Wall clock time and date at job start Tue Mar 31 2020 06:38:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30903 * 1 3 3 Si 1.86791 * 120.00064 * 2 1 4 4 H 1.48503 * 109.47016 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.47213 * 299.99400 * 3 2 1 6 6 H 1.48503 * 109.47460 * 59.99366 * 3 2 1 7 7 C 1.39864 * 119.99641 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99667 * 198.04175 * 7 2 1 9 9 C 1.40912 * 119.99921 * 18.04302 * 7 2 1 10 10 C 1.41036 * 120.08544 * 204.75558 * 9 7 2 11 11 C 1.36115 * 119.94185 * 180.02562 * 10 9 7 12 12 C 1.40143 * 120.12644 * 359.97438 * 11 10 9 13 13 C 1.47547 * 119.91839 * 180.02562 * 12 11 10 14 14 C 1.36258 * 126.77701 * 64.68558 * 13 12 11 15 15 N 1.36217 * 109.67071 * 179.89421 * 14 13 12 16 16 H 0.96997 * 124.79063 * 180.16141 * 15 14 13 17 17 C 1.37663 * 110.41728 * 0.38998 * 15 14 13 18 18 N 1.32672 * 132.92348 * 179.80704 * 17 15 14 19 19 C 1.31620 * 121.69879 * 179.97438 * 18 17 15 20 20 C 1.38587 * 121.54849 * 359.97438 * 19 18 17 21 21 C 1.38335 * 119.34426 * 0.02562 * 20 19 18 22 22 C 1.39426 * 118.05476 * 359.96614 * 21 20 19 23 23 C 1.40378 * 120.17128 * 0.02562 * 12 11 10 24 24 F 1.35102 * 119.97332 * 180.26785 * 23 12 11 25 25 C 1.36327 * 120.05539 * 359.97438 * 23 12 11 26 26 H 0.97002 * 119.99666 * 0.02562 * 1 2 3 27 27 H 1.07997 * 120.03026 * 0.04958 * 10 9 7 28 28 H 1.08002 * 119.93628 * 180.02562 * 11 10 9 29 29 H 1.08003 * 125.16989 * 0.04530 * 14 13 12 30 30 H 1.07998 * 119.22963 * 179.97438 * 19 18 17 31 31 H 1.07999 * 120.33199 * 180.02562 * 20 19 18 32 32 H 1.07999 * 120.97416 * 180.02562 * 21 20 19 33 33 H 1.07999 * 120.05889 * 179.97438 * 25 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 3.7030 1.3462 0.0006 5 1 1.8844 2.3963 -1.2126 6 1 1.8842 2.3965 1.2124 7 6 2.0083 -1.2113 0.0005 8 1 3.0485 -1.2342 0.2902 9 6 1.3556 -2.4017 -0.3769 10 6 1.8271 -3.6457 0.0915 11 6 1.1948 -4.7938 -0.2753 12 6 0.0756 -4.7423 -1.1172 13 6 -0.6067 -5.9897 -1.5116 14 6 -1.2675 -6.8529 -0.6901 15 7 -1.7675 -7.8886 -1.4200 16 1 -2.2782 -8.6277 -1.0543 17 6 -1.4412 -7.7409 -2.7492 18 7 -1.6905 -8.4727 -3.8274 19 6 -1.2627 -8.1155 -5.0198 20 6 -0.5296 -6.9548 -5.2094 21 6 -0.2388 -6.1513 -4.1215 22 6 -0.7028 -6.5505 -2.8688 23 6 -0.3980 -3.5069 -1.5864 24 9 -1.4805 -3.4615 -2.3935 25 6 0.2298 -2.3525 -1.2235 26 1 -0.4850 0.8401 -0.0004 27 1 2.6890 -3.6872 0.7410 28 1 1.5557 -5.7463 0.0838 29 1 -1.3801 -6.7328 0.3774 30 1 -1.4883 -8.7415 -5.8704 31 1 -0.1886 -6.6802 -6.1967 32 1 0.3303 -5.2409 -4.2392 33 1 -0.1342 -1.4021 -1.5848 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242860309.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:38 Heat of formation + Delta-G solvation = 36.211185 kcal Electronic energy + Delta-G solvation = -20599.903372 eV Core-core repulsion = 17311.821918 eV Total energy + Delta-G solvation = -3288.081455 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -47.59442 -41.08746 -37.69002 -37.18026 -34.02187 -32.61720 -30.70267 -29.43678 -29.12879 -28.21689 -25.27538 -23.37642 -22.21002 -21.76250 -20.89213 -19.08234 -17.98171 -17.67925 -16.30860 -15.84204 -15.70539 -14.95501 -14.73849 -14.56340 -14.39583 -14.22542 -14.07979 -13.03762 -12.95061 -12.66342 -12.61199 -12.10800 -11.97072 -11.80835 -11.70076 -11.19570 -11.09893 -10.79268 -10.53100 -10.07094 -9.93057 -9.71505 -9.30468 -9.12939 -8.17283 -7.80961 -7.51655 -7.19444 -6.92928 -4.55788 1.31730 1.65780 2.43910 2.87277 2.94656 2.99114 3.04075 3.07543 3.21283 3.79043 4.20459 4.38342 4.76011 5.10763 5.15535 5.30497 5.42280 5.52280 5.68369 5.71249 5.96086 6.08180 6.21485 6.24788 6.57849 6.66196 6.75538 6.84482 6.88693 6.98762 7.09186 7.29674 7.49894 7.56949 7.67724 7.77017 7.85111 8.10726 8.27296 8.42176 8.66320 8.73509 9.96044 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.031734 B = 0.004267 C = 0.004083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.113284 B = 6560.353540 C = 6855.778784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.778 5.778 2 C 0.074 3.926 3 Si 0.911 3.089 4 H -0.258 1.258 5 H -0.270 1.270 6 H -0.272 1.272 7 C -0.448 4.448 8 H 0.085 0.915 9 C 0.134 3.866 10 C -0.235 4.235 11 C -0.044 4.044 12 C -0.205 4.205 13 C -0.064 4.064 14 C 0.039 3.961 15 N -0.581 5.581 16 H 0.414 0.586 17 C 0.277 3.723 18 N -0.508 5.508 19 C 0.127 3.873 20 C -0.213 4.213 21 C -0.015 4.015 22 C -0.136 4.136 23 C 0.134 3.866 24 F -0.163 7.163 25 C -0.210 4.210 26 H 0.285 0.715 27 H 0.099 0.901 28 H 0.097 0.903 29 H 0.176 0.824 30 H 0.154 0.846 31 H 0.132 0.868 32 H 0.132 0.868 33 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.018 -8.348 -3.685 9.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.401 5.401 2 C -0.146 4.146 3 Si 0.735 3.265 4 H -0.181 1.181 5 H -0.195 1.195 6 H -0.198 1.198 7 C -0.476 4.476 8 H 0.103 0.897 9 C 0.131 3.869 10 C -0.255 4.255 11 C -0.063 4.063 12 C -0.208 4.208 13 C -0.071 4.071 14 C -0.085 4.085 15 N -0.187 5.187 16 H 0.251 0.749 17 C 0.044 3.956 18 N -0.221 5.221 19 C -0.038 4.038 20 C -0.235 4.235 21 C -0.042 4.042 22 C -0.144 4.144 23 C 0.114 3.886 24 F -0.142 7.142 25 C -0.231 4.231 26 H 0.096 0.904 27 H 0.117 0.883 28 H 0.115 0.885 29 H 0.193 0.807 30 H 0.172 0.828 31 H 0.150 0.850 32 H 0.150 0.850 33 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -1.823 -9.015 -3.435 9.818 hybrid contribution 0.277 1.220 0.009 1.251 sum -1.547 -7.795 -3.427 8.654 Atomic orbital electron populations 1.69866 1.07767 1.29798 1.32676 1.26033 0.94784 1.01804 0.91997 0.86202 0.81035 0.80448 0.78807 1.18123 1.19463 1.19763 1.19637 0.98493 0.91163 1.38284 0.89670 1.17424 0.89773 0.92380 0.87320 1.20691 1.04624 0.92610 1.07561 1.20179 0.93607 0.96917 0.95573 1.17279 1.03050 0.88245 1.12217 1.18863 1.02640 0.96014 0.89567 1.22090 1.00310 0.88891 0.97250 1.41260 1.49527 1.23680 1.04206 0.74923 1.18371 0.98201 0.93229 0.85766 1.66417 1.24435 1.33542 0.97733 1.22270 0.94214 0.94796 0.92562 1.21787 1.04539 0.97668 0.99512 1.20999 0.94724 0.98086 0.90351 1.19970 1.02888 0.96563 0.94935 1.17410 0.84812 0.94102 0.92259 1.91345 1.53630 1.97492 1.71723 1.20918 1.01624 0.96100 1.04418 0.90405 0.88280 0.88495 0.80655 0.82845 0.85012 0.84993 0.85441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.20 10.97 55.54 0.61 -18.59 16 2 C 0.07 1.75 5.12 -17.34 -0.09 1.66 16 3 Si 0.91 17.51 29.59 -169.99 -5.03 12.48 16 4 H -0.26 -4.88 7.11 56.52 0.40 -4.48 16 5 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 6 H -0.27 -5.16 7.11 56.52 0.40 -4.75 16 7 C -0.45 -11.09 9.02 -37.96 -0.34 -11.43 16 8 H 0.09 2.00 7.91 -52.49 -0.41 1.59 16 9 C 0.13 3.37 5.57 -106.80 -0.60 2.78 16 10 C -0.24 -5.36 9.73 -39.28 -0.38 -5.74 16 11 C -0.04 -0.94 9.71 -39.63 -0.38 -1.32 16 12 C -0.21 -4.50 5.81 -104.58 -0.61 -5.11 16 13 C -0.06 -1.24 5.33 -103.19 -0.55 -1.79 16 14 C 0.04 0.63 11.82 -16.32 -0.19 0.44 16 15 N -0.58 -8.58 6.01 -11.83 -0.07 -8.65 16 16 H 0.41 4.64 8.96 -40.82 -0.37 4.27 16 17 C 0.28 4.83 8.41 -155.52 -1.31 3.52 16 18 N -0.51 -8.31 10.39 -12.27 -0.13 -8.44 16 19 C 0.13 1.77 11.15 -17.51 -0.20 1.57 16 20 C -0.21 -2.99 10.10 -39.42 -0.40 -3.39 16 21 C -0.02 -0.26 10.22 -39.10 -0.40 -0.66 16 22 C -0.14 -2.58 6.37 -104.94 -0.67 -3.24 16 23 C 0.13 3.22 7.23 -39.47 -0.29 2.93 16 24 F -0.16 -3.91 16.81 2.25 0.04 -3.88 16 25 C -0.21 -5.36 8.59 -39.25 -0.34 -5.70 16 26 H 0.28 6.36 8.30 -40.82 -0.34 6.02 16 27 H 0.10 2.08 8.06 -52.49 -0.42 1.66 16 28 H 0.10 1.79 8.06 -52.49 -0.42 1.37 16 29 H 0.18 2.30 8.06 -52.48 -0.42 1.88 16 30 H 0.15 1.54 8.06 -52.49 -0.42 1.11 16 31 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 32 H 0.13 2.25 8.06 -52.49 -0.42 1.83 16 33 H 0.13 3.39 6.16 -52.49 -0.32 3.07 16 LS Contribution 298.93 15.07 4.50 4.50 Total: -1.00 -28.65 298.93 -9.59 -38.24 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -2.78 Total: 9.82 kcal Atomic # 6 Polarization: -18.76 SS G_CDS: -6.74 Total: -25.49 kcal Atomic # 7 Polarization: -36.09 SS G_CDS: 0.41 Total: -35.68 kcal Atomic # 9 Polarization: -3.91 SS G_CDS: 0.04 Total: -3.88 kcal Atomic # 14 Polarization: 17.51 SS G_CDS: -5.03 Total: 12.48 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -28.65 -9.59 -38.24 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242860309.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.454 kcal (2) G-P(sol) polarization free energy of solvation -28.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds