Wall clock time and date at job start Tue Mar 31 2020 06:38:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30909 * 1 3 3 Si 1.86798 * 119.99749 * 2 1 4 4 H 1.48501 * 109.47343 * 89.99734 * 3 2 1 5 5 H 1.48504 * 109.46920 * 210.00097 * 3 2 1 6 6 H 1.48500 * 109.47353 * 329.99971 * 3 2 1 7 7 C 1.39864 * 120.00069 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00069 * 17.87007 * 7 2 1 9 9 C 1.40863 * 119.99894 * 197.86419 * 7 2 1 10 10 C 1.41000 * 120.11910 * 28.89511 * 9 7 2 11 11 C 1.36092 * 119.91837 * 179.97438 * 10 9 7 12 12 C 1.40236 * 120.16025 * 0.02562 * 11 10 9 13 13 C 1.47589 * 119.87584 * 179.97438 * 12 11 10 14 14 C 1.36204 * 126.78374 * 309.68273 * 13 12 11 15 15 N 1.36205 * 109.68275 * 179.87150 * 14 13 12 16 16 H 0.97001 * 124.78954 * 180.13487 * 15 14 13 17 17 C 1.37652 * 110.41846 * 0.41099 * 15 14 13 18 18 N 1.32674 * 132.93305 * 179.72431 * 17 15 14 19 19 C 1.31621 * 121.69479 * 180.02562 * 18 17 15 20 20 C 1.38593 * 121.54818 * 0.02562 * 19 18 17 21 21 C 1.38324 * 119.34710 * 359.97438 * 20 19 18 22 22 C 1.39422 * 118.05616 * 359.97438 * 21 20 19 23 23 C 1.40001 * 120.23813 * 0.02562 * 12 11 10 24 24 C 1.36429 * 120.08170 * 359.70865 * 23 12 11 25 25 F 1.35101 * 120.08332 * 180.30912 * 24 23 12 26 26 H 0.96999 * 119.99731 * 175.44280 * 1 2 3 27 27 H 1.07995 * 120.03844 * 0.02712 * 10 9 7 28 28 H 1.07994 * 119.91667 * 179.97438 * 11 10 9 29 29 H 1.08004 * 125.15281 * 0.02562 * 14 13 12 30 30 H 1.07998 * 119.22051 * 179.97438 * 19 18 17 31 31 H 1.07999 * 120.32022 * 180.02562 * 20 19 18 32 32 H 1.07999 * 120.97181 * 180.02562 * 21 20 19 33 33 H 1.08006 * 119.95962 * 180.02562 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 2.4905 2.0465 1.4001 5 1 3.5406 1.4402 -0.7001 6 1 1.4405 2.6527 -0.7000 7 6 2.0084 -1.2113 0.0005 8 1 1.5075 -2.1241 -0.2861 9 6 3.3661 -1.2404 0.3748 10 6 3.8692 -0.2903 1.2870 11 6 5.1815 -0.3226 1.6461 12 6 6.0347 -1.2983 1.1107 13 6 7.4569 -1.3271 1.5041 14 6 8.3264 -0.2788 1.4973 15 7 9.5494 -0.6944 1.9293 16 1 10.3302 -0.1248 2.0120 17 6 9.5227 -2.0383 2.2261 18 7 10.4441 -2.8848 2.6674 19 6 10.1712 -4.1547 2.8803 20 6 8.9058 -4.6724 2.6533 21 6 7.9042 -3.8370 2.1928 22 6 8.2170 -2.4958 1.9758 23 6 5.5424 -2.2442 0.2036 24 6 4.2274 -2.2243 -0.1591 25 9 3.7510 -3.1410 -1.0296 26 1 -0.4850 -0.8374 -0.0667 27 1 3.2137 0.4617 1.7009 28 1 5.5668 0.4055 2.3445 29 1 8.0823 0.7296 1.1973 30 1 10.9520 -4.8087 3.2394 31 1 8.7037 -5.7176 2.8350 32 1 6.9087 -4.2126 2.0075 33 1 6.2035 -2.9940 -0.2057 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242859988.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:35 Heat of formation + Delta-G solvation = 33.307804 kcal Electronic energy + Delta-G solvation = -20494.549952 eV Core-core repulsion = 17206.342597 eV Total energy + Delta-G solvation = -3288.207355 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -47.45717 -41.27056 -37.95225 -37.36893 -34.15930 -32.79508 -31.04254 -29.68130 -29.56741 -28.42484 -24.86542 -23.52072 -22.49266 -21.80179 -21.05967 -19.34601 -18.39055 -18.11632 -16.47261 -16.04623 -15.65861 -15.12805 -14.85822 -14.68978 -14.49266 -14.31499 -14.07121 -13.16266 -13.10625 -13.04192 -12.76467 -12.36418 -12.23260 -12.06990 -11.80290 -11.14151 -11.01848 -10.82415 -10.40908 -10.08611 -9.99139 -9.61955 -9.33544 -9.11829 -8.33439 -8.18513 -7.79199 -7.57477 -7.20184 -4.67500 1.15157 1.50289 2.18168 2.46633 2.94008 3.00059 3.12289 3.27093 3.44547 3.88362 4.05077 4.33563 4.62260 4.95157 4.98391 5.11992 5.17695 5.35182 5.53788 5.65873 5.80674 5.84277 5.88738 6.04085 6.17152 6.41727 6.49674 6.59666 6.67607 6.79503 7.08668 7.17393 7.30235 7.35858 7.44322 7.53816 7.59920 7.73356 8.13656 8.17715 8.32283 8.52940 9.80538 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.027741 B = 0.004690 C = 0.004190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.090051 B = 5968.188149 C = 6680.439246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.041 3.959 3 Si 1.075 2.925 4 H -0.273 1.273 5 H -0.260 1.260 6 H -0.287 1.287 7 C -0.493 4.493 8 H 0.082 0.918 9 C 0.075 3.925 10 C -0.234 4.234 11 C -0.056 4.056 12 C -0.147 4.147 13 C -0.069 4.069 14 C 0.037 3.963 15 N -0.579 5.579 16 H 0.415 0.585 17 C 0.279 3.721 18 N -0.507 5.507 19 C 0.129 3.871 20 C -0.212 4.212 21 C -0.020 4.020 22 C -0.141 4.141 23 C -0.086 4.086 24 C -0.020 4.020 25 F -0.160 7.160 26 H 0.289 0.711 27 H 0.114 0.886 28 H 0.102 0.898 29 H 0.177 0.823 30 H 0.155 0.845 31 H 0.133 0.867 32 H 0.134 0.866 33 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.017 -1.244 3.932 14.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.180 4.180 3 Si 0.901 3.099 4 H -0.200 1.200 5 H -0.184 1.184 6 H -0.215 1.215 7 C -0.520 4.520 8 H 0.100 0.900 9 C 0.071 3.929 10 C -0.253 4.253 11 C -0.075 4.075 12 C -0.149 4.149 13 C -0.076 4.076 14 C -0.088 4.088 15 N -0.185 5.185 16 H 0.252 0.748 17 C 0.046 3.954 18 N -0.220 5.220 19 C -0.036 4.036 20 C -0.234 4.234 21 C -0.046 4.046 22 C -0.148 4.148 23 C -0.105 4.105 24 C -0.040 4.040 25 F -0.139 7.139 26 H 0.101 0.899 27 H 0.132 0.868 28 H 0.120 0.880 29 H 0.195 0.805 30 H 0.173 0.827 31 H 0.151 0.849 32 H 0.152 0.848 33 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 14.555 0.802 4.068 15.134 hybrid contribution -0.536 -2.105 -0.270 2.188 sum 14.019 -1.302 3.798 14.582 Atomic orbital electron populations 1.70559 1.08054 1.33405 1.30202 1.27441 0.95643 1.04652 0.90251 0.83565 0.75703 0.72634 0.78045 1.19970 1.18406 1.21458 1.20626 0.95001 0.97280 1.39124 0.89978 1.17805 0.93211 0.90969 0.90880 1.20624 0.95947 1.04630 1.04060 1.20440 0.93122 0.96359 0.97574 1.17066 0.89847 1.01841 1.06187 1.18925 0.93167 0.90398 1.05084 1.22019 0.82897 0.99873 1.03989 1.41267 1.12163 1.06406 1.58675 0.74782 1.18381 0.91018 0.85824 1.00217 1.66438 1.35158 1.03812 1.16614 1.22310 0.95760 0.89543 0.96002 1.21812 0.94506 1.00990 1.06067 1.21033 0.99485 0.91142 0.92959 1.19913 0.94352 0.94802 1.05739 1.20320 0.93357 0.98706 0.98152 1.17353 0.92174 0.95864 0.98579 1.91306 1.89261 1.65242 1.68126 0.89900 0.86800 0.88013 0.80546 0.82744 0.84913 0.84810 0.87755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.74 13.66 55.54 0.76 -19.98 16 2 C 0.04 1.04 5.41 -17.34 -0.09 0.95 16 3 Si 1.08 22.94 24.90 -169.99 -4.23 18.70 16 4 H -0.27 -5.41 6.42 56.52 0.36 -5.05 16 5 H -0.26 -5.47 7.04 56.52 0.40 -5.07 16 6 H -0.29 -5.97 7.11 56.52 0.40 -5.57 16 7 C -0.49 -13.02 9.10 -37.98 -0.35 -13.37 16 8 H 0.08 2.29 7.94 -52.49 -0.42 1.87 16 9 C 0.08 1.87 5.14 -106.72 -0.55 1.33 16 10 C -0.23 -5.26 7.20 -39.31 -0.28 -5.54 16 11 C -0.06 -1.13 9.64 -39.60 -0.38 -1.51 16 12 C -0.15 -2.90 5.81 -104.67 -0.61 -3.51 16 13 C -0.07 -1.18 5.74 -103.19 -0.59 -1.77 16 14 C 0.04 0.52 11.73 -16.34 -0.19 0.32 16 15 N -0.58 -7.50 6.01 -11.85 -0.07 -7.57 16 16 H 0.42 4.00 8.96 -40.82 -0.37 3.63 16 17 C 0.28 4.34 8.41 -155.53 -1.31 3.03 16 18 N -0.51 -7.52 10.39 -12.27 -0.13 -7.65 16 19 C 0.13 1.61 11.15 -17.51 -0.20 1.41 16 20 C -0.21 -2.62 10.10 -39.42 -0.40 -3.02 16 21 C -0.02 -0.30 10.22 -39.11 -0.40 -0.70 16 22 C -0.14 -2.35 6.34 -104.94 -0.67 -3.01 16 23 C -0.09 -1.82 9.66 -39.57 -0.38 -2.20 16 24 C -0.02 -0.47 7.25 -39.10 -0.28 -0.76 16 25 F -0.16 -3.92 16.74 2.25 0.04 -3.88 16 26 H 0.29 7.31 8.73 -40.82 -0.36 6.95 16 27 H 0.11 2.51 4.40 -52.49 -0.23 2.27 16 28 H 0.10 1.73 8.06 -52.49 -0.42 1.31 16 29 H 0.18 1.93 8.06 -52.48 -0.42 1.51 16 30 H 0.16 1.35 8.06 -52.49 -0.42 0.93 16 31 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 32 H 0.13 1.97 8.06 -52.49 -0.42 1.54 16 33 H 0.10 2.04 8.06 -52.48 -0.42 1.62 16 LS Contribution 293.54 15.07 4.42 4.42 Total: -1.00 -28.89 293.54 -8.63 -37.52 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -2.74 Total: 6.77 kcal Atomic # 6 Polarization: -21.66 SS G_CDS: -6.68 Total: -28.34 kcal Atomic # 7 Polarization: -35.76 SS G_CDS: 0.56 Total: -35.20 kcal Atomic # 9 Polarization: -3.92 SS G_CDS: 0.04 Total: -3.88 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -4.23 Total: 18.70 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -28.89 -8.63 -37.52 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242859988.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.833 kcal (2) G-P(sol) polarization free energy of solvation -28.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds