Wall clock time and date at job start Tue Mar 31 2020 06:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30838 * 1 3 3 Si 1.86797 * 119.99794 * 2 1 4 4 H 1.48504 * 109.47445 * 0.02562 * 3 2 1 5 5 H 1.48499 * 109.47014 * 119.99771 * 3 2 1 6 6 H 1.48492 * 109.47340 * 240.00280 * 3 2 1 7 7 C 1.39979 * 120.00276 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00116 * 206.59304 * 7 2 1 9 9 C 1.40901 * 119.99652 * 26.59054 * 7 2 1 10 10 C 1.40967 * 120.13158 * 25.38221 * 9 7 2 11 11 C 1.36150 * 119.90630 * 179.97438 * 10 9 7 12 12 C 1.40113 * 120.18088 * 0.02562 * 11 10 9 13 13 C 1.47806 * 119.86957 * 180.02562 * 12 11 10 14 14 C 1.39399 * 120.23744 * 309.72098 * 13 12 11 15 15 C 1.38352 * 120.28184 * 179.75995 * 14 13 12 16 16 C 1.37852 * 120.70238 * 0.50405 * 15 14 13 17 17 C 1.39837 * 120.08574 * 359.75864 * 16 15 14 18 18 N 1.35820 * 133.49407 * 180.02562 * 17 16 15 19 19 C 1.30116 * 109.57622 * 179.97438 * 18 17 16 20 20 N 1.36042 * 110.03949 * 359.97438 * 19 18 17 21 21 H 0.96996 * 126.32725 * 179.97438 * 20 19 18 22 22 C 1.37732 * 107.34771 * 0.02562 * 20 19 18 23 23 C 1.39883 * 120.25404 * 359.97438 * 12 11 10 24 24 C 1.36506 * 120.09261 * 359.71987 * 23 12 11 25 25 F 1.35098 * 120.08998 * 180.27427 * 24 23 12 26 26 H 0.97000 * 119.99798 * 185.88838 * 1 2 3 27 27 H 1.08001 * 120.04922 * 0.02562 * 10 9 7 28 28 H 1.08010 * 119.90872 * 180.02562 * 11 10 9 29 29 H 1.07994 * 119.85532 * 359.97438 * 14 13 12 30 30 H 1.07998 * 119.64933 * 180.25612 * 15 14 13 31 31 H 1.07997 * 119.95974 * 179.77770 * 16 15 14 32 32 H 1.07999 * 124.97904 * 179.97438 * 19 18 17 33 33 H 1.08000 * 119.94786 * 180.02562 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 1.2773 2.7465 0.0006 5 1 3.0960 1.6964 1.2125 6 1 3.0960 1.6965 -1.2124 7 6 2.0083 -1.2122 -0.0005 8 1 3.0026 -1.2618 0.4181 9 6 1.4156 -2.3677 -0.5473 10 6 0.4170 -2.2508 -1.5354 11 6 -0.1523 -3.3703 -2.0609 12 6 0.2513 -4.6382 -1.6219 13 6 -0.3710 -5.8490 -2.1976 14 6 -1.7589 -5.9620 -2.2621 15 6 -2.3423 -7.0928 -2.8053 16 6 -1.5645 -8.1271 -3.2803 17 6 -0.1701 -8.0397 -3.2216 18 7 0.8354 -8.8711 -3.5991 19 6 1.9822 -8.3201 -3.3266 20 7 1.7895 -7.0997 -2.7572 21 1 2.4816 -6.4879 -2.4614 22 6 0.4300 -6.8939 -2.6772 23 6 1.2415 -4.7625 -0.6418 24 6 1.8240 -3.6474 -0.1120 25 9 2.7843 -3.7676 0.8306 26 1 -0.4850 -0.8356 0.0862 27 1 0.1045 -1.2746 -1.8757 28 1 -0.9171 -3.2808 -2.8183 29 1 -2.3813 -5.1619 -1.8898 30 1 -3.4186 -7.1678 -2.8540 31 1 -2.0326 -9.0058 -3.6986 32 1 2.9458 -8.7663 -3.5235 33 1 1.5491 -5.7423 -0.3073 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243931703.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:13 Heat of formation + Delta-G solvation = 25.640434 kcal Electronic energy + Delta-G solvation = -20624.310547 eV Core-core repulsion = 17335.770711 eV Total energy + Delta-G solvation = -3288.539837 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -47.51934 -41.81006 -38.10347 -36.67773 -34.49525 -32.78394 -30.66066 -29.64330 -28.96825 -28.53702 -25.32146 -22.94832 -22.16944 -21.61257 -21.21391 -20.12116 -18.30222 -17.71374 -16.86657 -15.87112 -15.33213 -15.11973 -14.96783 -14.83297 -14.34012 -14.19649 -13.90269 -13.41274 -13.32960 -12.87732 -12.61372 -12.08982 -11.81466 -11.52950 -11.44083 -11.30192 -11.01646 -10.90836 -10.56716 -10.39354 -10.18989 -9.94851 -9.67254 -9.28728 -8.25260 -8.11172 -7.91554 -7.56745 -7.34815 -4.72826 1.16050 1.82181 2.34431 2.47916 2.98810 3.02022 3.14183 3.21139 3.23361 3.78828 4.10250 4.28776 4.45318 4.93309 5.03817 5.29645 5.40377 5.55353 5.66957 5.69235 5.76261 5.85933 6.02166 6.06153 6.39248 6.54307 6.67380 6.68903 6.79449 6.91288 7.04954 7.10728 7.28685 7.40855 7.49763 7.53490 7.60927 7.71473 7.90902 8.05308 8.34373 8.47131 9.68119 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.028202 B = 0.004486 C = 0.004091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.591430 B = 6239.958940 C = 6843.279251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.771 5.771 2 C 0.038 3.962 3 Si 1.067 2.933 4 H -0.270 1.270 5 H -0.272 1.272 6 H -0.271 1.271 7 C -0.489 4.489 8 H 0.085 0.915 9 C 0.075 3.925 10 C -0.209 4.209 11 C -0.056 4.056 12 C -0.199 4.199 13 C 0.023 3.977 14 C -0.119 4.119 15 C -0.118 4.118 16 C -0.095 4.095 17 C 0.045 3.955 18 N -0.505 5.505 19 C 0.249 3.751 20 N -0.593 5.593 21 H 0.425 0.575 22 C 0.050 3.950 23 C -0.092 4.092 24 C -0.033 4.033 25 F -0.162 7.162 26 H 0.303 0.697 27 H 0.115 0.885 28 H 0.100 0.900 29 H 0.127 0.873 30 H 0.124 0.876 31 H 0.121 0.879 32 H 0.212 0.788 33 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.402 -6.868 -4.270 8.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.392 5.392 2 C -0.187 4.187 3 Si 0.890 3.110 4 H -0.194 1.194 5 H -0.197 1.197 6 H -0.196 1.196 7 C -0.515 4.515 8 H 0.103 0.897 9 C 0.071 3.929 10 C -0.228 4.228 11 C -0.075 4.075 12 C -0.201 4.201 13 C 0.020 3.980 14 C -0.139 4.139 15 C -0.138 4.138 16 C -0.115 4.115 17 C -0.073 4.073 18 N -0.226 5.226 19 C -0.038 4.038 20 N -0.204 5.204 21 H 0.264 0.736 22 C -0.060 4.060 23 C -0.111 4.111 24 C -0.053 4.053 25 F -0.141 7.141 26 H 0.117 0.883 27 H 0.133 0.867 28 H 0.118 0.882 29 H 0.145 0.855 30 H 0.142 0.858 31 H 0.139 0.861 32 H 0.228 0.772 33 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -0.006 -6.045 -4.669 7.639 hybrid contribution 0.928 -0.763 0.771 1.427 sum 0.922 -6.809 -3.899 7.900 Atomic orbital electron populations 1.70475 1.08238 1.34742 1.25742 1.27247 0.95567 1.04683 0.91195 0.83590 0.75760 0.73268 0.78431 1.19432 1.19728 1.19613 1.20667 1.03773 0.94130 1.32976 0.89675 1.17736 0.92302 0.91221 0.91668 1.20664 1.03645 0.97723 1.00797 1.20449 0.97646 0.91546 0.97842 1.17668 1.05176 0.91212 1.06037 1.17832 0.91616 0.91378 0.97178 1.21046 0.92835 0.98399 1.01630 1.20762 0.99329 0.93689 0.99997 1.20113 0.89555 0.99425 1.02429 1.18991 0.93967 0.91433 1.02933 1.70428 0.97313 1.30577 1.24239 1.25248 0.99253 0.83412 0.95872 1.43133 1.06802 1.18288 1.52158 0.73622 1.19001 0.83591 0.98425 1.04996 1.20228 0.97249 0.95903 0.97736 1.17268 0.97214 0.94230 0.96599 1.91292 1.62341 1.96795 1.63696 0.88302 0.86746 0.88180 0.85496 0.85835 0.86094 0.77209 0.88432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.83 12.31 55.55 0.68 -18.15 16 2 C 0.04 0.89 4.90 -17.32 -0.08 0.80 16 3 Si 1.07 19.87 30.01 -169.99 -5.10 14.77 16 4 H -0.27 -4.97 7.11 56.52 0.40 -4.57 16 5 H -0.27 -4.85 7.11 56.52 0.40 -4.45 16 6 H -0.27 -4.87 7.11 56.52 0.40 -4.47 16 7 C -0.49 -12.26 8.68 -37.92 -0.33 -12.59 16 8 H 0.09 2.13 7.80 -52.49 -0.41 1.72 16 9 C 0.07 1.86 5.30 -106.73 -0.57 1.29 16 10 C -0.21 -4.86 7.91 -39.30 -0.31 -5.17 16 11 C -0.06 -1.18 9.44 -39.63 -0.37 -1.56 16 12 C -0.20 -4.07 5.50 -104.67 -0.58 -4.64 16 13 C 0.02 0.42 5.47 -104.85 -0.57 -0.16 16 14 C -0.12 -1.95 9.50 -39.11 -0.37 -2.32 16 15 C -0.12 -1.68 9.99 -39.68 -0.40 -2.08 16 16 C -0.10 -1.46 10.09 -39.12 -0.39 -1.86 16 17 C 0.04 0.77 7.22 -84.72 -0.61 0.16 16 18 N -0.50 -8.19 11.28 -12.06 -0.14 -8.33 16 19 C 0.25 3.25 12.97 -89.77 -1.16 2.08 16 20 N -0.59 -8.70 6.10 -11.56 -0.07 -8.77 16 21 H 0.42 5.65 8.53 -40.82 -0.35 5.30 16 22 C 0.05 0.87 6.78 -83.72 -0.57 0.31 16 23 C -0.09 -1.96 8.89 -39.59 -0.35 -2.31 16 24 C -0.03 -0.79 7.26 -39.08 -0.28 -1.08 16 25 F -0.16 -3.90 16.70 2.25 0.04 -3.86 16 26 H 0.30 7.59 6.79 -40.82 -0.28 7.31 16 27 H 0.11 2.71 6.52 -52.49 -0.34 2.37 16 28 H 0.10 1.89 8.04 -52.48 -0.42 1.47 16 29 H 0.13 1.94 8.04 -52.49 -0.42 1.52 16 30 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 31 H 0.12 1.60 8.06 -52.49 -0.42 1.17 16 32 H 0.21 1.62 8.06 -52.49 -0.42 1.20 16 33 H 0.10 1.93 8.03 -52.49 -0.42 1.51 16 LS Contribution 295.54 15.07 4.45 4.45 Total: -1.00 -28.17 295.54 -9.79 -37.96 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -2.71 Total: 11.04 kcal Atomic # 6 Polarization: -22.16 SS G_CDS: -6.96 Total: -29.12 kcal Atomic # 7 Polarization: -35.72 SS G_CDS: 0.48 Total: -35.25 kcal Atomic # 9 Polarization: -3.90 SS G_CDS: 0.04 Total: -3.86 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.10 Total: 14.77 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -28.17 -9.79 -37.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243931703.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.602 kcal (2) G-P(sol) polarization free energy of solvation -28.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds