Wall clock time and date at job start Tue Mar 31 2020 06:38:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30866 * 1 3 3 Si 1.86808 * 119.99382 * 2 1 4 4 H 1.48504 * 109.46748 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47170 * 299.99927 * 3 2 1 6 6 H 1.48493 * 109.46916 * 60.00499 * 3 2 1 7 7 C 1.39891 * 120.00285 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99681 * 198.03586 * 7 2 1 9 9 C 1.41376 * 120.00291 * 17.75847 * 7 2 1 10 10 C 1.40801 * 120.57030 * 203.66779 * 9 7 2 11 11 N 1.31509 * 120.71102 * 179.97438 * 10 9 7 12 12 C 1.32156 * 122.07591 * 359.97438 * 11 10 9 13 13 F 1.35107 * 119.45993 * 180.02562 * 12 11 10 14 14 C 1.40116 * 121.07518 * 0.02562 * 12 11 10 15 15 C 1.48279 * 120.42347 * 180.02562 * 14 12 11 16 16 C 1.38945 * 120.16588 * 244.72663 * 15 14 12 17 17 C 1.38558 * 120.52529 * 179.69251 * 16 15 14 18 18 C 1.37749 * 120.52446 * 0.59595 * 17 16 15 19 19 C 1.39697 * 119.91199 * 359.69984 * 18 17 16 20 20 C 1.46515 * 133.94728 * 179.97438 * 19 18 17 21 21 C 1.34243 * 106.95973 * 180.02562 * 20 19 18 22 22 N 1.36808 * 109.88987 * 359.97438 * 21 20 19 23 23 H 0.97000 * 125.05543 * 180.02562 * 22 21 20 24 24 C 1.37517 * 109.90460 * 0.02562 * 22 21 20 25 25 C 1.39053 * 119.15247 * 359.73875 * 14 12 11 26 26 H 0.96999 * 120.00369 * 359.97438 * 1 2 3 27 27 H 1.07996 * 119.65035 * 359.97438 * 10 9 7 28 28 H 1.07995 * 119.73719 * 359.97438 * 16 15 14 29 29 H 1.07995 * 119.73854 * 180.29510 * 17 16 15 30 30 H 1.07999 * 120.04172 * 179.71659 * 18 17 16 31 31 H 1.08003 * 126.51959 * 0.04872 * 20 19 18 32 32 H 1.07996 * 125.05226 * 179.97438 * 21 20 19 33 33 H 1.08002 * 120.93584 * 180.27330 * 25 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2425 1.6179 0.0000 4 1 3.7026 1.3466 -0.0006 5 1 1.8837 2.3965 -1.2125 6 1 1.8838 2.3964 1.2125 7 6 2.0082 -1.2115 -0.0005 8 1 3.0484 -1.2345 0.2890 9 6 1.3519 -2.4065 -0.3745 10 6 1.8297 -3.6547 0.0686 11 7 1.2212 -4.7680 -0.2772 12 6 0.1463 -4.7707 -1.0461 13 9 -0.4373 -5.9459 -1.3683 14 6 -0.3979 -3.5747 -1.5325 15 6 -1.6048 -3.5944 -2.3938 16 6 -1.5285 -3.1638 -3.7126 17 6 -2.6501 -3.1851 -4.5258 18 6 -3.8612 -3.6220 -4.0361 19 6 -3.9621 -4.0537 -2.7114 20 6 -5.0618 -4.5660 -1.8898 21 6 -4.5557 -4.8208 -0.6729 22 7 -3.2227 -4.5139 -0.6496 23 1 -2.6413 -4.6141 0.1204 24 6 -2.8292 -4.0424 -1.8800 25 6 0.2047 -2.3686 -1.1923 26 1 -0.4850 0.8400 0.0004 27 1 2.7054 -3.6983 0.6992 28 1 -0.5865 -2.8140 -4.1082 29 1 -2.5753 -2.8519 -5.5504 30 1 -4.7315 -3.6309 -4.6756 31 1 -6.0849 -4.7113 -2.2038 32 1 -5.1173 -5.2101 0.1634 33 1 -0.1932 -1.4295 -1.5476 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242360882.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:06 Heat of formation + Delta-G solvation = 32.643756 kcal Electronic energy + Delta-G solvation = -21027.055136 eV Core-core repulsion = 17738.818986 eV Total energy + Delta-G solvation = -3288.236150 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -47.59150 -40.78672 -38.36325 -36.42294 -34.25714 -32.74445 -30.53549 -29.85447 -28.63375 -27.81948 -25.58543 -23.19773 -21.99263 -21.20937 -21.09766 -19.92412 -17.91702 -17.09386 -16.63269 -15.96471 -15.84184 -15.20067 -14.87949 -14.66114 -13.98472 -13.81729 -13.70174 -13.27874 -12.82581 -12.47325 -12.34014 -12.23808 -12.03046 -11.83338 -11.51683 -11.33089 -11.21461 -11.17331 -10.84846 -10.68404 -10.11759 -9.55026 -9.32172 -8.52396 -8.39600 -7.82718 -7.76859 -7.14339 -7.08592 -4.68916 1.44097 2.08467 2.26093 2.61028 2.92039 2.95658 2.98583 3.08261 3.57782 3.69925 4.26531 4.34333 5.03619 5.05923 5.18334 5.26181 5.45527 5.52668 5.66891 5.79335 5.92305 6.05151 6.21325 6.30568 6.44653 6.46401 6.67885 6.82460 6.85424 6.93583 7.00951 7.10979 7.16196 7.40612 7.55937 7.60205 7.71145 7.90406 8.15834 8.41630 8.41942 9.16040 9.82654 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.017866 B = 0.005909 C = 0.005216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.888644 B = 4737.001213 C = 5366.312010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.780 5.780 2 C 0.073 3.927 3 Si 0.915 3.085 4 H -0.257 1.257 5 H -0.269 1.269 6 H -0.272 1.272 7 C -0.438 4.438 8 H 0.089 0.911 9 C 0.055 3.945 10 C 0.006 3.994 11 N -0.488 5.488 12 C 0.153 3.847 13 F -0.146 7.146 14 C -0.102 4.102 15 C -0.022 4.022 16 C -0.094 4.094 17 C -0.144 4.144 18 C -0.086 4.086 19 C -0.112 4.112 20 C -0.215 4.215 21 C 0.050 3.950 22 N -0.585 5.585 23 H 0.416 0.584 24 C 0.118 3.882 25 C -0.097 4.097 26 H 0.287 0.713 27 H 0.138 0.862 28 H 0.123 0.877 29 H 0.119 0.881 30 H 0.116 0.884 31 H 0.142 0.858 32 H 0.165 0.835 33 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.632 -1.093 -3.250 7.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.404 5.404 2 C -0.148 4.148 3 Si 0.739 3.261 4 H -0.180 1.180 5 H -0.194 1.194 6 H -0.197 1.197 7 C -0.467 4.467 8 H 0.107 0.893 9 C 0.050 3.950 10 C -0.155 4.155 11 N -0.199 5.199 12 C 0.000 4.000 13 F -0.126 7.126 14 C -0.106 4.106 15 C -0.025 4.025 16 C -0.114 4.114 17 C -0.163 4.163 18 C -0.105 4.105 19 C -0.117 4.117 20 C -0.241 4.241 21 C -0.078 4.078 22 N -0.185 5.185 23 H 0.253 0.747 24 C 0.010 3.990 25 C -0.122 4.122 26 H 0.099 0.901 27 H 0.155 0.845 28 H 0.141 0.859 29 H 0.137 0.863 30 H 0.134 0.866 31 H 0.159 0.841 32 H 0.183 0.817 33 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -6.507 -1.800 -2.833 7.321 hybrid contribution 0.140 1.273 0.161 1.291 sum -6.367 -0.527 -2.672 6.925 Atomic orbital electron populations 1.69783 1.07794 1.30167 1.32638 1.26042 0.94843 1.01970 0.91915 0.86127 0.81002 0.80090 0.78919 1.18010 1.19352 1.19682 1.19616 0.98474 0.90597 1.37978 0.89281 1.18507 0.92212 0.93831 0.90432 1.22287 1.02243 0.86553 1.04448 1.66274 1.07564 1.33954 1.12142 1.17592 0.96189 0.79702 1.06558 1.91414 1.82712 1.46816 1.91647 1.19139 0.96740 0.93384 1.01296 1.17746 0.89791 1.01260 0.93688 1.20875 0.98663 0.99884 0.91944 1.20721 0.92637 1.03470 0.99513 1.20395 0.97327 0.99469 0.93264 1.19118 0.92991 1.05369 0.94206 1.21556 0.98302 1.10983 0.93259 1.21756 0.83776 1.02923 0.99316 1.41786 1.09186 1.55925 1.11636 0.74686 1.18161 0.94397 1.00719 0.85719 1.21760 0.97080 0.95588 0.97773 0.90146 0.84451 0.85880 0.86313 0.86588 0.84068 0.81726 0.84295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.39 10.92 55.54 0.61 -17.78 16 2 C 0.07 1.64 5.17 -17.34 -0.09 1.55 16 3 Si 0.92 16.90 29.60 -169.99 -5.03 11.87 16 4 H -0.26 -4.68 7.11 56.52 0.40 -4.28 16 5 H -0.27 -4.93 7.11 56.52 0.40 -4.53 16 6 H -0.27 -4.98 7.11 56.52 0.40 -4.58 16 7 C -0.44 -10.40 9.07 -37.77 -0.34 -10.75 16 8 H 0.09 1.99 7.91 -52.49 -0.42 1.58 16 9 C 0.05 1.35 5.59 -106.71 -0.60 0.75 16 10 C 0.01 0.15 10.96 -16.72 -0.18 -0.03 16 11 N -0.49 -12.04 10.33 -12.57 -0.13 -12.17 16 12 C 0.15 3.71 8.38 -16.71 -0.14 3.57 16 13 F -0.15 -3.46 16.69 2.25 0.04 -3.42 16 14 C -0.10 -2.36 5.33 -104.76 -0.56 -2.92 16 15 C -0.02 -0.46 5.03 -104.79 -0.53 -0.98 16 16 C -0.09 -1.76 9.71 -39.20 -0.38 -2.14 16 17 C -0.14 -2.31 10.01 -39.64 -0.40 -2.71 16 18 C -0.09 -1.36 10.09 -39.22 -0.40 -1.76 16 19 C -0.11 -1.98 6.37 -105.16 -0.67 -2.65 16 20 C -0.22 -3.19 11.08 -37.66 -0.42 -3.61 16 21 C 0.05 0.71 11.82 -16.74 -0.20 0.51 16 22 N -0.58 -10.23 6.06 -10.48 -0.06 -10.30 16 23 H 0.42 7.22 8.96 -40.82 -0.37 6.85 16 24 C 0.12 2.32 6.80 -83.74 -0.57 1.75 16 25 C -0.10 -2.35 8.51 -38.26 -0.33 -2.68 16 26 H 0.29 6.16 8.30 -40.82 -0.34 5.83 16 27 H 0.14 2.95 8.06 -52.49 -0.42 2.53 16 28 H 0.12 2.17 8.06 -52.49 -0.42 1.75 16 29 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 30 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 31 H 0.14 1.66 8.06 -52.48 -0.42 1.24 16 32 H 0.17 1.65 8.06 -52.49 -0.42 1.23 16 33 H 0.14 3.47 6.18 -52.49 -0.32 3.14 16 LS Contribution 298.54 15.07 4.50 4.50 Total: -1.00 -27.82 298.54 -8.65 -36.47 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: -2.78 Total: 12.93 kcal Atomic # 6 Polarization: -16.30 SS G_CDS: -5.79 Total: -22.09 kcal Atomic # 7 Polarization: -40.67 SS G_CDS: 0.41 Total: -40.25 kcal Atomic # 9 Polarization: -3.46 SS G_CDS: 0.04 Total: -3.42 kcal Atomic # 14 Polarization: 16.90 SS G_CDS: -5.03 Total: 11.87 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -27.82 -8.65 -36.47 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242360882.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.115 kcal (2) G-P(sol) polarization free energy of solvation -27.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds