Wall clock time and date at job start Tue Mar 31 2020 06:38:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30836 * 1 3 3 Si 1.86804 * 119.99780 * 2 1 4 4 H 1.48492 * 109.47505 * 240.00441 * 3 2 1 5 5 H 1.48505 * 109.46980 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47040 * 119.99843 * 3 2 1 7 7 C 1.39935 * 120.00423 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99829 * 198.05788 * 7 2 1 9 9 C 1.40855 * 119.99916 * 18.05008 * 7 2 1 10 10 C 1.41074 * 120.06958 * 24.87595 * 9 7 2 11 11 C 1.36058 * 119.95249 * 179.97438 * 10 9 7 12 12 C 1.40288 * 120.11683 * 0.02562 * 11 10 9 13 13 C 1.47142 * 119.92972 * 180.02562 * 12 11 10 14 14 C 1.36200 * 125.42228 * 319.67200 * 13 12 11 15 15 C 1.41471 * 107.58882 * 179.87995 * 14 13 12 16 16 C 1.40189 * 133.67672 * 180.02562 * 15 14 13 17 17 C 1.38075 * 118.09540 * 180.35052 * 16 15 14 18 18 C 1.38707 * 119.48157 * 0.02562 * 17 16 15 19 19 N 1.31648 * 121.56767 * 0.02562 * 18 17 16 20 20 C 1.32586 * 121.71803 * 359.97438 * 19 18 17 21 21 N 1.37574 * 132.86998 * 179.97438 * 20 19 18 22 22 H 0.96998 * 125.52683 * 0.07715 * 21 20 19 23 23 C 1.40508 * 120.14530 * 359.95719 * 12 11 10 24 24 F 1.35101 * 119.97906 * 180.02562 * 23 12 11 25 25 C 1.36308 * 120.04079 * 0.03982 * 23 12 11 26 26 H 0.96998 * 120.00875 * 359.97438 * 1 2 3 27 27 H 1.08001 * 120.02519 * 359.69905 * 10 9 7 28 28 H 1.08004 * 119.94029 * 180.02562 * 11 10 9 29 29 H 1.08001 * 126.20887 * 0.02562 * 14 13 12 30 30 H 1.07997 * 120.94639 * 0.35466 * 16 15 14 31 31 H 1.08003 * 120.25764 * 179.97438 * 17 16 15 32 32 H 1.08002 * 119.21578 * 180.02562 * 18 17 16 33 33 H 1.07997 * 120.05940 * 179.97438 * 25 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.0960 1.6966 -1.2125 5 1 1.2772 2.7465 0.0006 6 1 3.0960 1.6965 1.2125 7 6 2.0081 -1.2118 -0.0005 8 1 3.0482 -1.2349 0.2894 9 6 1.3559 -2.4015 -0.3790 10 6 0.2308 -2.3513 -1.2286 11 6 -0.3971 -3.5020 -1.5931 12 6 0.0721 -4.7385 -1.1252 13 6 -0.6098 -5.9804 -1.5225 14 6 -1.9584 -6.1441 -1.6203 15 6 -2.1987 -7.4762 -2.0316 16 6 -3.3617 -8.2127 -2.2965 17 6 -3.2226 -9.5312 -2.6822 18 6 -1.9534 -10.0796 -2.7937 19 7 -0.8724 -9.3725 -2.5398 20 6 -0.9421 -8.1024 -2.1657 21 7 0.0147 -7.1662 -1.8484 22 1 0.9732 -7.3155 -1.8543 23 6 1.1925 -4.7938 -0.2792 24 9 1.6418 -5.9865 0.1690 25 6 1.8263 -3.6448 0.0899 26 1 -0.4851 0.8400 0.0004 27 1 -0.1347 -1.3998 -1.5858 28 1 -1.2582 -3.4633 -2.2438 29 1 -2.7082 -5.3925 -1.4223 30 1 -4.3383 -7.7617 -2.2017 31 1 -4.0952 -10.1311 -2.8945 32 1 -1.8496 -11.1112 -3.0961 33 1 2.6873 -3.6870 0.7405 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245401642.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:45 Heat of formation + Delta-G solvation = 29.362223 kcal Electronic energy + Delta-G solvation = -20273.647978 eV Core-core repulsion = 16985.269530 eV Total energy + Delta-G solvation = -3288.378448 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -48.06105 -41.15602 -37.97273 -37.07589 -34.03931 -32.69714 -30.93828 -29.86843 -29.20192 -28.22176 -25.78801 -23.03050 -22.29644 -21.49514 -20.92606 -19.85685 -17.96489 -17.84440 -16.51639 -15.73922 -15.52833 -15.34427 -14.99774 -14.69819 -14.57348 -14.47918 -13.70537 -13.26792 -12.82928 -12.76238 -12.59117 -12.42074 -12.13373 -11.95576 -11.77070 -11.38133 -11.21146 -10.86771 -10.70766 -10.40262 -10.18598 -9.81969 -9.50997 -9.12616 -8.29893 -8.03225 -7.75544 -7.21980 -7.10321 -4.76503 1.19427 1.68557 2.20473 2.66385 2.84759 2.87455 2.90761 3.16123 3.39220 3.63245 4.20689 4.24514 4.82964 5.02387 5.20617 5.22071 5.31121 5.36049 5.45621 5.77466 5.89309 6.00698 6.16602 6.22291 6.52709 6.54980 6.60755 6.64749 6.76955 6.84273 7.00106 7.25631 7.28004 7.35122 7.62544 7.66993 7.76860 7.82915 8.20293 8.34316 8.42010 8.50499 9.72128 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.040524 B = 0.003695 C = 0.003454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.788303 B = 7576.009330 C = 8105.710975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.765 5.765 2 C 0.073 3.927 3 Si 0.918 3.082 4 H -0.259 1.259 5 H -0.274 1.274 6 H -0.261 1.261 7 C -0.433 4.433 8 H 0.088 0.912 9 C 0.139 3.861 10 C -0.178 4.178 11 C -0.038 4.038 12 C -0.238 4.238 13 C 0.204 3.796 14 C -0.227 4.227 15 C -0.127 4.127 16 C -0.047 4.047 17 C -0.204 4.204 18 C 0.112 3.888 19 N -0.497 5.497 20 C 0.265 3.735 21 N -0.573 5.573 22 H 0.418 0.582 23 C 0.147 3.853 24 F -0.164 7.164 25 C -0.265 4.265 26 H 0.291 0.709 27 H 0.127 0.873 28 H 0.106 0.894 29 H 0.144 0.856 30 H 0.129 0.871 31 H 0.129 0.871 32 H 0.152 0.848 33 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.918 -6.184 -3.505 8.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.387 5.387 2 C -0.149 4.149 3 Si 0.741 3.259 4 H -0.183 1.183 5 H -0.199 1.199 6 H -0.186 1.186 7 C -0.460 4.460 8 H 0.106 0.894 9 C 0.135 3.865 10 C -0.197 4.197 11 C -0.058 4.058 12 C -0.241 4.241 13 C 0.095 3.905 14 C -0.251 4.251 15 C -0.134 4.134 16 C -0.074 4.074 17 C -0.226 4.226 18 C -0.054 4.054 19 N -0.209 5.209 20 C 0.031 3.969 21 N -0.178 5.178 22 H 0.256 0.744 23 C 0.127 3.873 24 F -0.143 7.143 25 C -0.286 4.286 26 H 0.102 0.898 27 H 0.145 0.855 28 H 0.124 0.876 29 H 0.162 0.838 30 H 0.147 0.853 31 H 0.147 0.853 32 H 0.170 0.830 33 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -3.126 -6.397 -3.522 7.943 hybrid contribution 0.022 0.756 0.293 0.811 sum -3.104 -5.641 -3.228 7.203 Atomic orbital electron populations 1.69798 1.07874 1.30600 1.30429 1.26101 0.94897 1.02087 0.91832 0.86184 0.80185 0.79079 0.80476 1.18322 1.19865 1.18555 1.19722 0.98610 0.91112 1.36524 0.89424 1.17497 0.90401 0.91271 0.87332 1.21026 0.99728 0.97261 1.01657 1.20267 0.97616 0.90531 0.97349 1.17315 1.02988 0.90321 1.13493 1.18960 0.91067 0.84350 0.96101 1.20589 0.94070 0.95718 1.14729 1.18895 0.93303 0.95944 1.05282 1.20972 0.97119 0.93343 0.95919 1.21685 0.98602 0.96158 1.06153 1.22246 0.86946 0.98589 0.97623 1.66346 1.34425 1.04969 1.15209 1.18424 0.87664 0.88968 1.01806 1.42055 1.08287 1.08792 1.58674 0.74416 1.17306 0.94054 0.79733 0.96200 1.91349 1.88875 1.45874 1.88190 1.20588 1.06214 0.91602 1.10159 0.89818 0.85537 0.87639 0.83778 0.85339 0.85305 0.83036 0.87273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -17.29 10.97 55.55 0.61 -16.68 16 2 C 0.07 1.61 5.12 -17.34 -0.09 1.52 16 3 Si 0.92 16.31 29.60 -169.99 -5.03 11.28 16 4 H -0.26 -4.60 7.11 56.52 0.40 -4.19 16 5 H -0.27 -4.75 7.11 56.52 0.40 -4.35 16 6 H -0.26 -4.63 7.11 56.52 0.40 -4.23 16 7 C -0.43 -10.13 9.02 -37.96 -0.34 -10.47 16 8 H 0.09 1.95 7.91 -52.49 -0.42 1.53 16 9 C 0.14 3.32 5.57 -106.80 -0.59 2.73 16 10 C -0.18 -4.09 8.62 -39.29 -0.34 -4.43 16 11 C -0.04 -0.82 9.51 -39.59 -0.38 -1.19 16 12 C -0.24 -5.11 5.84 -104.66 -0.61 -5.72 16 13 C 0.20 4.07 6.35 -82.24 -0.52 3.54 16 14 C -0.23 -4.22 10.48 -39.08 -0.41 -4.63 16 15 C -0.13 -2.25 6.18 -106.87 -0.66 -2.91 16 16 C -0.05 -0.68 10.24 -38.91 -0.40 -1.08 16 17 C -0.20 -2.57 10.09 -39.47 -0.40 -2.97 16 18 C 0.11 1.55 11.15 -17.46 -0.19 1.35 16 19 N -0.50 -8.61 10.38 -12.16 -0.13 -8.74 16 20 C 0.27 4.95 8.41 -155.51 -1.31 3.64 16 21 N -0.57 -10.82 5.79 -8.74 -0.05 -10.87 16 22 H 0.42 7.38 8.46 -40.82 -0.35 7.03 16 23 C 0.15 3.27 7.23 -39.42 -0.28 2.98 16 24 F -0.16 -3.49 16.00 2.25 0.04 -3.46 16 25 C -0.27 -6.11 9.70 -39.25 -0.38 -6.49 16 26 H 0.29 5.91 8.30 -40.82 -0.34 5.57 16 27 H 0.13 2.95 6.16 -52.49 -0.32 2.63 16 28 H 0.11 2.01 7.98 -52.48 -0.42 1.59 16 29 H 0.14 2.44 8.06 -52.49 -0.42 2.02 16 30 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 31 H 0.13 1.17 8.06 -52.48 -0.42 0.74 16 32 H 0.15 1.54 8.06 -52.49 -0.42 1.11 16 33 H 0.11 2.38 8.06 -52.49 -0.42 1.96 16 LS Contribution 296.64 15.07 4.47 4.47 Total: -1.00 -25.88 296.64 -9.75 -35.63 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: -2.75 Total: 12.48 kcal Atomic # 6 Polarization: -17.21 SS G_CDS: -6.91 Total: -24.12 kcal Atomic # 7 Polarization: -36.73 SS G_CDS: 0.43 Total: -36.29 kcal Atomic # 9 Polarization: -3.49 SS G_CDS: 0.04 Total: -3.46 kcal Atomic # 14 Polarization: 16.31 SS G_CDS: -5.03 Total: 11.28 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -25.88 -9.75 -35.63 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245401642.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.997 kcal (2) G-P(sol) polarization free energy of solvation -25.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds