Wall clock time and date at job start Tue Mar 31 2020 06:38:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30871 * 1 3 3 Si 1.86798 * 120.00300 * 2 1 4 4 H 1.48497 * 109.47337 * 270.00030 * 3 2 1 5 5 H 1.48500 * 109.46914 * 30.00085 * 3 2 1 6 6 H 1.48497 * 109.47390 * 149.99742 * 3 2 1 7 7 C 1.39931 * 120.00236 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00365 * 197.38431 * 7 2 1 9 9 C 1.40733 * 120.00086 * 17.37456 * 7 2 1 10 10 C 1.40915 * 120.58676 * 24.72717 * 9 7 2 11 11 C 1.36200 * 119.97636 * 180.25380 * 10 9 7 12 12 C 1.39153 * 121.30236 * 359.44534 * 11 10 9 13 13 F 1.35095 * 119.38253 * 180.31079 * 12 11 10 14 14 C 1.38090 * 121.22933 * 0.56625 * 12 11 10 15 15 C 1.39438 * 119.90585 * 359.72538 * 14 12 11 16 16 C 1.47466 * 120.61709 * 179.97438 * 15 14 12 17 17 C 1.36264 * 126.78698 * 64.70614 * 16 15 14 18 18 N 1.36204 * 109.67829 * 179.89318 * 17 16 15 19 19 H 0.96992 * 124.78743 * 180.15901 * 18 17 16 20 20 C 1.37666 * 110.42155 * 0.38570 * 18 17 16 21 21 N 1.32673 * 132.91610 * 179.75529 * 20 18 17 22 22 C 1.31614 * 121.69390 * 180.02562 * 21 20 18 23 23 C 1.38599 * 121.54484 * 359.95414 * 22 21 20 24 24 C 1.38330 * 119.34553 * 0.02562 * 23 22 21 25 25 C 1.39410 * 118.05703 * 359.97438 * 24 23 22 26 26 H 0.96997 * 119.99947 * 0.02562 * 1 2 3 27 27 H 1.07992 * 120.01402 * 359.97438 * 10 9 7 28 28 H 1.08004 * 119.35115 * 179.72478 * 11 10 9 29 29 H 1.08002 * 120.04393 * 179.70312 * 14 12 11 30 30 H 1.08005 * 125.15958 * 0.02562 * 17 16 15 31 31 H 1.07994 * 119.23226 * 179.97438 * 22 21 20 32 32 H 1.08000 * 120.32473 * 180.02562 * 23 22 21 33 33 H 1.08001 * 120.96965 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.4903 2.0464 -1.4000 5 1 1.4403 2.6526 0.7001 6 1 3.5403 1.4401 0.7001 7 6 2.0084 -1.2118 -0.0005 8 1 3.0514 -1.2333 0.2789 9 6 1.3530 -2.4027 -0.3650 10 6 0.2178 -2.3699 -1.1992 11 6 -0.4100 -3.5296 -1.5400 12 6 0.0531 -4.7619 -1.0892 13 9 -0.5958 -5.8885 -1.4562 14 6 1.1606 -4.8542 -0.2694 15 6 1.8387 -3.6984 0.1157 16 6 3.0228 -3.7787 0.9911 17 6 4.2174 -4.3641 0.6961 18 7 5.0653 -4.2344 1.7541 19 1 5.9749 -4.5703 1.7787 20 6 4.4475 -3.5636 2.7854 21 7 4.8485 -3.2045 3.9980 22 6 4.0564 -2.5545 4.8240 23 6 2.7618 -2.2112 4.4677 24 6 2.2885 -2.5590 3.2153 25 6 3.1460 -3.2470 2.3581 26 1 -0.4850 0.8400 -0.0004 27 1 -0.1570 -1.4253 -1.5646 28 1 -1.2819 -3.4923 -2.1763 29 1 1.5006 -5.8204 0.0732 30 1 4.4564 -4.8545 -0.2360 31 1 4.4238 -2.2821 5.8023 32 1 2.1288 -1.6773 5.1610 33 1 1.2840 -2.3050 2.9105 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242860110.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:10 Heat of formation + Delta-G solvation = 37.511269 kcal Electronic energy + Delta-G solvation = -20992.119137 eV Core-core repulsion = 17704.094059 eV Total energy + Delta-G solvation = -3288.025079 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -47.44275 -40.91092 -37.50108 -36.91824 -33.75836 -32.58665 -30.64469 -29.50391 -29.14174 -27.70986 -25.05243 -23.17176 -22.03926 -21.94550 -20.91475 -18.82227 -17.81175 -17.40568 -16.15049 -15.87252 -15.45091 -15.24657 -14.68052 -14.32312 -14.20682 -14.17396 -14.05037 -12.91076 -12.74403 -12.42453 -12.25239 -12.11452 -12.01804 -11.76183 -11.65252 -11.29342 -11.10248 -10.84651 -10.38210 -10.12419 -9.67837 -9.59498 -9.31404 -8.93689 -7.97252 -7.80219 -7.43631 -7.15521 -6.89506 -4.47549 1.53630 1.86619 2.46003 2.71318 2.97541 3.01664 3.06917 3.24701 3.35219 3.78632 4.38071 4.43701 4.94154 5.26937 5.33853 5.44531 5.49939 5.72288 5.82150 5.93486 6.05004 6.13602 6.20286 6.41126 6.52090 6.81992 6.84936 6.92857 7.02769 7.07357 7.17462 7.35747 7.45047 7.68086 7.76801 7.80708 7.89460 8.06741 8.41793 8.46135 8.64293 8.76680 9.92995 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.011262 B = 0.008723 C = 0.005695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2485.576308 B = 3209.115208 C = 4915.811937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.778 5.778 2 C 0.076 3.924 3 Si 0.906 3.094 4 H -0.265 1.265 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.426 4.426 8 H 0.083 0.917 9 C 0.126 3.874 10 C -0.152 4.152 11 C -0.117 4.117 12 C -0.059 4.059 13 F -0.177 7.177 14 C -0.092 4.092 15 C -0.144 4.144 16 C -0.047 4.047 17 C 0.028 3.972 18 N -0.582 5.582 19 H 0.412 0.588 20 C 0.275 3.725 21 N -0.512 5.512 22 C 0.126 3.874 23 C -0.218 4.218 24 C -0.001 4.001 25 C -0.125 4.125 26 H 0.285 0.715 27 H 0.127 0.873 28 H 0.097 0.903 29 H 0.100 0.900 30 H 0.173 0.827 31 H 0.151 0.849 32 H 0.129 0.871 33 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.192 -1.462 3.705 6.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.402 5.402 2 C -0.144 4.144 3 Si 0.730 3.270 4 H -0.190 1.190 5 H -0.200 1.200 6 H -0.184 1.184 7 C -0.454 4.454 8 H 0.101 0.899 9 C 0.123 3.877 10 C -0.171 4.171 11 C -0.136 4.136 12 C -0.079 4.079 13 F -0.157 7.157 14 C -0.111 4.111 15 C -0.146 4.146 16 C -0.054 4.054 17 C -0.096 4.096 18 N -0.189 5.189 19 H 0.248 0.752 20 C 0.042 3.958 21 N -0.226 5.226 22 C -0.039 4.039 23 C -0.240 4.240 24 C -0.028 4.028 25 C -0.133 4.133 26 H 0.096 0.904 27 H 0.144 0.856 28 H 0.115 0.885 29 H 0.119 0.881 30 H 0.190 0.810 31 H 0.169 0.831 32 H 0.147 0.853 33 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 5.930 -1.629 3.871 7.267 hybrid contribution -0.247 0.700 -0.284 0.795 sum 5.683 -0.929 3.587 6.784 Atomic orbital electron populations 1.69824 1.07611 1.29855 1.32899 1.25988 0.94745 1.01577 0.92105 0.86309 0.80756 0.80315 0.79615 1.19003 1.20006 1.18396 1.19488 0.98182 0.90605 1.37123 0.89919 1.18613 0.90417 0.90623 0.88074 1.20857 0.98875 0.96535 1.00849 1.20376 0.99956 0.91941 1.01350 1.17022 0.98927 0.81456 1.10481 1.91274 1.81666 1.51124 1.91591 1.20485 0.95104 0.97153 0.98354 1.18622 0.98777 0.92386 1.04812 1.18707 0.93563 1.01229 0.91898 1.22004 0.89970 1.05706 0.91940 1.41195 1.14788 1.51052 1.11835 0.75161 1.18395 0.90520 0.97856 0.89050 1.66395 1.38085 1.15941 1.02174 1.22214 0.90297 0.94139 0.97278 1.21783 0.97847 1.06345 0.98062 1.21065 0.99528 0.91000 0.91170 1.19842 0.94190 1.03315 0.95907 0.90371 0.85559 0.88507 0.88143 0.81018 0.83140 0.85270 0.84525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.25 10.96 55.55 0.61 -17.64 16 2 C 0.08 1.74 5.15 -17.33 -0.09 1.65 16 3 Si 0.91 17.65 29.59 -169.99 -5.03 12.62 16 4 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 5 H -0.28 -5.23 7.11 56.52 0.40 -4.83 16 6 H -0.26 -5.19 7.11 56.52 0.40 -4.78 16 7 C -0.43 -10.27 8.43 -38.01 -0.32 -10.59 16 8 H 0.08 2.03 7.37 -52.49 -0.39 1.65 16 9 C 0.13 3.06 5.73 -104.62 -0.60 2.46 16 10 C -0.15 -3.67 8.64 -39.30 -0.34 -4.01 16 11 C -0.12 -2.69 9.88 -39.97 -0.40 -3.09 16 12 C -0.06 -1.36 7.27 -39.30 -0.29 -1.65 16 13 F -0.18 -3.97 17.24 2.25 0.04 -3.93 16 14 C -0.09 -2.03 9.76 -39.19 -0.38 -2.41 16 15 C -0.14 -3.24 5.98 -102.37 -0.61 -3.86 16 16 C -0.05 -0.95 4.73 -103.21 -0.49 -1.44 16 17 C 0.03 0.47 11.82 -16.32 -0.19 0.28 16 18 N -0.58 -9.15 6.01 -11.83 -0.07 -9.22 16 19 H 0.41 5.00 8.96 -40.82 -0.37 4.64 16 20 C 0.27 5.10 8.41 -155.52 -1.31 3.79 16 21 N -0.51 -9.06 10.39 -12.27 -0.13 -9.19 16 22 C 0.13 1.95 11.15 -17.51 -0.20 1.75 16 23 C -0.22 -3.48 10.10 -39.41 -0.40 -3.88 16 24 C 0.00 -0.03 10.22 -39.11 -0.40 -0.43 16 25 C -0.13 -2.53 6.18 -104.93 -0.65 -3.18 16 26 H 0.29 6.10 8.30 -40.82 -0.34 5.76 16 27 H 0.13 3.10 6.18 -52.49 -0.32 2.77 16 28 H 0.10 2.03 8.06 -52.48 -0.42 1.61 16 29 H 0.10 2.03 8.06 -52.49 -0.42 1.61 16 30 H 0.17 2.35 8.06 -52.48 -0.42 1.93 16 31 H 0.15 1.74 8.06 -52.49 -0.42 1.32 16 32 H 0.13 1.67 8.06 -52.49 -0.42 1.24 16 33 H 0.14 2.75 8.06 -52.49 -0.42 2.32 16 LS Contribution 298.11 15.07 4.49 4.49 Total: -1.00 -27.44 298.11 -9.49 -36.93 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: -2.75 Total: 10.52 kcal Atomic # 6 Polarization: -17.92 SS G_CDS: -6.66 Total: -24.58 kcal Atomic # 7 Polarization: -36.46 SS G_CDS: 0.41 Total: -36.05 kcal Atomic # 9 Polarization: -3.97 SS G_CDS: 0.04 Total: -3.93 kcal Atomic # 14 Polarization: 17.65 SS G_CDS: -5.03 Total: 12.62 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -27.44 -9.49 -36.93 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242860110.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.440 kcal (2) G-P(sol) polarization free energy of solvation -27.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds