -30.99400 -29.66744 -27.53615 -25.38633 -23.59096 -22.53038 -20.91003 -20.68379 -18.32853 -17.50468 -17.17567 -16.34721 -16.07626 -15.61412 -15.33257 -14.81760 -14.53722 -14.09473 -13.94628 -13.82179 -13.40432 -13.13207 -13.01302 -12.91130 -12.60325 -12.47304 -12.17663 -11.99501 -11.78988 -11.62391 -11.27099 -11.14629 -10.93759 -10.77997 -10.49566 -10.21248 -9.88991 -9.59765 -9.29518 -8.54378 -7.57355 -7.35191 -6.89027 -4.48398 2.32214 2.61028 2.71662 3.02415 3.07318 3.10466 3.80038 3.85707 4.10727 4.40534 4.44577 4.48170 5.09650 5.17324 5.28887 5.34899 5.44648 5.58747 5.64539 5.75760 5.84021 5.92095 6.09515 6.15671 6.23851 6.48908 6.67433 6.88183 7.00215 7.08488 7.24251 7.41696 7.52683 7.84242 7.90714 8.00994 8.45348 8.66231 8.75369 10.04302 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.030474 B = 0.004541 C = 0.004188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.593232 B = 6164.952745 C = 6684.009582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.077 3.923 3 Si 0.912 3.088 4 H -0.259 1.259 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.454 4.454 8 H 0.083 0.917 9 C 0.085 3.915 10 C -0.144 4.144 11 C -0.112 4.112 12 C -0.204 4.204 13 C -0.073 4.073 14 C -0.046 4.046 15 C -0.168 4.168 16 C -0.116 4.116 17 C 0.284 3.716 18 F -0.207 7.207 19 F -0.193 7.193 20 C -0.153 4.153 21 C -0.080 4.080 22 C -0.011 4.011 23 F -0.157 7.157 24 H 0.283 0.717 25 H 0.125 0.875 26 H 0.095 0.905 27 H 0.097 0.903 28 H 0.118 0.882 29 H 0.092 0.908 30 H 0.099 0.901 31 H 0.095 0.905 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.840 -10.617 -0.631 10.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.142 4.142 3 Si 0.736 3.264 4 H -0.182 1.182 5 H -0.195 1.195 6 H -0.198 1.198 7 C -0.482 4.482 8 H 0.101 0.899 9 C 0.081 3.919 10 C -0.164 4.164 11 C -0.130 4.130 12 C -0.224 4.224 13 C -0.074 4.074 14 C -0.046 4.046 15 C -0.186 4.186 16 C -0.153 4.153 17 C 0.248 3.752 18 F -0.188 7.188 19 F -0.174 7.174 20 C -0.191 4.191 21 C -0.117 4.117 22 C -0.031 4.031 23 F -0.136 7.136 24 H 0.094 0.906 25 H 0.143 0.857 26 H 0.114 0.886 27 H 0.115 0.885 28 H 0.136 0.864 29 H 0.110 0.890 30 H 0.117 0.883 31 H 0.113 0.887 32 H 0.106 0.894 33 H 0.108 0.892 34 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.705 -10.457 -0.549 10.495 hybrid contribution 0.561 0.771 0.292 0.997 sum 1.265 -9.686 -0.257 9.772 Atomic orbital electron populations 1.69819 1.07642 1.29510 1.34412 1.25909 0.94757 1.01503 0.92012 0.86194 0.81114 0.80456 0.78682 1.18213 1.19527 1.19796 1.19552 0.98459 0.90941 1.39295 0.89879 1.17572 0.92686 0.90726 0.90872 1.21235 0.98130 0.97390 0.99625 1.20641 0.99111 0.92905 1.00369 1.20201 0.99336 0.96580 1.06236 1.18402 0.97841 0.89964 1.01158 1.19641 0.95026 0.94276 0.95616 1.21928 0.97456 0.96161 1.03047 1.21295 1.02128 0.97776 0.94117 1.21130 0.94637 0.72579 0.86821 1.92981 1.93235 1.36930 1.95605 1.93025 1.88960 1.72747 1.62701 1.22594 0.91790 0.99721 1.05008 1.20384 1.00830 0.91729 0.98733 1.17892 0.90880 0.93702 1.00623 1.91289 1.53504 1.97202 1.71633 0.90627 0.85691 0.88634 0.88492 0.86430 0.88978 0.88259 0.88668 0.89389 0.89224 0.89630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.71 10.96 55.55 0.61 -19.10 16 2 C 0.08 1.89 5.14 -17.34 -0.09 1.80 16 3 Si 0.91 18.38 29.60 -169.99 -5.03 13.35 16 4 H -0.26 -5.24 7.11 56.52 0.40 -4.83 16 5 H -0.27 -5.29 7.11 56.52 0.40 -4.88 16 6 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 7 C -0.45 -12.04 8.78 -37.78 -0.33 -12.37 16 8 H 0.08 2.20 7.74 -52.48 -0.41 1.80 16 9 C 0.08 2.23 5.57 -106.80 -0.60 1.63 16 10 C -0.14 -3.57 8.69 -38.84 -0.34 -3.91 16 11 C -0.11 -2.44 10.00 -39.72 -0.40 -2.84 16 12 C -0.20 -4.23 9.78 -38.94 -0.38 -4.62 16 13 C -0.07 -1.57 5.03 -105.02 -0.53 -2.10 16 14 C -0.05 -0.82 4.83 -102.75 -0.50 -1.31 16 15 C -0.17 -2.74 9.41 -36.35 -0.34 -3.08 16 16 C -0.12 -1.51 5.61 -28.17 -0.16 -1.67 16 17 C 0.28 3.93 2.13 -26.54 -0.06 3.88 16 18 F -0.21 -2.82 17.08 2.25 0.04 -2.78 16 19 F -0.19 -3.20 16.35 2.25 0.04 -3.16 16 20 C -0.15 -1.88 5.60 -26.54 -0.15 -2.03 16 21 C -0.08 -1.21 5.44 -28.17 -0.15 -1.36 16 22 C -0.01 -0.27 7.28 -38.22 -0.28 -0.55 16 23 F -0.16 -4.00 16.27 2.25 0.04 -3.96 16 24 H 0.28 6.36 8.30 -40.82 -0.34 6.02 16 25 H 0.13 3.16 6.16 -52.49 -0.32 2.84 16 26 H 0.10 1.82 8.06 -52.48 -0.42 1.40 16 27 H 0.10 1.75 8.06 -52.48 -0.42 1.33 16 28 H 0.12 2.01 7.94 -52.49 -0.42 1.59 16 29 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 30 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 31 H 0.09 1.00 8.12 -51.93 -0.42 0.58 16 32 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.09 1.39 7.93 -51.93 -0.41 0.98 16 LS Contribution 299.73 15.07 4.52 4.52 Total: -1.00 -27.42 299.73 -7.74 -35.15 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -3.65 Total: 4.51 kcal Atomic # 6 Polarization: -24.23 SS G_CDS: -4.29 Total: -28.52 kcal Atomic # 7 Polarization: -19.71 SS G_CDS: 0.61 Total: -19.10 kcal Atomic # 9 Polarization: -10.01 SS G_CDS: 0.11 Total: -9.90 kcal Atomic # 14 Polarization: 18.38 SS G_CDS: -5.03 Total: 13.35 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -27.42 -7.74 -35.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242232372.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.350 kcal (2) G-P(sol) polarization free energy of solvation -27.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds