Wall clock time and date at job start Tue Mar 31 2020 06:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43192 * 179.97438 * 2 1 4 4 C 1.39521 * 120.14857 * 101.45220 * 3 2 1 5 5 C 1.38937 * 119.79680 * 179.97438 * 4 3 2 6 6 C 1.48381 * 119.95313 * 179.97438 * 5 4 3 7 7 C 1.39837 * 119.96259 * 0.02562 * 6 5 4 8 8 C 1.38232 * 120.41846 * 179.97438 * 7 6 5 9 9 C 1.38065 * 120.34677 * 359.97438 * 8 7 6 10 10 F 1.35102 * 120.03850 * 180.02562 * 9 8 7 11 11 C 1.41038 * 119.92218 * 0.02562 * 9 8 7 12 12 C 1.41320 * 120.20811 * 180.02562 * 11 9 8 13 13 H 1.08008 * 119.99518 * 24.50840 * 12 11 9 14 14 C 1.39907 * 120.00041 * 204.50683 * 12 11 9 15 15 N 1.30859 * 120.00227 * 17.65921 * 14 12 11 16 16 Si 1.86801 * 119.99999 * 197.66400 * 14 12 11 17 17 H 1.48504 * 109.47317 * 59.99652 * 16 14 12 18 18 H 1.48495 * 109.47427 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47038 * 300.00009 * 16 14 12 20 20 C 1.38673 * 119.96820 * 179.74919 * 6 5 4 21 21 C 1.39650 * 120.09986 * 0.02562 * 5 4 3 22 22 C 1.37768 * 120.30059 * 359.95777 * 21 5 4 23 23 C 1.38984 * 120.20153 * 0.27441 * 22 21 5 24 24 N 1.38949 * 120.04805 * 179.74446 * 23 22 21 25 25 H 1.08001 * 120.09982 * 359.94776 * 4 3 2 26 26 H 1.08000 * 119.78909 * 359.96319 * 7 6 5 27 27 H 1.08000 * 119.82520 * 180.02562 * 8 7 6 28 28 H 0.96997 * 120.00052 * 179.97438 * 15 14 12 29 29 H 1.07998 * 120.17078 * 359.97438 * 20 6 5 30 30 H 1.08000 * 119.85107 * 179.97438 * 21 5 4 31 31 H 1.07997 * 119.90147 * 179.97438 * 22 21 5 32 32 H 0.96997 * 120.00243 * 359.97438 * 24 23 22 33 33 H 0.96998 * 119.99958 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2686 0.2405 -1.1825 5 6 4.6579 0.2400 -1.1740 6 6 5.4065 0.4941 -2.4296 7 6 4.7129 0.7343 -3.6199 8 6 5.4008 0.9727 -4.7949 9 6 6.7814 0.9767 -4.8065 10 9 7.4474 1.2109 -5.9584 11 6 7.4956 0.7361 -3.6144 12 6 8.9088 0.7394 -3.6192 13 1 9.4449 1.2901 -4.3780 14 6 9.6133 0.0293 -2.6410 15 7 9.0099 -0.9003 -1.9453 16 14 11.4155 0.4084 -2.3279 17 1 11.5583 1.8273 -1.9138 18 1 11.9275 -0.4761 -1.2505 19 1 12.1937 0.1748 -3.5710 20 6 6.7932 0.4988 -2.4205 21 6 5.3510 -0.0005 0.0143 22 6 4.6632 -0.2374 1.1843 23 6 3.2734 -0.2446 1.1892 24 7 2.5831 -0.4892 2.3700 25 1 2.7326 0.4256 -2.1016 26 1 3.6329 0.7335 -3.6210 27 1 4.8554 1.1575 -5.7086 28 1 9.4984 -1.3928 -1.2673 29 1 7.3306 0.3182 -1.5013 30 1 6.4310 -0.0004 0.0162 31 1 5.2057 -0.4230 2.0995 32 1 3.0711 -0.6555 3.1916 33 1 1.6131 -0.4944 2.3725 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244114778.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:09 Heat of formation + Delta-G solvation = 2.909277 kcal Electronic energy + Delta-G solvation = -20186.722331 eV Core-core repulsion = 16897.196797 eV Total energy + Delta-G solvation = -3289.525534 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.14272 -40.78831 -39.06532 -37.37361 -36.02588 -35.26589 -32.41051 -31.94967 -31.35899 -28.39514 -27.18912 -24.94376 -23.70706 -22.86685 -21.86361 -19.71138 -18.75353 -18.30028 -17.90385 -17.63553 -16.85747 -16.39177 -15.96368 -15.90431 -15.20846 -15.19621 -15.00348 -14.78517 -14.46472 -14.04546 -13.90136 -13.74469 -13.59609 -13.38149 -13.21374 -12.88437 -12.81252 -12.57768 -12.29360 -12.07782 -11.69334 -11.55813 -11.20016 -11.00685 -9.89349 -9.45870 -9.43440 -8.67832 -8.05961 -6.36498 -0.04112 0.18998 0.97348 1.18180 1.42494 1.51716 1.56712 1.61364 2.05047 2.23943 2.67722 2.83916 2.94904 3.08398 3.67518 3.87784 4.00463 4.13354 4.34080 4.39300 4.52567 4.63141 4.74168 5.00195 5.04784 5.15666 5.23066 5.27299 5.32983 5.63697 5.70506 5.78672 5.84513 6.08473 6.14295 6.26193 6.39236 6.47612 6.61433 6.82923 6.84640 6.93480 8.31030 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.018846 B = 0.004905 C = 0.003937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.370955 B = 5706.723370 C = 7110.294036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C 0.286 3.714 3 C -0.130 4.130 4 C -0.016 4.016 5 C -0.101 4.101 6 C -0.035 4.035 7 C -0.206 4.206 8 C -0.120 4.120 9 C -0.070 4.070 10 F -0.174 7.174 11 C 0.058 3.942 12 C -0.497 4.497 13 H 0.066 0.934 14 C 0.046 3.954 15 N -0.810 5.810 16 Si 0.978 3.022 17 H -0.260 1.260 18 H -0.258 1.258 19 H -0.269 1.269 20 C -0.150 4.150 21 C -0.032 4.032 22 C -0.188 4.188 23 C 0.272 3.728 24 N -0.852 5.852 25 H 0.138 0.862 26 H 0.135 0.865 27 H 0.126 0.874 28 H 0.295 0.705 29 H 0.130 0.870 30 H 0.127 0.873 31 H 0.161 0.839 32 H 0.418 0.582 33 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.544 -0.514 11.162 12.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.147 5.147 2 C -0.027 4.027 3 C -0.139 4.139 4 C -0.037 4.037 5 C -0.103 4.103 6 C -0.036 4.036 7 C -0.225 4.225 8 C -0.139 4.139 9 C -0.091 4.091 10 F -0.154 7.154 11 C 0.055 3.945 12 C -0.526 4.526 13 H 0.084 0.916 14 C -0.170 4.170 15 N -0.435 5.435 16 Si 0.799 3.201 17 H -0.184 1.184 18 H -0.182 1.182 19 H -0.194 1.194 20 C -0.169 4.169 21 C -0.051 4.051 22 C -0.210 4.210 23 C 0.161 3.839 24 N -0.389 5.389 25 H 0.156 0.844 26 H 0.153 0.847 27 H 0.144 0.856 28 H 0.106 0.894 29 H 0.148 0.852 30 H 0.145 0.855 31 H 0.178 0.822 32 H 0.250 0.750 33 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -7.245 -0.708 11.327 13.464 hybrid contribution 1.302 0.086 -0.466 1.386 sum -5.943 -0.622 10.860 12.396 Atomic orbital electron populations 1.81252 1.12643 1.12457 1.08332 1.25605 0.92394 0.91894 0.92833 1.15333 0.83466 1.20276 0.94842 1.21028 0.92742 0.93409 0.96473 1.18503 0.92395 1.06410 0.92985 1.18720 0.92698 0.99500 0.92672 1.20650 0.99101 1.11326 0.91414 1.20732 0.91342 1.02353 0.99497 1.18333 0.90758 1.18273 0.81687 1.91223 1.81977 1.93573 1.48593 1.17913 0.94366 0.91689 0.90563 1.19620 0.91704 1.28676 1.12587 0.91602 1.26568 1.05132 0.92017 0.93321 1.69810 1.40702 1.14883 1.18063 0.85311 0.76122 0.79722 0.78959 1.18411 1.18165 1.19358 1.21318 0.92217 1.05871 0.97532 1.21410 1.00629 0.91769 0.91330 1.20648 0.90907 1.09804 0.99649 1.17643 0.91374 0.89504 0.85410 1.42413 1.09496 1.78789 1.08234 0.84384 0.84746 0.85625 0.89440 0.85212 0.85510 0.82161 0.74985 0.77035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -13.37 18.54 19.00 0.35 -13.02 16 2 C 0.29 7.28 14.07 88.33 1.24 8.53 16 3 C -0.13 -3.17 5.75 -21.19 -0.12 -3.30 16 4 C -0.02 -0.44 9.12 22.75 0.21 -0.24 16 5 C -0.10 -3.34 5.87 -20.07 -0.12 -3.45 16 6 C -0.04 -1.47 5.87 -20.08 -0.12 -1.59 16 7 C -0.21 -8.19 9.43 22.66 0.21 -7.97 16 8 C -0.12 -5.26 9.99 22.23 0.22 -5.03 16 9 C -0.07 -3.61 7.31 22.92 0.17 -3.44 16 10 F -0.17 -9.08 16.70 44.97 0.75 -8.33 16 11 C 0.06 3.07 5.57 -21.28 -0.12 2.95 16 12 C -0.50 -26.73 8.78 23.43 0.21 -26.53 16 13 H 0.07 3.60 7.73 -2.91 -0.02 3.58 16 14 C 0.05 2.22 5.14 85.24 0.44 2.66 16 15 N -0.81 -38.60 10.97 21.82 0.24 -38.36 16 16 Si 0.98 36.47 29.59 68.60 2.03 38.50 16 17 H -0.26 -9.51 7.11 99.48 0.71 -8.81 16 18 H -0.26 -8.74 7.11 99.48 0.71 -8.03 16 19 H -0.27 -10.14 7.11 99.48 0.71 -9.43 16 20 C -0.15 -7.18 8.06 22.93 0.18 -7.00 16 21 C -0.03 -0.93 9.40 22.50 0.21 -0.72 16 22 C -0.19 -4.01 9.86 22.34 0.22 -3.79 16 23 C 0.27 5.56 6.76 38.73 0.26 5.83 16 24 N -0.85 -11.60 8.98 -50.83 -0.46 -12.06 16 25 H 0.14 3.62 6.16 -2.91 -0.02 3.60 16 26 H 0.13 4.35 6.16 -2.91 -0.02 4.33 16 27 H 0.13 4.74 8.06 -2.91 -0.02 4.72 16 28 H 0.29 12.44 8.30 -92.71 -0.77 11.67 16 29 H 0.13 6.13 4.28 -2.91 -0.01 6.12 16 30 H 0.13 4.01 6.16 -2.91 -0.02 3.99 16 31 H 0.16 2.38 8.06 -2.91 -0.02 2.35 16 32 H 0.42 3.34 8.83 -92.71 -0.82 2.52 16 33 H 0.40 5.42 7.67 -92.71 -0.71 4.71 16 Total: -1.00 -60.74 298.48 5.70 -55.03 By element: Atomic # 1 Polarization: 21.63 SS G_CDS: -0.31 Total: 21.32 kcal Atomic # 6 Polarization: -46.19 SS G_CDS: 3.10 Total: -43.09 kcal Atomic # 7 Polarization: -63.57 SS G_CDS: 0.14 Total: -63.43 kcal Atomic # 9 Polarization: -9.08 SS G_CDS: 0.75 Total: -8.33 kcal Atomic # 14 Polarization: 36.47 SS G_CDS: 2.03 Total: 38.50 kcal Total: -60.74 5.70 -55.03 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244114778.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.943 kcal (2) G-P(sol) polarization free energy of solvation -60.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds