Wall clock time and date at job start Tue Mar 31 2020 06:43:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30849 * 1 3 3 Si 1.86800 * 120.00204 * 2 1 4 4 H 1.48498 * 109.46969 * 274.68793 * 3 2 1 5 5 H 1.48497 * 109.47134 * 34.69036 * 3 2 1 6 6 H 1.48501 * 109.47035 * 154.69003 * 3 2 1 7 7 C 1.39933 * 119.99856 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00201 * 197.80228 * 7 2 1 9 9 C 1.41325 * 119.99566 * 17.81001 * 7 2 1 10 10 C 1.40780 * 120.20762 * 24.62187 * 9 7 2 11 11 C 1.37629 * 120.02665 * 180.02562 * 10 9 7 12 12 C 1.38492 * 120.45999 * 359.97438 * 11 10 9 13 13 C 1.39597 * 120.41468 * 0.27937 * 12 11 10 14 14 C 1.48294 * 120.02090 * 179.72435 * 13 12 11 15 15 C 1.39037 * 120.20673 * 64.99789 * 14 13 12 16 16 C 1.38506 * 120.31232 * 179.97438 * 15 14 13 17 17 C 1.37720 * 120.66590 * 359.97438 * 16 15 14 18 18 C 1.39812 * 120.02844 * 0.02562 * 17 16 15 19 19 N 1.35814 * 133.51422 * 179.97438 * 18 17 16 20 20 C 1.30112 * 109.60702 * 180.02562 * 19 18 17 21 21 N 1.36029 * 110.06169 * 0.02562 * 20 19 18 22 22 H 0.96996 * 126.33676 * 180.02562 * 21 20 19 23 23 C 1.37896 * 107.31846 * 359.76436 * 21 20 19 24 24 C 1.39151 * 119.95638 * 359.44016 * 13 12 11 25 25 F 1.35102 * 120.22693 * 180.27643 * 24 13 12 26 26 H 0.96996 * 119.99647 * 0.02562 * 1 2 3 27 27 H 1.08004 * 119.99298 * 0.04125 * 10 9 7 28 28 H 1.08000 * 119.76803 * 179.97438 * 11 10 9 29 29 H 1.07992 * 119.79648 * 179.97438 * 12 11 10 30 30 H 1.08004 * 119.85014 * 359.95090 * 15 14 13 31 31 H 1.07993 * 119.66794 * 179.97438 * 16 15 14 32 32 H 1.08004 * 119.98958 * 180.02562 * 17 16 15 33 33 H 1.08003 * 124.96965 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 2.3909 2.1035 -1.3954 5 1 1.4931 2.6220 0.7968 6 1 3.5861 1.4135 0.5986 7 6 2.0081 -1.2119 0.0005 8 1 3.0493 -1.2342 0.2865 9 6 1.3522 -2.4065 -0.3733 10 6 0.2229 -2.3617 -1.2126 11 6 -0.4134 -3.5274 -1.5739 12 6 0.0495 -4.7504 -1.1177 13 6 1.1645 -4.8163 -0.2803 14 6 1.6490 -6.1300 0.2080 15 6 2.1537 -7.0663 -0.6874 16 6 2.6073 -8.2938 -0.2336 17 6 2.5665 -8.6058 1.1071 18 6 2.0631 -7.6800 2.0260 19 7 1.8973 -7.6957 3.3738 20 6 1.3770 -6.5683 3.7629 21 7 1.1736 -5.7542 2.6923 22 1 0.7980 -4.8602 2.7132 23 6 1.6056 -6.4331 1.5724 24 6 1.8245 -3.6489 0.0910 25 9 2.9075 -3.7068 0.8967 26 1 -0.4849 0.8400 -0.0004 27 1 -0.1443 -1.4123 -1.5735 28 1 -1.2797 -3.4882 -2.2177 29 1 -0.4582 -5.6584 -1.4076 30 1 2.1920 -6.8356 -1.7418 31 1 2.9969 -9.0135 -0.9383 32 1 2.9235 -9.5661 1.4491 33 1 1.1412 -6.3158 4.7861 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243932427.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:02 Heat of formation + Delta-G solvation = 33.707923 kcal Electronic energy + Delta-G solvation = -20990.652580 eV Core-core repulsion = 17702.462575 eV Total energy + Delta-G solvation = -3288.190004 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -47.37510 -41.72052 -37.78021 -36.60862 -34.10896 -32.82332 -30.76486 -29.74359 -29.01355 -27.76707 -25.47438 -23.15554 -22.02945 -21.66350 -20.80880 -20.11025 -17.90806 -17.23254 -16.47150 -16.13375 -15.46496 -15.39064 -14.89069 -14.54519 -14.25284 -14.15836 -13.84846 -13.33952 -13.03577 -12.94767 -12.03118 -11.83113 -11.75771 -11.63164 -11.45364 -11.20272 -11.16572 -10.84549 -10.59472 -10.33261 -10.10569 -9.83808 -9.56521 -9.39308 -8.10436 -7.94519 -7.62686 -7.30999 -6.98881 -4.58635 1.22678 1.86848 2.49404 2.51965 2.96255 3.01234 3.02541 3.13689 3.32612 3.78193 4.18301 4.35953 4.51245 4.96122 5.26054 5.30809 5.42996 5.59105 5.68610 5.76025 5.82992 6.03945 6.12508 6.33714 6.44657 6.66330 6.74429 6.80661 6.83962 6.95008 6.99495 7.16672 7.33721 7.43357 7.64105 7.75180 7.80280 7.90767 8.11530 8.35211 8.56388 8.64705 9.94599 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.024002 B = 0.005207 C = 0.004793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.292047 B = 5376.411683 C = 5840.890369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.077 3.923 3 Si 0.913 3.087 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.260 1.260 7 C -0.453 4.453 8 H 0.083 0.917 9 C 0.086 3.914 10 C -0.141 4.141 11 C -0.111 4.111 12 C -0.199 4.199 13 C -0.070 4.070 14 C -0.006 4.006 15 C -0.101 4.101 16 C -0.126 4.126 17 C -0.081 4.081 18 C 0.041 3.959 19 N -0.505 5.505 20 C 0.254 3.746 21 N -0.589 5.589 22 H 0.428 0.572 23 C 0.068 3.932 24 C -0.017 4.017 25 F -0.158 7.158 26 H 0.284 0.716 27 H 0.127 0.873 28 H 0.098 0.902 29 H 0.099 0.901 30 H 0.129 0.871 31 H 0.126 0.874 32 H 0.123 0.877 33 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.088 -6.798 1.247 6.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.142 4.142 3 Si 0.737 3.263 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.184 1.184 7 C -0.482 4.482 8 H 0.101 0.899 9 C 0.082 3.918 10 C -0.161 4.161 11 C -0.129 4.129 12 C -0.218 4.218 13 C -0.071 4.071 14 C -0.009 4.009 15 C -0.121 4.121 16 C -0.146 4.146 17 C -0.101 4.101 18 C -0.077 4.077 19 N -0.226 5.226 20 C -0.033 4.033 21 N -0.198 5.198 22 H 0.267 0.733 23 C -0.043 4.043 24 C -0.038 4.038 25 F -0.137 7.137 26 H 0.095 0.905 27 H 0.144 0.856 28 H 0.116 0.884 29 H 0.118 0.882 30 H 0.147 0.853 31 H 0.144 0.856 32 H 0.141 0.859 33 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 0.162 -7.364 1.820 7.587 hybrid contribution 0.023 2.003 -0.234 2.017 sum 0.185 -5.361 1.585 5.593 Atomic orbital electron populations 1.69803 1.07638 1.29726 1.34123 1.25917 0.94777 1.01549 0.91938 0.86207 0.80675 0.80050 0.79409 1.19054 1.20063 1.18366 1.19539 0.98449 0.90888 1.39316 0.89866 1.17562 0.92672 0.90625 0.90906 1.21269 0.97967 0.97448 0.99392 1.20679 0.99187 0.92804 1.00263 1.20261 0.99431 0.96820 1.05328 1.18282 0.97923 0.89364 1.01575 1.17848 0.99828 0.94580 0.88632 1.20973 0.99136 0.92825 0.99140 1.20760 1.01995 0.97027 0.94819 1.20145 1.00391 0.98140 0.91391 1.18992 1.04394 0.93848 0.90500 1.70420 1.20507 1.21326 1.10353 1.25248 0.97681 0.86469 0.93906 1.43162 1.52661 1.17925 1.06102 0.73302 1.18867 1.02798 0.93810 0.88851 1.17864 0.90658 0.93690 1.01544 1.91292 1.53422 1.97209 1.71820 0.90486 0.85565 0.88422 0.88249 0.85324 0.85610 0.85874 0.77108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -18.98 10.96 55.55 0.61 -18.38 16 2 C 0.08 1.83 5.14 -17.34 -0.09 1.74 16 3 Si 0.91 17.87 29.60 -169.99 -5.03 12.84 16 4 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 5 H -0.28 -5.25 7.11 56.52 0.40 -4.85 16 6 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 7 C -0.45 -11.61 8.78 -37.77 -0.33 -11.94 16 8 H 0.08 2.14 7.73 -52.49 -0.41 1.74 16 9 C 0.09 2.17 5.57 -106.80 -0.60 1.58 16 10 C -0.14 -3.39 8.69 -38.84 -0.34 -3.73 16 11 C -0.11 -2.37 10.01 -39.71 -0.40 -2.77 16 12 C -0.20 -4.13 9.73 -38.98 -0.38 -4.51 16 13 C -0.07 -1.52 5.32 -104.92 -0.56 -2.08 16 14 C -0.01 -0.12 5.00 -104.87 -0.52 -0.65 16 15 C -0.10 -1.71 9.72 -39.19 -0.38 -2.09 16 16 C -0.13 -1.84 10.00 -39.67 -0.40 -2.24 16 17 C -0.08 -1.28 10.09 -39.18 -0.40 -1.67 16 18 C 0.04 0.74 7.22 -84.72 -0.61 0.13 16 19 N -0.51 -8.69 11.28 -12.06 -0.14 -8.83 16 20 C 0.25 3.67 12.97 -89.79 -1.16 2.50 16 21 N -0.59 -9.80 6.22 -11.59 -0.07 -9.88 16 22 H 0.43 6.85 8.96 -40.82 -0.37 6.48 16 23 C 0.07 1.28 6.82 -83.74 -0.57 0.71 16 24 C -0.02 -0.42 7.24 -38.28 -0.28 -0.69 16 25 F -0.16 -3.90 16.11 2.25 0.04 -3.86 16 26 H 0.28 6.19 8.30 -40.82 -0.34 5.85 16 27 H 0.13 3.10 6.16 -52.48 -0.32 2.78 16 28 H 0.10 1.83 8.06 -52.49 -0.42 1.40 16 29 H 0.10 1.86 8.06 -52.49 -0.42 1.43 16 30 H 0.13 1.98 8.06 -52.48 -0.42 1.56 16 31 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 32 H 0.12 1.65 8.06 -52.48 -0.42 1.22 16 33 H 0.21 1.92 8.06 -52.48 -0.42 1.49 16 LS Contribution 297.28 15.07 4.48 4.48 Total: -1.00 -28.80 297.28 -9.89 -38.69 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: -2.77 Total: 10.65 kcal Atomic # 6 Polarization: -18.70 SS G_CDS: -7.01 Total: -25.71 kcal Atomic # 7 Polarization: -37.48 SS G_CDS: 0.40 Total: -37.08 kcal Atomic # 9 Polarization: -3.90 SS G_CDS: 0.04 Total: -3.86 kcal Atomic # 14 Polarization: 17.87 SS G_CDS: -5.03 Total: 12.84 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -28.80 -9.89 -38.69 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243932427.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.395 kcal (2) G-P(sol) polarization free energy of solvation -28.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds