Wall clock time and date at job start Tue Mar 31 2020 06:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30841 * 1 3 3 Si 1.86800 * 119.99736 * 2 1 4 4 H 1.48500 * 109.47223 * 239.99901 * 3 2 1 5 5 H 1.48500 * 109.46925 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47007 * 119.99657 * 3 2 1 7 7 C 1.39920 * 120.00007 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99787 * 197.74031 * 7 2 1 9 9 C 1.41431 * 120.00013 * 17.73281 * 7 2 1 10 10 C 1.40766 * 120.16401 * 204.38471 * 9 7 2 11 11 C 1.37916 * 120.01159 * 180.02562 * 10 9 7 12 12 F 1.35103 * 119.82396 * 180.02562 * 11 10 9 13 13 C 1.38612 * 120.35040 * 0.02562 * 11 10 9 14 14 C 1.39842 * 120.32986 * 0.02562 * 13 11 10 15 15 C 1.47844 * 120.01118 * 179.97438 * 14 13 11 16 16 C 1.31083 * 118.07442 * 114.97382 * 15 14 13 17 17 C 1.50086 * 123.85470 * 180.41172 * 16 15 14 18 18 C 1.53011 * 110.13999 * 342.86698 * 17 16 15 19 19 F 1.39901 * 109.63710 * 169.38369 * 18 17 16 20 20 F 1.39904 * 109.63131 * 289.97987 * 18 17 16 21 21 C 1.53083 * 108.42650 * 49.66433 * 18 17 16 22 22 C 1.50089 * 118.07156 * 295.00022 * 15 14 13 23 23 C 1.38976 * 119.98424 * 0.25322 * 14 13 11 24 24 H 0.96993 * 119.99924 * 0.02562 * 1 2 3 25 25 H 1.08005 * 119.99382 * 0.02562 * 10 9 7 26 26 H 1.08002 * 119.83999 * 179.97438 * 13 11 10 27 27 H 1.08003 * 118.07376 * 0.44031 * 16 15 14 28 28 H 1.08997 * 109.36100 * 103.07482 * 17 16 15 29 29 H 1.09008 * 109.35915 * 222.66034 * 17 16 15 30 30 H 1.09004 * 109.46906 * 172.33465 * 21 18 17 31 31 H 1.08994 * 109.65305 * 51.82956 * 21 18 17 32 32 H 1.08998 * 109.36472 * 283.04003 * 22 15 14 33 33 H 1.09005 * 109.36222 * 42.77252 * 22 15 14 34 34 H 1.08002 * 120.17413 * 179.72751 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.0961 1.6965 -1.2125 5 1 1.2772 2.7464 -0.0006 6 1 3.0960 1.6965 1.2125 7 6 2.0080 -1.2117 -0.0005 8 1 3.0495 -1.2341 0.2844 9 6 1.3513 -2.4073 -0.3741 10 6 1.8274 -3.6494 0.0861 11 6 1.1849 -4.8134 -0.2805 12 9 1.6449 -6.0035 0.1638 13 6 0.0697 -4.7687 -1.1026 14 6 -0.4150 -3.5427 -1.5690 15 6 -1.6047 -3.5033 -2.4459 16 6 -2.6884 -2.9240 -1.9897 17 6 -3.9695 -2.8184 -2.7645 18 6 -3.7098 -3.0783 -4.2499 19 9 -4.9283 -3.2173 -4.9230 20 9 -2.9869 -2.0114 -4.7944 21 6 -2.8984 -4.3698 -4.3805 22 6 -1.5007 -4.1295 -3.8060 23 6 0.2252 -2.3618 -1.2128 24 1 -0.4850 0.8400 -0.0004 25 1 2.6961 -3.6910 0.7266 26 1 -0.4268 -5.6853 -1.3849 27 1 -2.6576 -2.4971 -0.9981 28 1 -4.6810 -3.5532 -2.3881 29 1 -4.3858 -1.8186 -2.6400 30 1 -2.8197 -4.6446 -5.4324 31 1 -3.3899 -5.1691 -3.8260 32 1 -0.9471 -3.4645 -4.4687 33 1 -0.9743 -5.0808 -3.7265 34 1 -0.1439 -1.4136 -1.5749 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242236753.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:05 Heat of formation + Delta-G solvation = -136.093566 kcal Electronic energy + Delta-G solvation = -21693.966188 eV Core-core repulsion = 17947.723852 eV Total energy + Delta-G solvation = -3746.242336 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.093 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -48.83667 -47.79489 -46.84928 -38.40410 -36.63072 -33.76396 -31.46324 -30.97014 -29.39138 -27.61628 -25.53113 -23.53609 -22.54089 -21.06538 -20.63367 -18.27679 -17.57964 -17.25938 -16.32240 -15.91903 -15.34517 -15.15324 -14.81863 -14.72772 -14.45628 -14.16086 -13.94695 -13.66008 -13.14358 -13.00744 -12.99387 -12.59342 -12.41616 -12.25094 -12.13421 -11.73519 -11.52973 -11.23214 -11.03315 -10.91097 -10.66675 -10.57153 -10.21557 -10.13155 -9.60011 -9.27373 -8.52919 -7.61050 -7.32503 -6.92809 -4.56285 2.27200 2.64530 2.82559 3.00003 3.01759 3.10427 3.81969 3.83261 4.14371 4.38759 4.46277 4.50344 5.12903 5.20461 5.28562 5.37599 5.48879 5.65509 5.67965 5.71149 5.81045 5.95388 6.14623 6.20989 6.23901 6.54664 6.78628 6.89807 6.92295 7.05579 7.31147 7.40598 7.52560 7.76765 7.86222 8.06291 8.41598 8.68980 8.71772 10.00935 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.014310 B = 0.006025 C = 0.004497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.237318 B = 4645.822196 C = 6224.858038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.077 3.923 3 Si 0.911 3.089 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.455 4.455 8 H 0.082 0.918 9 C 0.128 3.872 10 C -0.261 4.261 11 C 0.115 3.885 12 F -0.168 7.168 13 C -0.263 4.263 14 C -0.029 4.029 15 C -0.052 4.052 16 C -0.164 4.164 17 C -0.117 4.117 18 C 0.285 3.715 19 F -0.207 7.207 20 F -0.194 7.194 21 C -0.155 4.155 22 C -0.079 4.079 23 C -0.149 4.149 24 H 0.285 0.715 25 H 0.104 0.896 26 H 0.100 0.900 27 H 0.125 0.875 28 H 0.099 0.901 29 H 0.092 0.908 30 H 0.086 0.914 31 H 0.094 0.906 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.411 -3.128 -6.033 9.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.142 4.142 3 Si 0.735 3.265 4 H -0.186 1.186 5 H -0.202 1.202 6 H -0.188 1.188 7 C -0.484 4.484 8 H 0.100 0.900 9 C 0.125 3.875 10 C -0.281 4.281 11 C 0.096 3.904 12 F -0.147 7.147 13 C -0.283 4.283 14 C -0.029 4.029 15 C -0.053 4.053 16 C -0.182 4.182 17 C -0.155 4.155 18 C 0.249 3.751 19 F -0.188 7.188 20 F -0.175 7.175 21 C -0.193 4.193 22 C -0.116 4.116 23 C -0.169 4.169 24 H 0.096 0.904 25 H 0.122 0.878 26 H 0.118 0.882 27 H 0.143 0.857 28 H 0.117 0.883 29 H 0.111 0.889 30 H 0.105 0.895 31 H 0.113 0.887 32 H 0.103 0.897 33 H 0.106 0.894 34 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -6.618 -2.975 -6.024 9.430 hybrid contribution 0.344 0.677 0.102 0.766 sum -6.274 -2.298 -5.922 8.928 Atomic orbital electron populations 1.69787 1.07627 1.29814 1.33622 1.25939 0.94797 1.01526 0.91986 0.86304 0.80176 0.79829 0.80166 1.18628 1.20159 1.18847 1.19571 0.98255 0.90916 1.39668 0.90013 1.17319 0.90759 0.91361 0.88083 1.20983 1.05705 0.91673 1.09755 1.17398 0.95420 0.79615 0.97969 1.91338 1.88830 1.46063 1.88484 1.20198 1.01350 0.96803 1.09984 1.18343 0.94286 0.93160 0.97160 1.19677 0.93775 0.97479 0.94322 1.22027 0.92493 1.02538 1.01177 1.21322 0.98935 1.04713 0.90480 1.21066 0.77240 0.86686 0.90128 1.92981 1.46704 1.96213 1.82865 1.93015 1.77983 1.58843 1.87705 1.22555 0.97384 0.95582 1.03733 1.20380 0.94961 1.02079 0.94197 1.21549 0.98785 0.96112 1.00408 0.90441 0.87801 0.88175 0.85725 0.88317 0.88938 0.89523 0.88703 0.89710 0.89369 0.85536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.06 10.97 55.55 0.61 -18.45 16 2 C 0.08 1.83 5.14 -17.34 -0.09 1.74 16 3 Si 0.91 17.84 29.59 -169.99 -5.03 12.81 16 4 H -0.26 -5.12 7.11 56.52 0.40 -4.71 16 5 H -0.28 -5.29 7.11 56.52 0.40 -4.88 16 6 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 7 C -0.46 -11.50 9.05 -37.74 -0.34 -11.84 16 8 H 0.08 1.98 7.91 -52.49 -0.41 1.57 16 9 C 0.13 3.26 5.57 -106.88 -0.60 2.66 16 10 C -0.26 -6.37 9.76 -38.74 -0.38 -6.75 16 11 C 0.11 2.67 7.27 -39.56 -0.29 2.38 16 12 F -0.17 -3.72 17.26 2.25 0.04 -3.68 16 13 C -0.26 -5.74 9.58 -38.84 -0.37 -6.11 16 14 C -0.03 -0.63 5.09 -105.09 -0.54 -1.16 16 15 C -0.05 -0.94 5.22 -102.73 -0.54 -1.48 16 16 C -0.16 -2.75 9.30 -36.34 -0.34 -3.09 16 17 C -0.12 -1.57 5.60 -28.17 -0.16 -1.73 16 18 C 0.28 3.95 2.14 -26.68 -0.06 3.89 16 19 F -0.21 -2.85 17.08 2.25 0.04 -2.81 16 20 F -0.19 -3.15 16.32 2.25 0.04 -3.11 16 21 C -0.15 -1.90 5.57 -26.68 -0.15 -2.04 16 22 C -0.08 -1.17 5.43 -28.17 -0.15 -1.32 16 23 C -0.15 -3.64 8.30 -38.46 -0.32 -3.96 16 24 H 0.28 6.32 8.30 -40.82 -0.34 5.98 16 25 H 0.10 2.42 8.06 -52.48 -0.42 2.00 16 26 H 0.10 1.97 8.06 -52.49 -0.42 1.55 16 27 H 0.12 2.29 7.94 -52.48 -0.42 1.87 16 28 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.09 1.19 8.14 -51.92 -0.42 0.76 16 30 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.09 1.02 8.12 -51.93 -0.42 0.60 16 32 H 0.08 1.29 7.93 -51.93 -0.41 0.87 16 33 H 0.09 1.23 7.98 -51.93 -0.41 0.82 16 34 H 0.13 3.20 6.17 -52.49 -0.32 2.88 16 LS Contribution 300.46 15.07 4.53 4.53 Total: -1.00 -26.01 300.46 -7.74 -33.75 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -3.65 Total: 5.78 kcal Atomic # 6 Polarization: -24.50 SS G_CDS: -4.31 Total: -28.81 kcal Atomic # 7 Polarization: -19.06 SS G_CDS: 0.61 Total: -18.45 kcal Atomic # 9 Polarization: -9.71 SS G_CDS: 0.11 Total: -9.60 kcal Atomic # 14 Polarization: 17.84 SS G_CDS: -5.03 Total: 12.81 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -26.01 -7.74 -33.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242236753.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.344 kcal (2) G-P(sol) polarization free energy of solvation -26.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds