Wall clock time and date at job start Tue Mar 31 2020 06:38:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30863 * 1 3 3 Si 1.86797 * 120.00356 * 2 1 4 4 H 1.48495 * 109.47228 * 275.41693 * 3 2 1 5 5 H 1.48506 * 109.46859 * 35.41784 * 3 2 1 6 6 H 1.48503 * 109.46821 * 155.41339 * 3 2 1 7 7 C 1.39905 * 119.99560 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99894 * 341.86870 * 7 2 1 9 9 C 1.41321 * 119.99993 * 161.86412 * 7 2 1 10 10 C 1.40484 * 120.19480 * 329.99797 * 9 7 2 11 11 C 1.38893 * 119.63282 * 179.97438 * 10 9 7 12 12 C 1.47875 * 119.98871 * 179.97438 * 11 10 9 13 13 C 1.35616 * 125.23251 * 180.02562 * 12 11 10 14 14 C 1.46085 * 106.81072 * 180.02562 * 13 12 11 15 15 C 1.39873 * 134.11047 * 179.97438 * 14 13 12 16 16 C 1.38175 * 118.04017 * 180.02562 * 15 14 13 17 17 C 1.38671 * 119.41613 * 359.97438 * 16 15 14 18 18 N 1.31619 * 121.61103 * 0.03261 * 17 16 15 19 19 C 1.32662 * 121.70235 * 359.96729 * 18 17 16 20 20 N 1.37465 * 132.95607 * 179.97438 * 19 18 17 21 21 H 0.97004 * 125.02948 * 0.06820 * 20 19 18 22 22 C 1.40041 * 120.03025 * 0.25631 * 11 10 9 23 23 C 1.38176 * 120.39145 * 359.48287 * 22 11 10 24 24 C 1.38106 * 120.37575 * 0.51597 * 23 22 11 25 25 F 1.35098 * 120.02025 * 179.76220 * 24 23 22 26 26 H 0.97003 * 119.99688 * 359.97438 * 1 2 3 27 27 H 1.07996 * 120.18480 * 359.95285 * 10 9 7 28 28 H 1.08005 * 126.59420 * 0.04297 * 13 12 11 29 29 H 1.07990 * 120.98061 * 0.31019 * 15 14 13 30 30 H 1.07994 * 120.28894 * 180.02562 * 16 15 14 31 31 H 1.08000 * 119.19596 * 180.02562 * 17 16 15 32 32 H 1.07991 * 119.80711 * 179.72230 * 22 11 10 33 33 H 1.08004 * 119.80892 * 180.23845 * 23 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 2.3758 2.1124 -1.3938 5 1 1.5021 2.6169 0.8114 6 1 3.5928 1.4096 0.5825 7 6 2.0081 -1.2117 -0.0005 8 1 1.5082 -2.1238 0.2901 9 6 3.3686 -1.2420 -0.3815 10 6 3.8626 -0.3128 -1.3122 11 6 5.2019 -0.3529 -1.6779 12 6 5.7302 0.6210 -2.6573 13 6 7.0144 0.6780 -3.0892 14 6 7.0909 1.7822 -4.0426 15 6 8.1196 2.3332 -4.8138 16 6 7.8168 3.4075 -5.6283 17 6 6.5200 3.8979 -5.6548 18 7 5.5659 3.3652 -4.9211 19 6 5.7962 2.3329 -4.1204 20 7 4.9938 1.6092 -3.2706 21 1 4.0485 1.7707 -3.1250 22 6 6.0511 -1.3190 -1.1240 23 6 5.5676 -2.2300 -0.2045 24 6 4.2388 -2.2051 0.1709 25 9 3.7727 -3.1024 1.0670 26 1 -0.4850 0.8401 0.0004 27 1 3.2046 0.4283 -1.7412 28 1 7.8248 0.0313 -2.7867 29 1 9.1199 1.9279 -4.7773 30 1 8.5833 3.8607 -6.2394 31 1 6.2872 4.7375 -6.2930 32 1 7.0908 -1.3497 -1.4143 33 1 6.2317 -2.9686 0.2197 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245404587.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:27 Heat of formation + Delta-G solvation = 34.137143 kcal Electronic energy + Delta-G solvation = -20528.095052 eV Core-core repulsion = 17239.923660 eV Total energy + Delta-G solvation = -3288.171392 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -47.57291 -41.32805 -38.34752 -37.08083 -33.96228 -32.82817 -31.11072 -30.68590 -29.78244 -27.83093 -25.40834 -23.54107 -22.72500 -21.69526 -21.22689 -19.76932 -18.25006 -17.43936 -16.74061 -16.30192 -15.86378 -15.22181 -14.92999 -14.88987 -14.51823 -14.33221 -13.85995 -13.32810 -13.14441 -12.99027 -12.87232 -12.50645 -12.19445 -12.11541 -11.97213 -11.67787 -11.28574 -11.06351 -10.66091 -10.31933 -10.17965 -9.97119 -9.43201 -9.30406 -8.58132 -8.20082 -8.04692 -7.21144 -7.17009 -4.74714 0.91759 1.46463 1.94441 2.26832 2.79814 2.91266 2.98075 3.09675 3.23142 3.72713 3.99229 4.23546 4.59264 4.81923 4.85561 5.01883 5.08460 5.21764 5.39935 5.48483 5.60761 5.72741 5.84234 5.94587 6.01888 6.17344 6.29517 6.36060 6.58133 6.68845 6.83879 7.00265 7.04806 7.12691 7.27006 7.41355 7.48270 7.70805 8.08202 8.13093 8.27540 8.46985 9.81123 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.019834 B = 0.005542 C = 0.004470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.397835 B = 5050.971090 C = 6263.136718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.085 3.915 3 Si 0.906 3.094 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.240 1.240 7 C -0.434 4.434 8 H 0.099 0.901 9 C 0.067 3.933 10 C -0.207 4.207 11 C -0.015 4.015 12 C 0.165 3.835 13 C -0.197 4.197 14 C -0.145 4.145 15 C -0.034 4.034 16 C -0.208 4.208 17 C 0.127 3.873 18 N -0.500 5.500 19 C 0.285 3.715 20 N -0.578 5.578 21 H 0.419 0.581 22 C -0.188 4.188 23 C -0.111 4.111 24 C 0.003 3.997 25 F -0.153 7.153 26 H 0.290 0.710 27 H 0.105 0.895 28 H 0.153 0.847 29 H 0.132 0.868 30 H 0.133 0.867 31 H 0.156 0.844 32 H 0.114 0.886 33 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.123 5.326 -7.073 15.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.136 4.136 3 Si 0.732 3.268 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.163 1.163 7 C -0.461 4.461 8 H 0.117 0.883 9 C 0.063 3.937 10 C -0.227 4.227 11 C -0.016 4.016 12 C 0.057 3.943 13 C -0.221 4.221 14 C -0.152 4.152 15 C -0.060 4.060 16 C -0.230 4.230 17 C -0.039 4.039 18 N -0.213 5.213 19 C 0.052 3.948 20 N -0.185 5.185 21 H 0.258 0.742 22 C -0.208 4.208 23 C -0.130 4.130 24 C -0.017 4.017 25 F -0.131 7.131 26 H 0.101 0.899 27 H 0.123 0.877 28 H 0.171 0.829 29 H 0.150 0.850 30 H 0.151 0.849 31 H 0.173 0.827 32 H 0.132 0.868 33 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 10.786 5.682 -6.963 14.039 hybrid contribution 0.332 0.424 0.179 0.567 sum 11.118 6.106 -6.785 14.385 Atomic orbital electron populations 1.69683 1.08030 1.30728 1.32957 1.26154 0.94807 1.01602 0.91054 0.86390 0.81800 0.79795 0.78835 1.19931 1.20897 1.16325 1.19445 0.92578 0.96684 1.37429 0.88277 1.17540 0.93392 0.91236 0.91556 1.20813 0.94086 1.04503 1.03261 1.17763 0.93757 0.94441 0.95676 1.19084 0.90401 0.89752 0.95081 1.21570 0.95893 1.01653 1.02985 1.19866 0.93926 0.99678 1.01721 1.20938 0.98020 0.94062 0.92969 1.21764 0.98281 0.99752 1.03154 1.22360 0.88280 0.97880 0.95343 1.66440 1.37077 1.09979 1.07802 1.18349 0.88854 0.93283 0.94356 1.41810 1.11889 1.27763 1.36998 0.74196 1.20111 0.98458 0.98860 1.03392 1.20531 0.93695 0.99769 0.99003 1.17888 0.92111 0.95663 0.96054 1.91332 1.89537 1.66208 1.66072 0.89938 0.87717 0.82923 0.84997 0.84912 0.82658 0.86821 0.86715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.21 13.93 55.55 0.77 -19.43 16 2 C 0.08 2.13 5.40 -17.34 -0.09 2.04 16 3 Si 0.91 19.78 24.52 -169.99 -4.17 15.61 16 4 H -0.27 -5.60 6.71 56.52 0.38 -5.22 16 5 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 6 H -0.24 -5.40 6.86 56.52 0.39 -5.01 16 7 C -0.43 -11.37 9.25 -37.79 -0.35 -11.72 16 8 H 0.10 2.77 7.97 -52.49 -0.42 2.35 16 9 C 0.07 1.62 5.10 -106.80 -0.55 1.07 16 10 C -0.21 -4.63 6.79 -38.49 -0.26 -4.89 16 11 C -0.02 -0.30 5.87 -105.03 -0.62 -0.92 16 12 C 0.16 3.01 6.86 -82.24 -0.56 2.44 16 13 C -0.20 -3.14 10.41 -37.37 -0.39 -3.53 16 14 C -0.14 -2.28 6.37 -105.13 -0.67 -2.94 16 15 C -0.03 -0.41 10.23 -38.99 -0.40 -0.81 16 16 C -0.21 -2.27 10.10 -39.44 -0.40 -2.67 16 17 C 0.13 1.59 11.14 -17.48 -0.19 1.40 16 18 N -0.50 -8.18 10.39 -12.22 -0.13 -8.31 16 19 C 0.29 4.99 8.42 -155.60 -1.31 3.68 16 20 N -0.58 -10.53 5.96 -8.77 -0.05 -10.59 16 21 H 0.42 7.53 7.93 -40.82 -0.32 7.21 16 22 C -0.19 -3.48 9.54 -38.93 -0.37 -3.85 16 23 C -0.11 -2.16 9.99 -39.65 -0.40 -2.55 16 24 C 0.00 0.07 7.31 -38.56 -0.28 -0.21 16 25 F -0.15 -3.55 16.76 2.25 0.04 -3.51 16 26 H 0.29 6.66 8.30 -40.82 -0.34 6.32 16 27 H 0.11 2.31 3.73 -52.49 -0.20 2.12 16 28 H 0.15 2.04 7.16 -52.48 -0.38 1.66 16 29 H 0.13 1.24 8.06 -52.49 -0.42 0.81 16 30 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 31 H 0.16 1.39 8.06 -52.49 -0.42 0.97 16 32 H 0.11 1.74 6.88 -52.49 -0.36 1.38 16 33 H 0.11 1.89 8.06 -52.48 -0.42 1.47 16 LS Contribution 289.22 15.07 4.36 4.36 Total: -1.00 -27.74 289.22 -8.55 -36.30 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -2.54 Total: 9.05 kcal Atomic # 6 Polarization: -16.64 SS G_CDS: -6.84 Total: -23.48 kcal Atomic # 7 Polarization: -38.92 SS G_CDS: 0.59 Total: -38.33 kcal Atomic # 9 Polarization: -3.55 SS G_CDS: 0.04 Total: -3.51 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -4.17 Total: 15.61 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -27.74 -8.55 -36.30 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245404587.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.433 kcal (2) G-P(sol) polarization free energy of solvation -27.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds