Wall clock time and date at job start Tue Mar 31 2020 06:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30731 * 1 3 3 Si 1.86794 * 120.00146 * 2 1 4 4 H 1.48498 * 109.47165 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46952 * 299.99807 * 3 2 1 6 6 H 1.48495 * 109.47601 * 59.99666 * 3 2 1 7 7 C 1.40046 * 119.99714 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99782 * 163.15175 * 7 2 1 9 9 C 1.41530 * 120.00139 * 343.16412 * 7 2 1 10 10 C 1.41172 * 120.97498 * 336.07822 * 9 7 2 11 11 C 1.37738 * 119.11580 * 180.02562 * 10 9 7 12 12 N 1.31914 * 121.18797 * 359.74352 * 11 10 9 13 13 C 1.32957 * 122.17537 * 0.53123 * 12 11 10 14 14 C 1.47845 * 119.63281 * 179.74280 * 13 12 11 15 15 C 1.35632 * 125.22515 * 359.73346 * 14 13 12 16 16 C 1.46161 * 106.95173 * 180.22278 * 15 14 13 17 17 C 1.39858 * 133.76424 * 179.73307 * 16 15 14 18 18 C 1.37729 * 119.63513 * 180.02562 * 17 16 15 19 19 F 1.35104 * 119.83231 * 180.02562 * 18 17 16 20 20 C 1.39066 * 120.34530 * 359.97438 * 18 17 16 21 21 C 1.37730 * 120.67136 * 359.64746 * 20 18 17 22 22 C 1.39116 * 119.98591 * 0.58965 * 21 20 18 23 23 N 1.37610 * 125.22749 * 179.72758 * 14 13 12 24 24 H 0.97005 * 125.10670 * 0.02750 * 23 14 13 25 25 C 1.39146 * 120.72950 * 359.47561 * 13 12 11 26 26 H 0.97005 * 120.00157 * 0.02562 * 1 2 3 27 27 H 1.07996 * 120.44636 * 0.02562 * 10 9 7 28 28 H 1.08001 * 119.40525 * 179.97438 * 11 10 9 29 29 H 1.08008 * 126.52610 * 359.96280 * 15 14 13 30 30 H 1.07998 * 120.18295 * 0.06891 * 17 16 15 31 31 H 1.07993 * 119.66694 * 180.02562 * 20 18 17 32 32 H 1.08004 * 120.00381 * 179.87812 * 21 20 18 33 33 H 1.08005 * 120.62551 * 180.27905 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 3.7013 1.3463 0.0006 5 1 1.8826 2.3963 -1.2126 6 1 1.8826 2.3965 1.2124 7 6 2.0075 -1.2129 0.0005 8 1 3.0527 -1.2331 -0.2705 9 6 1.3453 -2.4121 0.3561 10 6 0.1908 -2.3913 1.1683 11 6 -0.4229 -3.5813 1.4913 12 7 0.0461 -4.7332 1.0516 13 6 1.1322 -4.8106 0.2885 14 6 1.6119 -6.1322 -0.1684 15 6 1.0321 -7.3213 0.1309 16 6 1.8305 -8.3599 -0.5174 17 6 1.7420 -9.7545 -0.5730 18 6 2.6772 -10.4682 -1.2892 19 9 2.5952 -11.8156 -1.3461 20 6 3.7049 -9.8092 -1.9551 21 6 3.8004 -8.4357 -1.9157 22 6 2.8699 -7.6945 -1.1944 23 7 2.7154 -6.3450 -0.9626 24 1 3.2970 -5.6495 -1.3075 25 6 1.8190 -3.6609 -0.0893 26 1 -0.4850 0.8401 -0.0004 27 1 -0.2059 -1.4549 1.5316 28 1 -1.3061 -3.5709 2.1127 29 1 0.1508 -7.4723 0.7367 30 1 0.9443 -10.2690 -0.0579 31 1 4.4320 -10.3796 -2.5138 32 1 4.6041 -7.9351 -2.4351 33 1 2.6985 -3.7254 -0.7129 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245573785.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:40 Heat of formation + Delta-G solvation = 27.002962 kcal Electronic energy + Delta-G solvation = -19875.911912 eV Core-core repulsion = 16587.431159 eV Total energy + Delta-G solvation = -3288.480753 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -48.67004 -40.98158 -38.41387 -36.39516 -34.31367 -31.91468 -30.91855 -30.67851 -28.77315 -27.73877 -26.13171 -23.39296 -22.17218 -21.56444 -21.10904 -19.93014 -18.21867 -17.22847 -17.02859 -15.97919 -15.55563 -15.42952 -15.02889 -14.54464 -14.32571 -14.22101 -14.00734 -13.60420 -13.01523 -12.92015 -12.68318 -12.51652 -12.41562 -12.24794 -11.59986 -11.34897 -11.15789 -11.06686 -10.77677 -10.44881 -10.11498 -9.70217 -9.59118 -8.48107 -8.28900 -8.21118 -7.70366 -7.15474 -7.01831 -4.80213 0.98868 1.52043 2.19916 2.56725 2.91806 2.96548 2.99995 3.22481 3.45077 3.71328 3.85322 4.39646 4.48617 4.71163 4.96278 5.06055 5.34169 5.44957 5.48024 5.51727 5.79573 5.97238 6.04989 6.22642 6.27774 6.35928 6.41816 6.56189 6.66246 6.88815 6.92656 7.03202 7.07806 7.19762 7.35315 7.62132 7.71612 7.87250 8.22541 8.50622 8.53303 9.32138 9.87973 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.036782 B = 0.003370 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.064901 B = 8306.898782 C = 8990.539782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.781 5.781 2 C 0.077 3.923 3 Si 0.914 3.086 4 H -0.259 1.259 5 H -0.272 1.272 6 H -0.269 1.269 7 C -0.454 4.454 8 H 0.083 0.917 9 C 0.128 3.872 10 C -0.204 4.204 11 C 0.091 3.909 12 N -0.551 5.551 13 C 0.167 3.833 14 C 0.166 3.834 15 C -0.178 4.178 16 C -0.082 4.082 17 C -0.106 4.106 18 C 0.060 3.940 19 F -0.148 7.148 20 C -0.140 4.140 21 C -0.099 4.099 22 C 0.090 3.910 23 N -0.585 5.585 24 H 0.417 0.583 25 C -0.257 4.257 26 H 0.286 0.714 27 H 0.129 0.871 28 H 0.128 0.872 29 H 0.155 0.845 30 H 0.133 0.867 31 H 0.133 0.867 32 H 0.128 0.872 33 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.784 -8.729 -2.175 10.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.406 5.406 2 C -0.143 4.143 3 Si 0.737 3.263 4 H -0.182 1.182 5 H -0.197 1.197 6 H -0.194 1.194 7 C -0.485 4.485 8 H 0.101 0.899 9 C 0.120 3.880 10 C -0.226 4.226 11 C -0.060 4.060 12 N -0.266 5.266 13 C 0.033 3.967 14 C 0.058 3.942 15 C -0.203 4.203 16 C -0.088 4.088 17 C -0.126 4.126 18 C 0.040 3.960 19 F -0.127 7.127 20 C -0.160 4.160 21 C -0.120 4.120 22 C -0.019 4.019 23 N -0.189 5.189 24 H 0.255 0.745 25 C -0.281 4.281 26 H 0.097 0.903 27 H 0.147 0.853 28 H 0.146 0.854 29 H 0.172 0.828 30 H 0.151 0.849 31 H 0.151 0.849 32 H 0.146 0.854 33 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 4.166 -9.261 -1.969 10.344 hybrid contribution 1.012 1.809 -0.517 2.137 sum 5.178 -7.451 -2.486 9.408 Atomic orbital electron populations 1.69752 1.07789 1.29872 1.33143 1.25996 0.94811 1.01746 0.91763 0.86161 0.80941 0.80279 0.78870 1.18207 1.19702 1.19385 1.19649 0.97945 0.90746 1.40116 0.89875 1.17714 0.90761 0.91842 0.87651 1.22328 0.99981 0.98372 1.01922 1.21987 0.98179 0.88051 0.97825 1.67204 1.13771 1.29383 1.16210 1.18254 0.93468 0.88182 0.96839 1.18670 0.87607 0.93953 0.94015 1.21702 1.02868 0.88556 1.07131 1.18995 0.96723 0.92278 1.00775 1.20398 0.99294 0.92386 1.00475 1.17238 0.98694 0.76692 1.03389 1.91450 1.96268 1.29559 1.95434 1.20628 0.99068 0.93857 1.02474 1.19800 0.98737 0.92500 1.00921 1.18223 0.98591 0.83604 1.01454 1.41840 1.26109 1.05650 1.45293 0.74471 1.21731 1.04424 0.93174 1.08761 0.90329 0.85279 0.85428 0.82753 0.84907 0.84894 0.85428 0.88451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.55 10.92 55.55 0.61 -17.94 16 2 C 0.08 1.78 5.20 -17.34 -0.09 1.69 16 3 Si 0.91 17.08 29.59 -169.99 -5.03 12.05 16 4 H -0.26 -4.80 7.11 56.52 0.40 -4.40 16 5 H -0.27 -5.03 7.11 56.52 0.40 -4.62 16 6 H -0.27 -4.96 7.11 56.52 0.40 -4.56 16 7 C -0.45 -11.05 9.12 -37.65 -0.34 -11.39 16 8 H 0.08 1.93 7.90 -52.49 -0.41 1.51 16 9 C 0.13 3.17 5.60 -106.56 -0.60 2.57 16 10 C -0.20 -4.92 8.79 -38.65 -0.34 -5.26 16 11 C 0.09 2.06 11.15 -17.70 -0.20 1.86 16 12 N -0.55 -12.58 9.98 -10.00 -0.10 -12.68 16 13 C 0.17 3.70 6.74 -83.11 -0.56 3.14 16 14 C 0.17 3.17 6.87 -82.27 -0.57 2.60 16 15 C -0.18 -3.20 10.70 -37.34 -0.40 -3.60 16 16 C -0.08 -1.34 6.35 -105.16 -0.67 -2.00 16 17 C -0.11 -1.52 10.08 -39.16 -0.39 -1.92 16 18 C 0.06 0.82 7.28 -39.46 -0.29 0.53 16 19 F -0.15 -2.01 17.26 2.25 0.04 -1.97 16 20 C -0.14 -1.70 9.99 -39.46 -0.39 -2.09 16 21 C -0.10 -1.23 10.06 -39.44 -0.40 -1.63 16 22 C 0.09 1.37 7.26 -83.90 -0.61 0.76 16 23 N -0.59 -9.41 5.97 -7.28 -0.04 -9.45 16 24 H 0.42 5.81 7.91 -40.82 -0.32 5.48 16 25 C -0.26 -5.84 9.51 -38.28 -0.36 -6.20 16 26 H 0.29 6.10 8.29 -40.82 -0.34 5.76 16 27 H 0.13 3.16 6.20 -52.49 -0.33 2.83 16 28 H 0.13 2.48 8.06 -52.49 -0.42 2.06 16 29 H 0.15 2.70 8.06 -52.48 -0.42 2.28 16 30 H 0.13 1.67 8.06 -52.49 -0.42 1.24 16 31 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 32 H 0.13 1.23 8.06 -52.48 -0.42 0.81 16 33 H 0.10 1.98 7.04 -52.48 -0.37 1.61 16 LS Contribution 297.39 15.07 4.48 4.48 Total: -1.00 -26.65 297.39 -8.93 -35.58 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -2.68 Total: 10.86 kcal Atomic # 6 Polarization: -14.72 SS G_CDS: -6.21 Total: -20.93 kcal Atomic # 7 Polarization: -40.53 SS G_CDS: 0.46 Total: -40.07 kcal Atomic # 9 Polarization: -2.01 SS G_CDS: 0.04 Total: -1.97 kcal Atomic # 14 Polarization: 17.08 SS G_CDS: -5.03 Total: 12.05 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -26.65 -8.93 -35.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245573785.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.585 kcal (2) G-P(sol) polarization free energy of solvation -26.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds