Wall clock time and date at job start Tue Mar 31 2020 06:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30813 * 1 3 3 Si 1.86806 * 119.99624 * 2 1 4 4 H 1.48498 * 109.47023 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47112 * 119.99952 * 3 2 1 6 6 H 1.48499 * 109.46862 * 239.99852 * 3 2 1 7 7 C 1.40018 * 120.00316 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99981 * 154.59856 * 7 2 1 9 9 C 1.40857 * 120.00148 * 334.60105 * 7 2 1 10 10 C 1.40996 * 120.11048 * 334.36101 * 9 7 2 11 11 C 1.36106 * 119.92134 * 179.69551 * 10 9 7 12 12 C 1.40260 * 120.16029 * 0.60230 * 11 10 9 13 13 C 1.47301 * 119.88199 * 179.69317 * 12 11 10 14 14 C 1.31622 * 118.10974 * 244.71537 * 13 12 11 15 15 C 1.50090 * 123.78750 * 180.14971 * 14 13 12 16 16 C 1.53015 * 110.18919 * 343.31350 * 15 14 13 17 17 F 1.39901 * 109.63038 * 289.84694 * 16 15 14 18 18 F 1.39902 * 109.62792 * 169.25932 * 16 15 14 19 19 C 1.53363 * 108.51243 * 49.55418 * 16 15 14 20 20 C 1.50094 * 118.11078 * 64.98147 * 13 12 11 21 21 C 1.40022 * 120.23219 * 359.67374 * 12 11 10 22 22 C 1.36481 * 120.07293 * 0.02562 * 21 12 11 23 23 F 1.35100 * 120.07871 * 179.97438 * 22 21 12 24 24 H 0.97000 * 119.99618 * 174.17928 * 1 2 3 25 25 H 1.08005 * 120.03783 * 359.97438 * 10 9 7 26 26 H 1.08007 * 119.91684 * 180.29587 * 11 10 9 27 27 H 1.07999 * 118.10714 * 0.41908 * 14 13 12 28 28 H 1.08994 * 109.50111 * 222.99042 * 15 14 13 29 29 H 1.09000 * 109.16989 * 103.42706 * 15 14 13 30 30 H 1.08998 * 109.63439 * 172.23819 * 19 16 15 31 31 H 1.08997 * 109.62747 * 51.64871 * 19 16 15 32 32 H 1.09002 * 109.36026 * 283.03128 * 20 13 12 33 33 H 1.08999 * 109.36040 * 42.75589 * 20 13 12 34 34 H 1.07998 * 119.97002 * 179.97438 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3081 0.0000 0.0000 3 14 2.2420 1.6178 0.0000 4 1 1.2770 2.7465 -0.0006 5 1 3.0958 1.6966 1.2125 6 1 3.0958 1.6965 -1.2125 7 6 2.0083 -1.2126 0.0005 8 1 3.0100 -1.2579 -0.4006 9 6 1.4062 -2.3733 0.5243 10 6 0.3936 -2.2663 1.4995 11 6 -0.1899 -3.3902 1.9985 12 6 0.2225 -4.6550 1.5540 13 6 -0.4085 -5.8675 2.1031 14 6 0.3387 -6.6908 2.8075 15 6 -0.1707 -7.9619 3.4220 16 6 -1.6999 -7.9478 3.4732 17 9 -2.1299 -7.0129 4.4210 18 9 -2.1704 -9.2200 3.8155 19 6 -2.2299 -7.5580 2.0878 20 6 -1.8651 -6.0960 1.8219 21 6 1.2315 -4.7691 0.5900 22 6 1.8189 -3.6482 0.0787 23 9 2.7928 -3.7582 -0.8511 24 1 -0.4849 -0.8357 -0.0852 25 1 0.0782 -1.2936 1.8470 26 1 -0.9689 -3.3080 2.7421 27 1 1.3775 -6.4349 2.9553 28 1 0.2237 -8.0607 4.4332 29 1 0.1629 -8.8084 2.8218 30 1 -3.3133 -7.6752 2.0639 31 1 -1.7731 -8.1932 1.3290 32 1 -2.4629 -5.4514 2.4663 33 1 -2.0735 -5.8576 0.7789 34 1 1.5460 -5.7451 0.2511 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242233733.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:02 Heat of formation + Delta-G solvation = -140.725124 kcal Electronic energy + Delta-G solvation = -21499.624350 eV Core-core repulsion = 17753.181175 eV Total energy + Delta-G solvation = -3746.443175 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.093 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -48.92084 -47.39015 -46.93872 -38.50478 -36.87604 -34.18363 -31.15912 -30.99075 -29.39986 -28.42317 -25.06683 -23.57203 -22.42390 -21.15282 -20.80743 -18.27901 -18.15906 -17.45567 -16.50871 -16.27307 -15.30565 -15.18454 -14.85716 -14.42069 -14.17825 -14.09196 -13.94000 -13.68958 -13.23669 -13.02913 -12.92986 -12.68228 -12.57248 -12.48299 -12.21522 -11.88293 -11.70302 -11.33338 -11.26767 -10.75378 -10.66008 -10.47346 -10.23309 -10.09376 -9.64245 -9.21266 -8.56647 -7.84760 -7.65151 -7.35620 -4.62929 2.17453 2.60754 2.66552 3.06864 3.14892 3.27563 3.74777 3.87152 4.05955 4.30308 4.38853 4.42416 5.04528 5.14877 5.22320 5.30776 5.35667 5.54226 5.61000 5.70492 5.79161 5.87548 5.96498 6.05785 6.10224 6.29603 6.64348 6.78371 6.84848 7.16745 7.20349 7.39412 7.52927 7.62208 7.69560 7.83943 8.03881 8.47354 8.60350 9.80342 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.033733 B = 0.003978 C = 0.003742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.844586 B = 7037.136921 C = 7480.375363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.779 5.779 2 C 0.038 3.962 3 Si 1.068 2.932 4 H -0.271 1.271 5 H -0.272 1.272 6 H -0.273 1.273 7 C -0.497 4.497 8 H 0.083 0.917 9 C 0.075 3.925 10 C -0.209 4.209 11 C -0.062 4.062 12 C -0.200 4.200 13 C -0.022 4.022 14 C -0.189 4.189 15 C -0.115 4.115 16 C 0.285 3.715 17 F -0.196 7.196 18 F -0.206 7.206 19 C -0.154 4.154 20 C -0.082 4.082 21 C -0.087 4.087 22 C -0.036 4.036 23 F -0.163 7.163 24 H 0.302 0.698 25 H 0.113 0.887 26 H 0.096 0.904 27 H 0.117 0.883 28 H 0.089 0.911 29 H 0.096 0.904 30 H 0.086 0.914 31 H 0.094 0.906 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.002 -9.611 3.868 10.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.401 5.401 2 C -0.185 4.185 3 Si 0.890 3.110 4 H -0.196 1.196 5 H -0.197 1.197 6 H -0.198 1.198 7 C -0.524 4.524 8 H 0.101 0.899 9 C 0.071 3.929 10 C -0.228 4.228 11 C -0.081 4.081 12 C -0.202 4.202 13 C -0.022 4.022 14 C -0.207 4.207 15 C -0.152 4.152 16 C 0.249 3.751 17 F -0.177 7.177 18 F -0.187 7.187 19 C -0.192 4.192 20 C -0.119 4.119 21 C -0.106 4.106 22 C -0.056 4.056 23 F -0.143 7.143 24 H 0.116 0.884 25 H 0.131 0.869 26 H 0.115 0.885 27 H 0.135 0.865 28 H 0.108 0.892 29 H 0.114 0.886 30 H 0.105 0.895 31 H 0.113 0.887 32 H 0.101 0.899 33 H 0.106 0.894 34 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -3.253 -7.965 3.912 9.451 hybrid contribution 0.290 -1.841 -0.063 1.865 sum -2.963 -9.806 3.849 10.943 Atomic orbital electron populations 1.70464 1.08222 1.34614 1.26815 1.27194 0.95595 1.04566 0.91172 0.83593 0.75708 0.73348 0.78342 1.19562 1.19690 1.19831 1.20607 1.03241 0.93979 1.34572 0.89873 1.17727 0.92333 0.91323 0.91474 1.20658 1.03336 0.97669 1.01167 1.20422 0.97914 0.91765 0.97994 1.17800 1.04279 0.91517 1.06560 1.19555 0.93574 0.93894 0.95215 1.22093 1.00734 0.95688 1.02224 1.21273 0.90946 0.99520 1.03474 1.21132 0.94370 0.72166 0.87437 1.93002 1.91510 1.65710 1.67462 1.92984 1.90460 1.41571 1.93731 1.22604 1.02801 0.99629 0.94206 1.20433 0.94425 0.93741 1.03330 1.20301 0.96730 0.95994 0.97555 1.17323 0.96708 0.94372 0.97228 1.91283 1.61525 1.96901 1.64545 0.88420 0.86886 0.88547 0.86542 0.89214 0.88576 0.89511 0.88746 0.89888 0.89378 0.88010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.62 12.31 55.55 0.68 -18.94 16 2 C 0.04 0.93 4.93 -17.32 -0.09 0.85 16 3 Si 1.07 20.59 30.00 -169.99 -5.10 15.49 16 4 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 5 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16 6 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 7 C -0.50 -12.92 8.68 -37.92 -0.33 -13.25 16 8 H 0.08 2.16 7.79 -52.49 -0.41 1.75 16 9 C 0.08 1.94 5.30 -106.73 -0.57 1.37 16 10 C -0.21 -5.02 7.87 -39.30 -0.31 -5.33 16 11 C -0.06 -1.34 9.66 -39.59 -0.38 -1.72 16 12 C -0.20 -4.06 5.12 -104.78 -0.54 -4.59 16 13 C -0.02 -0.37 5.22 -103.09 -0.54 -0.91 16 14 C -0.19 -2.84 9.32 -36.47 -0.34 -3.18 16 15 C -0.11 -1.40 5.61 -28.17 -0.16 -1.56 16 16 C 0.28 3.68 2.14 -26.54 -0.06 3.63 16 17 F -0.20 -2.93 16.32 2.25 0.04 -2.89 16 18 F -0.21 -2.70 17.08 2.25 0.04 -2.67 16 19 C -0.15 -1.81 5.60 -26.54 -0.15 -1.96 16 20 C -0.08 -1.16 5.38 -28.17 -0.15 -1.31 16 21 C -0.09 -1.88 9.56 -39.55 -0.38 -2.26 16 22 C -0.04 -0.90 7.25 -39.08 -0.28 -1.18 16 23 F -0.16 -4.07 16.70 2.25 0.04 -4.03 16 24 H 0.30 7.77 6.69 -40.82 -0.27 7.49 16 25 H 0.11 2.78 6.48 -52.48 -0.34 2.44 16 26 H 0.10 1.87 8.06 -52.48 -0.42 1.45 16 27 H 0.12 1.82 7.95 -52.49 -0.42 1.40 16 28 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 29 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 30 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.09 0.99 8.12 -51.93 -0.42 0.56 16 32 H 0.08 1.18 7.92 -51.93 -0.41 0.77 16 33 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.10 2.00 8.06 -52.49 -0.42 1.58 16 LS Contribution 299.01 15.07 4.51 4.51 Total: -1.00 -26.45 299.01 -7.67 -34.11 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -3.60 Total: 5.82 kcal Atomic # 6 Polarization: -27.14 SS G_CDS: -4.26 Total: -31.40 kcal Atomic # 7 Polarization: -19.62 SS G_CDS: 0.68 Total: -18.94 kcal Atomic # 9 Polarization: -9.71 SS G_CDS: 0.11 Total: -9.59 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.10 Total: 15.49 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -26.45 -7.67 -34.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242233733.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.613 kcal (2) G-P(sol) polarization free energy of solvation -26.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds