Wall clock time and date at job start Tue Mar 31 2020 06:43:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30855 * 1 3 3 Si 1.86809 * 119.99744 * 2 1 4 4 H 1.48496 * 109.46728 * 275.40802 * 3 2 1 5 5 H 1.48501 * 109.47210 * 35.40525 * 3 2 1 6 6 H 1.48499 * 109.47203 * 155.40872 * 3 2 1 7 7 C 1.39908 * 120.00248 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00012 * 341.68662 * 7 2 1 9 9 C 1.41329 * 119.99837 * 161.69439 * 7 2 1 10 10 C 1.40501 * 120.19554 * 330.11052 * 9 7 2 11 11 C 1.38876 * 119.63293 * 179.97438 * 10 9 7 12 12 C 1.47817 * 119.98324 * 179.97438 * 11 10 9 13 13 C 1.31099 * 118.07476 * 64.99996 * 12 11 10 14 14 C 1.50089 * 123.85284 * 180.41061 * 13 12 11 15 15 C 1.53017 * 110.13630 * 342.85733 * 14 13 12 16 16 F 1.39894 * 109.63295 * 169.38392 * 15 14 13 17 17 F 1.39894 * 109.63394 * 289.98156 * 15 14 13 18 18 C 1.53372 * 108.50123 * 49.67077 * 15 14 13 19 19 C 1.50092 * 118.07400 * 244.97869 * 12 11 10 20 20 C 1.40009 * 120.02958 * 0.25276 * 11 10 9 21 21 C 1.38185 * 120.39862 * 359.48521 * 20 11 10 22 22 C 1.38092 * 120.37391 * 0.51926 * 21 20 11 23 23 F 1.35095 * 120.02627 * 179.76303 * 22 21 20 24 24 H 0.96997 * 120.00613 * 359.97438 * 1 2 3 25 25 H 1.07997 * 120.18358 * 359.97438 * 10 9 7 26 26 H 1.08002 * 118.07479 * 0.42806 * 13 12 11 27 27 H 1.09001 * 109.36480 * 103.06522 * 14 13 12 28 28 H 1.09004 * 109.35948 * 222.65560 * 14 13 12 29 29 H 1.08993 * 109.62359 * 172.40668 * 18 15 14 30 30 H 1.08994 * 109.65550 * 51.79615 * 18 15 14 31 31 H 1.09002 * 109.35490 * 283.04677 * 19 12 11 32 32 H 1.09002 * 109.36086 * 42.76863 * 19 12 11 33 33 H 1.08003 * 119.79711 * 179.74319 * 20 11 10 34 34 H 1.08004 * 119.81388 * 180.25366 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6179 0.0000 4 1 2.3757 2.1124 -1.3938 5 1 1.5017 2.6171 0.8111 6 1 3.5925 1.4101 0.5826 7 6 2.0081 -1.2116 0.0005 8 1 1.5092 -2.1231 0.2948 9 6 3.3678 -1.2426 -0.3839 10 6 3.8599 -0.3140 -1.3164 11 6 5.1981 -0.3548 -1.6854 12 6 5.7239 0.6181 -2.6662 13 6 5.7351 1.8859 -2.3325 14 6 6.2308 2.9822 -3.2297 15 6 7.0844 2.3957 -4.3560 16 9 7.3391 3.3818 -5.3151 17 9 8.2917 1.9210 -3.8325 18 6 6.3117 1.2378 -4.9998 19 6 6.2140 0.0965 -3.9854 20 6 6.0481 -1.3207 -1.1332 21 6 5.5667 -2.2312 -0.2120 22 6 4.2390 -2.2058 0.1668 23 9 3.7747 -3.1023 1.0644 24 1 -0.4851 0.8400 0.0004 25 1 3.2011 0.4274 -1.7438 26 1 5.3661 2.1573 -1.3544 27 1 5.3796 3.5106 -3.6590 28 1 6.8314 3.6815 -2.6478 29 1 6.8409 0.8937 -5.8883 30 1 5.3107 1.5719 -5.2726 31 1 7.1976 -0.3543 -3.8528 32 1 5.5188 -0.6563 -4.3572 33 1 7.0872 -1.3516 -1.4260 34 1 6.2317 -2.9697 0.2111 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242234115.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:55 Heat of formation + Delta-G solvation = -132.394251 kcal Electronic energy + Delta-G solvation = -21863.678474 eV Core-core repulsion = 18117.596552 eV Total energy + Delta-G solvation = -3746.081921 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.093 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -48.96958 -47.44412 -46.98624 -38.66851 -36.77486 -33.82312 -31.53240 -31.15887 -30.58768 -27.61898 -25.32361 -23.67781 -22.70464 -21.66561 -20.47585 -18.33669 -17.65301 -17.34113 -16.56852 -16.43707 -15.87325 -15.32603 -15.03779 -14.68374 -14.25292 -14.12819 -13.87889 -13.47537 -13.31546 -13.12700 -13.02734 -12.74113 -12.64852 -12.34310 -12.16357 -12.12759 -11.99762 -11.62084 -11.36337 -10.93708 -10.73402 -10.43244 -10.32623 -9.98304 -9.83182 -9.32402 -8.70405 -7.91215 -7.47844 -7.09757 -4.63005 1.98386 2.40816 2.52572 2.97978 3.09301 3.18361 3.69270 3.84034 3.99751 4.24612 4.31711 4.37472 4.96176 5.05807 5.16386 5.17358 5.29752 5.45800 5.55777 5.61331 5.66146 5.79247 5.83881 5.98340 6.02372 6.19005 6.36849 6.58307 6.69698 6.94755 7.04906 7.20269 7.28926 7.45397 7.56692 7.85508 8.19781 8.42463 8.59394 9.92033 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.019769 B = 0.005918 C = 0.004900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.986377 B = 4730.590847 C = 5712.854258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.085 3.915 3 Si 0.905 3.095 4 H -0.264 1.264 5 H -0.287 1.287 6 H -0.242 1.242 7 C -0.438 4.438 8 H 0.096 0.904 9 C 0.066 3.934 10 C -0.202 4.202 11 C -0.033 4.033 12 C -0.052 4.052 13 C -0.171 4.171 14 C -0.119 4.119 15 C 0.286 3.714 16 F -0.205 7.205 17 F -0.196 7.196 18 C -0.156 4.156 19 C -0.079 4.079 20 C -0.204 4.204 21 C -0.113 4.113 22 C -0.009 4.009 23 F -0.157 7.157 24 H 0.288 0.712 25 H 0.110 0.890 26 H 0.118 0.882 27 H 0.102 0.898 28 H 0.093 0.907 29 H 0.089 0.911 30 H 0.096 0.904 31 H 0.086 0.914 32 H 0.091 0.909 33 H 0.104 0.896 34 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.860 5.542 -7.724 13.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.135 4.135 3 Si 0.730 3.270 4 H -0.190 1.190 5 H -0.214 1.214 6 H -0.165 1.165 7 C -0.465 4.465 8 H 0.114 0.886 9 C 0.062 3.938 10 C -0.222 4.222 11 C -0.033 4.033 12 C -0.052 4.052 13 C -0.190 4.190 14 C -0.156 4.156 15 C 0.250 3.750 16 F -0.186 7.186 17 F -0.177 7.177 18 C -0.194 4.194 19 C -0.116 4.116 20 C -0.224 4.224 21 C -0.132 4.132 22 C -0.029 4.029 23 F -0.136 7.136 24 H 0.098 0.902 25 H 0.128 0.872 26 H 0.136 0.864 27 H 0.120 0.880 28 H 0.112 0.888 29 H 0.108 0.892 30 H 0.115 0.885 31 H 0.104 0.896 32 H 0.110 0.890 33 H 0.123 0.877 34 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 9.573 5.607 -7.673 13.489 hybrid contribution 0.204 0.645 0.200 0.705 sum 9.776 6.252 -7.473 13.803 Atomic orbital electron populations 1.69689 1.08089 1.30540 1.33802 1.26149 0.94768 1.01656 0.90901 0.86407 0.81517 0.79818 0.79232 1.19007 1.21432 1.16533 1.19412 0.92758 0.96597 1.37771 0.88621 1.17626 0.93260 0.91341 0.91540 1.20943 0.94277 1.04198 1.02760 1.18512 0.93518 0.95149 0.96129 1.19780 0.97430 0.93332 0.94697 1.22011 1.03921 0.92673 1.00347 1.21324 1.00109 0.98708 0.95471 1.21101 0.81709 0.86091 0.86116 1.92989 1.95082 1.64491 1.65991 1.92999 1.48539 1.88879 1.87242 1.22618 1.01958 0.94986 0.99798 1.20369 1.02778 0.97129 0.91279 1.20202 0.98311 0.99589 1.04272 1.20528 0.93649 0.99758 0.99233 1.17855 0.92209 0.96178 0.96668 1.91312 1.89631 1.66443 1.66177 0.90152 0.87198 0.86386 0.88031 0.88835 0.89240 0.88498 0.89574 0.89040 0.87745 0.87386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.72 13.93 55.55 0.77 -19.95 16 2 C 0.09 2.18 5.40 -17.34 -0.09 2.09 16 3 Si 0.90 19.79 24.52 -169.99 -4.17 15.62 16 4 H -0.26 -5.46 6.71 56.52 0.38 -5.08 16 5 H -0.29 -6.09 7.11 56.52 0.40 -5.69 16 6 H -0.24 -5.40 6.87 56.52 0.39 -5.02 16 7 C -0.44 -11.75 9.25 -37.78 -0.35 -12.10 16 8 H 0.10 2.75 7.97 -52.49 -0.42 2.33 16 9 C 0.07 1.65 5.11 -106.80 -0.55 1.10 16 10 C -0.20 -4.58 6.77 -38.49 -0.26 -4.84 16 11 C -0.03 -0.65 5.10 -105.08 -0.54 -1.19 16 12 C -0.05 -0.86 5.23 -102.74 -0.54 -1.40 16 13 C -0.17 -2.65 9.30 -36.35 -0.34 -2.99 16 14 C -0.12 -1.47 5.61 -28.17 -0.16 -1.63 16 15 C 0.29 3.60 2.14 -26.53 -0.06 3.55 16 16 F -0.20 -2.63 17.08 2.25 0.04 -2.59 16 17 F -0.20 -2.78 16.32 2.25 0.04 -2.74 16 18 C -0.16 -1.76 5.60 -26.53 -0.15 -1.91 16 19 C -0.08 -1.05 5.38 -28.17 -0.15 -1.20 16 20 C -0.20 -3.97 9.73 -38.94 -0.38 -4.35 16 21 C -0.11 -2.33 9.99 -39.65 -0.40 -2.72 16 22 C -0.01 -0.21 7.31 -38.57 -0.28 -0.50 16 23 F -0.16 -3.81 16.76 2.25 0.04 -3.77 16 24 H 0.29 6.72 8.30 -40.82 -0.34 6.38 16 25 H 0.11 2.48 4.75 -52.49 -0.25 2.23 16 26 H 0.12 1.96 7.94 -52.49 -0.42 1.54 16 27 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 29 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.10 1.01 8.12 -51.93 -0.42 0.59 16 31 H 0.09 1.10 7.92 -51.93 -0.41 0.69 16 32 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.10 1.77 8.06 -52.48 -0.42 1.35 16 34 H 0.11 1.95 8.06 -52.48 -0.42 1.52 16 LS Contribution 294.89 15.07 4.44 4.44 Total: -1.00 -27.02 294.89 -6.69 -33.71 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -3.62 Total: 3.35 kcal Atomic # 6 Polarization: -23.85 SS G_CDS: -4.23 Total: -28.08 kcal Atomic # 7 Polarization: -20.72 SS G_CDS: 0.77 Total: -19.95 kcal Atomic # 9 Polarization: -9.21 SS G_CDS: 0.11 Total: -9.10 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -4.17 Total: 15.62 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -27.02 -6.69 -33.71 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242234115.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.680 kcal (2) G-P(sol) polarization free energy of solvation -27.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds