Wall clock time and date at job start Tue Mar 31 2020 06:43:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.39521 * 120.14907 * 238.10419 * 3 2 1 5 5 C 1.38936 * 119.79747 * 179.97438 * 4 3 2 6 6 C 1.48374 * 119.95154 * 179.97438 * 5 4 3 7 7 C 1.39596 * 120.01781 * 310.00302 * 6 5 4 8 8 C 1.38467 * 120.41870 * 179.97438 * 7 6 5 9 9 C 1.37659 * 120.45539 * 0.02562 * 8 7 6 10 10 C 1.40752 * 120.01812 * 359.97438 * 9 8 7 11 11 C 1.41322 * 120.20904 * 179.97438 * 10 9 8 12 12 H 1.08002 * 119.99932 * 154.32376 * 11 10 9 13 13 C 1.39929 * 119.99614 * 334.60419 * 11 10 9 14 14 N 1.30844 * 120.00104 * 342.99601 * 13 11 10 15 15 Si 1.86799 * 119.99577 * 162.99853 * 13 11 10 16 16 H 1.48495 * 109.47643 * 59.99903 * 15 13 11 17 17 H 1.48505 * 109.47229 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.47388 * 299.99515 * 15 13 11 19 19 C 1.39075 * 120.01670 * 130.28031 * 6 5 4 20 20 F 1.35103 * 120.22141 * 0.02562 * 19 6 5 21 21 C 1.39638 * 120.09719 * 0.25990 * 5 4 3 22 22 C 1.37780 * 120.30185 * 359.48391 * 21 5 4 23 23 C 1.38972 * 120.20056 * 0.51371 * 22 21 5 24 24 N 1.38969 * 120.05226 * 179.76505 * 23 22 21 25 25 H 1.08001 * 120.10119 * 359.95810 * 4 3 2 26 26 H 1.07997 * 119.79245 * 359.97438 * 7 6 5 27 27 H 1.08004 * 119.77272 * 179.97438 * 8 7 6 28 28 H 1.08002 * 119.99300 * 180.02562 * 9 8 7 29 29 H 0.97005 * 119.99612 * 179.97438 * 14 13 11 30 30 H 1.07997 * 119.85258 * 179.72021 * 21 5 4 31 31 H 1.08001 * 119.89928 * 180.25921 * 22 21 5 32 32 H 0.96996 * 120.00090 * 179.97438 * 24 23 22 33 33 H 0.97004 * 119.99846 * 359.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2685 0.6384 1.0243 5 6 4.6578 0.6341 1.0173 6 6 5.4062 1.3118 2.1046 7 6 5.0875 2.6238 2.4592 8 6 5.7801 3.2640 3.4730 9 6 6.7922 2.6156 4.1440 10 6 7.1291 1.2925 3.8019 11 6 8.1677 0.6232 4.4878 12 1 8.1695 -0.4553 4.5454 13 6 9.1907 1.3581 5.0973 14 7 9.3832 2.6095 4.7674 15 14 10.2815 0.5524 6.3820 16 1 10.9843 -0.6077 5.7776 17 1 11.2800 1.5367 6.8713 18 1 9.4469 0.0879 7.5192 19 6 6.4293 0.6422 2.7672 20 9 6.7462 -0.6256 2.4241 21 6 5.3509 -0.0020 -0.0146 22 6 4.6633 -0.6376 -1.0253 23 6 3.2736 -0.6410 -1.0307 24 7 2.5832 -1.2788 -2.0543 25 1 2.7323 1.1342 1.8200 26 1 4.2957 3.1428 1.9396 27 1 5.5251 4.2793 3.7385 28 1 7.3272 3.1219 4.9338 29 1 10.0921 3.1190 5.1902 30 1 6.4309 0.0009 -0.0185 31 1 5.2060 -1.1311 -1.8180 32 1 1.6133 -1.2811 -2.0572 33 1 3.0714 -1.7218 -2.7660 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244113921.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:18 Heat of formation + Delta-G solvation = 16.220258 kcal Electronic energy + Delta-G solvation = -20241.601415 eV Core-core repulsion = 16952.653089 eV Total energy + Delta-G solvation = -3288.948326 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -47.28825 -39.57669 -37.39589 -36.24626 -34.90297 -33.61365 -31.16856 -30.55411 -29.57702 -27.13005 -25.39926 -23.68842 -22.58299 -20.78570 -20.72056 -18.50503 -17.11738 -17.05961 -16.75813 -16.04206 -15.30836 -14.73696 -14.49890 -14.34384 -14.02618 -13.94969 -13.84579 -13.31156 -12.97340 -12.89086 -12.68083 -12.53920 -11.95241 -11.87434 -11.61191 -11.35574 -11.18926 -11.05732 -10.71950 -10.62800 -10.39640 -9.88033 -9.62003 -9.29019 -8.81505 -7.94008 -7.49360 -7.03553 -6.86855 -4.48142 1.05599 1.55886 2.62257 2.64615 2.72700 3.02304 3.04988 3.10576 3.19432 3.66705 3.86147 4.03943 4.10602 4.48571 4.92739 5.24486 5.36734 5.48311 5.57862 5.69280 5.81530 6.07007 6.19228 6.23585 6.39189 6.51769 6.73079 6.79897 6.90738 7.06689 7.12062 7.27912 7.44203 7.46357 7.53309 7.62813 7.85332 7.90634 8.01421 8.45451 8.67169 8.75652 10.06127 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.029853 B = 0.004088 C = 0.003825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.698046 B = 6848.132129 C = 7318.551898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C 0.270 3.730 3 C -0.123 4.123 4 C -0.015 4.015 5 C -0.072 4.072 6 C -0.060 4.060 7 C -0.202 4.202 8 C -0.112 4.112 9 C -0.141 4.141 10 C 0.086 3.914 11 C -0.455 4.455 12 H 0.083 0.917 13 C 0.077 3.923 14 N -0.791 5.791 15 Si 0.912 3.088 16 H -0.264 1.264 17 H -0.277 1.277 18 H -0.262 1.262 19 C -0.010 4.010 20 F -0.158 7.158 21 C -0.020 4.020 22 C -0.199 4.199 23 C 0.255 3.745 24 N -0.871 5.871 25 H 0.132 0.868 26 H 0.099 0.901 27 H 0.096 0.904 28 H 0.125 0.875 29 H 0.284 0.716 30 H 0.132 0.868 31 H 0.129 0.871 32 H 0.396 0.604 33 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.681 -3.259 -8.094 9.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.123 5.123 2 C -0.044 4.044 3 C -0.132 4.132 4 C -0.036 4.036 5 C -0.074 4.074 6 C -0.061 4.061 7 C -0.222 4.222 8 C -0.130 4.130 9 C -0.161 4.161 10 C 0.082 3.918 11 C -0.484 4.484 12 H 0.101 0.899 13 C -0.141 4.141 14 N -0.415 5.415 15 Si 0.736 3.264 16 H -0.188 1.188 17 H -0.202 1.202 18 H -0.187 1.187 19 C -0.030 4.030 20 F -0.137 7.137 21 C -0.040 4.040 22 C -0.222 4.222 23 C 0.147 3.853 24 N -0.408 5.408 25 H 0.150 0.850 26 H 0.117 0.883 27 H 0.114 0.886 28 H 0.143 0.857 29 H 0.095 0.905 30 H 0.150 0.850 31 H 0.147 0.853 32 H 0.224 0.776 33 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -6.240 -3.094 -8.046 10.642 hybrid contribution 0.917 -0.605 0.239 1.124 sum -5.323 -3.699 -7.807 10.147 Atomic orbital electron populations 1.81220 1.12009 1.10437 1.08609 1.25656 0.92565 0.92869 0.93279 1.15391 0.83834 1.12996 1.00999 1.21031 0.93274 0.94200 0.95067 1.18569 0.91901 1.00943 0.95983 1.18159 0.96754 0.94645 0.96572 1.20266 1.04510 0.94038 1.03348 1.20664 0.97045 0.98298 0.97016 1.21244 0.97703 0.95509 1.01622 1.17550 0.91935 0.92618 0.89653 1.19475 1.05285 0.95110 1.28549 0.89938 1.25887 0.97578 0.94650 0.96011 1.69797 1.27689 1.09137 1.34912 0.86295 0.79314 0.79848 0.80949 1.18833 1.20224 1.18679 1.17834 1.02792 0.81135 1.01267 1.91275 1.92756 1.37842 1.91784 1.21322 1.00524 0.91243 0.90864 1.20426 0.90874 1.08136 1.02715 1.17587 0.91334 0.89733 0.86690 1.42392 1.09110 1.62005 1.27327 0.84995 0.88284 0.88573 0.85707 0.90540 0.84994 0.85331 0.77561 0.76907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -6.88 18.54 41.84 0.78 -6.10 16 2 C 0.27 3.82 14.07 -22.47 -0.32 3.50 16 3 C -0.12 -1.69 5.75 -106.67 -0.61 -2.31 16 4 C -0.01 -0.23 9.19 -38.85 -0.36 -0.58 16 5 C -0.07 -1.24 5.31 -104.94 -0.56 -1.80 16 6 C -0.06 -1.25 5.47 -104.91 -0.57 -1.83 16 7 C -0.20 -4.08 9.49 -38.99 -0.37 -4.45 16 8 C -0.11 -2.38 10.01 -39.71 -0.40 -2.78 16 9 C -0.14 -3.40 8.68 -38.84 -0.34 -3.74 16 10 C 0.09 2.18 5.57 -106.80 -0.59 1.58 16 11 C -0.46 -11.69 8.77 -37.78 -0.33 -12.03 16 12 H 0.08 2.10 7.75 -52.49 -0.41 1.69 16 13 C 0.08 1.85 5.15 -17.34 -0.09 1.76 16 14 N -0.79 -19.33 10.96 55.55 0.61 -18.72 16 15 Si 0.91 17.99 29.59 -169.99 -5.03 12.96 16 16 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 17 H -0.28 -5.29 7.11 56.52 0.40 -4.89 16 18 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 19 C -0.01 -0.24 7.15 -38.29 -0.27 -0.51 16 20 F -0.16 -3.68 15.32 2.25 0.03 -3.64 16 21 C -0.02 -0.31 8.83 -39.23 -0.35 -0.65 16 22 C -0.20 -2.45 9.86 -39.48 -0.39 -2.84 16 23 C 0.26 3.07 6.76 -83.53 -0.56 2.51 16 24 N -0.87 -7.73 8.98 32.58 0.29 -7.44 16 25 H 0.13 1.93 8.03 -52.49 -0.42 1.51 16 26 H 0.10 1.75 8.03 -52.49 -0.42 1.33 16 27 H 0.10 1.80 8.06 -52.48 -0.42 1.37 16 28 H 0.13 3.09 6.19 -52.49 -0.32 2.76 16 29 H 0.28 6.30 8.30 -40.82 -0.34 5.96 16 30 H 0.13 2.07 7.75 -52.49 -0.41 1.67 16 31 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 32 H 0.40 3.45 7.67 -40.82 -0.31 3.14 16 33 H 0.40 2.52 8.83 -40.82 -0.36 2.16 16 LS Contribution 303.43 15.07 4.57 4.57 Total: -1.00 -27.07 303.43 -7.49 -34.56 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -2.63 Total: 7.97 kcal Atomic # 6 Polarization: -18.05 SS G_CDS: -6.11 Total: -24.16 kcal Atomic # 7 Polarization: -33.94 SS G_CDS: 1.68 Total: -32.26 kcal Atomic # 9 Polarization: -3.68 SS G_CDS: 0.03 Total: -3.64 kcal Atomic # 14 Polarization: 17.99 SS G_CDS: -5.03 Total: 12.96 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -27.07 -7.49 -34.56 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244113921.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.781 kcal (2) G-P(sol) polarization free energy of solvation -27.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds