Wall clock time and date at job start Tue Mar 31 2020 06:41:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30855 * 1 3 3 Si 1.86793 * 120.00175 * 2 1 4 4 H 1.48504 * 109.47320 * 269.99877 * 3 2 1 5 5 H 1.48502 * 109.47263 * 30.00122 * 3 2 1 6 6 H 1.48500 * 109.47146 * 150.00016 * 3 2 1 7 7 C 1.39935 * 119.99676 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99299 * 197.80517 * 7 2 1 9 9 C 1.41321 * 120.00131 * 17.79864 * 7 2 1 10 10 C 1.40805 * 120.19858 * 24.67526 * 9 7 2 11 11 C 1.37647 * 120.06736 * 179.97438 * 10 9 7 12 12 C 1.38456 * 120.47425 * 359.76387 * 11 10 9 13 13 C 1.39749 * 120.40011 * 0.51396 * 12 11 10 14 14 C 1.47874 * 120.04065 * 179.73925 * 13 12 11 15 15 C 1.35625 * 125.22332 * 319.72813 * 14 13 12 16 16 C 1.46093 * 106.80389 * 180.21906 * 15 14 13 17 17 C 1.39865 * 134.10547 * 180.47209 * 16 15 14 18 18 C 1.38180 * 118.04231 * 179.60961 * 17 16 15 19 19 C 1.38674 * 119.41336 * 359.72607 * 18 17 16 20 20 N 1.31612 * 121.60480 * 359.97438 * 19 18 17 21 21 C 1.32649 * 121.71104 * 0.02562 * 20 19 18 22 22 N 1.37484 * 132.96247 * 179.97438 * 21 20 19 23 23 H 0.97006 * 125.02431 * 0.06725 * 22 21 20 24 24 C 1.39328 * 119.92174 * 359.46516 * 13 12 11 25 25 F 1.35104 * 120.23369 * 180.24709 * 24 13 12 26 26 H 0.97005 * 119.99604 * 0.02562 * 1 2 3 27 27 H 1.08001 * 119.96510 * 359.97438 * 10 9 7 28 28 H 1.08001 * 119.76075 * 180.02562 * 11 10 9 29 29 H 1.08001 * 119.79638 * 180.25624 * 12 11 10 30 30 H 1.07996 * 126.59608 * 359.95385 * 15 14 13 31 31 H 1.07997 * 120.98517 * 359.34351 * 17 16 15 32 32 H 1.07992 * 120.29400 * 179.71179 * 18 17 16 33 33 H 1.07996 * 119.19884 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2426 1.6176 0.0000 4 1 2.4901 2.0464 -1.4001 5 1 1.4401 2.6526 0.7001 6 1 3.5401 1.4400 0.7000 7 6 2.0082 -1.2119 -0.0005 8 1 3.0493 -1.2344 0.2855 9 6 1.3522 -2.4063 -0.3752 10 6 0.2233 -2.3608 -1.2154 11 6 -0.4132 -3.5258 -1.5790 12 6 0.0511 -4.7498 -1.1282 13 6 1.1664 -4.8175 -0.2888 14 6 1.6521 -6.1286 0.1926 15 6 0.8627 -7.1565 0.5922 16 6 1.7540 -8.2443 0.9882 17 6 1.5521 -9.5413 1.4711 18 6 2.6650 -10.3150 1.7398 19 6 3.9292 -9.7894 1.5192 20 7 4.0977 -8.5682 1.0584 21 6 3.0680 -7.7789 0.7823 22 7 2.9746 -6.4937 0.3030 23 1 3.7292 -5.9279 0.0761 24 6 1.8237 -3.6486 0.0892 25 9 2.9055 -3.7071 0.8964 26 1 -0.4850 0.8401 -0.0004 27 1 -0.1436 -1.4108 -1.5749 28 1 -1.2785 -3.4852 -2.2240 29 1 -0.4542 -5.6574 -1.4237 30 1 -0.2169 -7.1672 0.6174 31 1 0.5559 -9.9253 1.6335 32 1 2.5513 -11.3200 2.1183 33 1 4.7966 -10.3970 1.7308 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245401633.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:53 Heat of formation + Delta-G solvation = 32.068380 kcal Electronic energy + Delta-G solvation = -20442.786148 eV Core-core repulsion = 17154.525048 eV Total energy + Delta-G solvation = -3288.261100 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -47.52240 -41.15421 -37.99222 -37.01498 -33.99005 -32.70473 -30.79076 -29.92282 -29.57295 -27.68505 -25.50695 -23.56829 -22.38786 -21.50484 -20.73682 -19.94151 -18.12002 -17.31893 -16.33382 -15.97817 -15.76856 -15.39514 -14.84059 -14.58293 -14.41330 -14.22300 -13.77749 -13.09892 -12.98904 -12.83471 -12.72149 -12.19972 -12.04351 -11.94019 -11.72158 -11.39332 -11.21998 -10.91340 -10.61814 -10.22704 -10.10033 -9.81165 -9.41487 -9.21372 -8.38852 -8.05711 -7.66647 -7.20382 -6.98979 -4.61090 1.11126 1.56738 2.20573 2.48868 2.96339 2.99941 3.01072 3.04344 3.33035 3.77738 4.09165 4.35443 4.70631 4.92639 4.98194 5.18745 5.26276 5.31514 5.55069 5.59369 5.85233 5.95822 6.06237 6.08583 6.35047 6.40326 6.59430 6.67446 6.72221 6.93603 6.96098 7.14522 7.29719 7.37441 7.60112 7.67602 7.73995 7.86242 8.23783 8.30386 8.53125 8.59357 9.93296 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.033188 B = 0.004099 C = 0.003751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.467766 B = 6829.864599 C = 7462.805403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.077 3.923 3 Si 0.915 3.085 4 H -0.265 1.265 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.452 4.452 8 H 0.084 0.916 9 C 0.086 3.914 10 C -0.133 4.133 11 C -0.111 4.111 12 C -0.185 4.185 13 C -0.057 4.057 14 C 0.174 3.826 15 C -0.201 4.201 16 C -0.145 4.145 17 C -0.035 4.035 18 C -0.209 4.209 19 C 0.125 3.875 20 N -0.500 5.500 21 C 0.284 3.716 22 N -0.571 5.571 23 H 0.420 0.580 24 C -0.014 4.014 25 F -0.159 7.159 26 H 0.286 0.714 27 H 0.129 0.871 28 H 0.102 0.898 29 H 0.106 0.894 30 H 0.151 0.849 31 H 0.131 0.869 32 H 0.132 0.868 33 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.616 -10.483 0.138 10.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.143 4.143 3 Si 0.739 3.261 4 H -0.190 1.190 5 H -0.200 1.200 6 H -0.184 1.184 7 C -0.481 4.481 8 H 0.103 0.897 9 C 0.082 3.918 10 C -0.153 4.153 11 C -0.129 4.129 12 C -0.205 4.205 13 C -0.059 4.059 14 C 0.065 3.935 15 C -0.225 4.225 16 C -0.152 4.152 17 C -0.061 4.061 18 C -0.231 4.231 19 C -0.041 4.041 20 N -0.213 5.213 21 C 0.050 3.950 22 N -0.176 5.176 23 H 0.259 0.741 24 C -0.034 4.034 25 F -0.138 7.138 26 H 0.097 0.903 27 H 0.147 0.853 28 H 0.120 0.880 29 H 0.124 0.876 30 H 0.169 0.831 31 H 0.149 0.851 32 H 0.150 0.850 33 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 1.365 -9.831 -0.002 9.926 hybrid contribution 0.039 0.701 0.306 0.766 sum 1.404 -9.130 0.304 9.243 Atomic orbital electron populations 1.69798 1.07658 1.29894 1.33605 1.25932 0.94809 1.01628 0.91901 0.86184 0.80552 0.79838 0.79567 1.18973 1.20023 1.18385 1.19543 0.98518 0.90883 1.39121 0.89747 1.17531 0.92725 0.90539 0.90969 1.21344 0.97598 0.97623 0.98698 1.20673 0.99287 0.92560 1.00407 1.20233 0.98625 0.97232 1.04419 1.17702 0.98809 0.86872 1.02559 1.18995 0.81359 0.94388 0.98718 1.21565 0.98502 0.91694 1.10773 1.19871 0.93976 0.95685 1.05670 1.20930 0.99168 0.91318 0.94679 1.21740 0.93421 1.01401 1.06563 1.22326 0.96811 0.89830 0.95171 1.66419 1.33764 1.05474 1.15609 1.18356 0.90391 0.86926 0.99347 1.41816 1.08013 1.11092 1.56673 0.74132 1.17872 0.90828 0.93926 1.00818 1.91276 1.53327 1.97158 1.71995 0.90340 0.85329 0.87956 0.87595 0.83141 0.85107 0.85030 0.82769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -18.93 10.96 55.55 0.61 -18.32 16 2 C 0.08 1.82 5.14 -17.33 -0.09 1.73 16 3 Si 0.91 17.82 29.59 -169.99 -5.03 12.79 16 4 H -0.26 -5.06 7.11 56.52 0.40 -4.65 16 5 H -0.28 -5.22 7.11 56.52 0.40 -4.82 16 6 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 7 C -0.45 -11.56 8.78 -37.78 -0.33 -11.89 16 8 H 0.08 2.15 7.73 -52.49 -0.41 1.74 16 9 C 0.09 2.17 5.57 -106.80 -0.60 1.57 16 10 C -0.13 -3.15 8.69 -38.83 -0.34 -3.48 16 11 C -0.11 -2.30 10.00 -39.72 -0.40 -2.70 16 12 C -0.18 -3.74 9.58 -38.94 -0.37 -4.11 16 13 C -0.06 -1.24 5.81 -104.98 -0.61 -1.85 16 14 C 0.17 3.41 6.35 -82.25 -0.52 2.89 16 15 C -0.20 -3.55 10.68 -37.37 -0.40 -3.95 16 16 C -0.14 -2.45 6.37 -105.13 -0.67 -3.12 16 17 C -0.03 -0.46 10.23 -38.99 -0.40 -0.86 16 18 C -0.21 -2.46 10.10 -39.44 -0.40 -2.86 16 19 C 0.12 1.64 11.15 -17.48 -0.19 1.44 16 20 N -0.50 -8.43 10.38 -12.22 -0.13 -8.56 16 21 C 0.28 5.17 8.42 -155.59 -1.31 3.86 16 22 N -0.57 -10.77 5.73 -8.77 -0.05 -10.82 16 23 H 0.42 7.62 8.44 -40.82 -0.34 7.28 16 24 C -0.01 -0.33 7.29 -38.23 -0.28 -0.61 16 25 F -0.16 -3.82 15.45 2.25 0.03 -3.79 16 26 H 0.29 6.21 8.30 -40.82 -0.34 5.87 16 27 H 0.13 3.10 6.16 -52.49 -0.32 2.77 16 28 H 0.10 1.83 8.06 -52.49 -0.42 1.41 16 29 H 0.11 1.86 7.97 -52.49 -0.42 1.44 16 30 H 0.15 2.34 8.06 -52.49 -0.42 1.91 16 31 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 32 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 33 H 0.16 1.46 8.06 -52.49 -0.42 1.04 16 LS Contribution 296.46 15.07 4.47 4.47 Total: -1.00 -27.54 296.46 -9.74 -37.28 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -2.74 Total: 10.89 kcal Atomic # 6 Polarization: -17.04 SS G_CDS: -6.90 Total: -23.95 kcal Atomic # 7 Polarization: -38.12 SS G_CDS: 0.43 Total: -37.69 kcal Atomic # 9 Polarization: -3.82 SS G_CDS: 0.03 Total: -3.79 kcal Atomic # 14 Polarization: 17.82 SS G_CDS: -5.03 Total: 12.79 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -27.54 -9.74 -37.28 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245401633.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.347 kcal (2) G-P(sol) polarization free energy of solvation -27.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds