Wall clock time and date at job start Tue Mar 31 2020 06:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30710 * 1 3 3 Si 1.86804 * 120.00178 * 2 1 4 4 H 1.48491 * 109.47326 * 270.00039 * 3 2 1 5 5 H 1.48506 * 109.46901 * 30.00106 * 3 2 1 6 6 H 1.48502 * 109.47017 * 149.99756 * 3 2 1 7 7 C 1.40129 * 120.00312 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00545 * 164.49198 * 7 2 1 9 9 C 1.40657 * 119.99836 * 344.49427 * 7 2 1 10 10 C 1.41334 * 121.37897 * 334.80884 * 9 7 2 11 11 C 1.36258 * 119.04253 * 180.25594 * 10 9 7 12 12 N 1.32164 * 122.22574 * 359.73047 * 11 10 9 13 13 C 1.31439 * 123.20771 * 0.02562 * 12 11 10 14 14 C 1.39883 * 120.48671 * 359.97438 * 13 12 11 15 15 C 1.46991 * 121.09837 * 179.97438 * 14 13 12 16 16 C 1.36354 * 125.42811 * 139.69404 * 15 14 13 17 17 C 1.41509 * 107.74359 * 179.83737 * 16 15 14 18 18 C 1.40170 * 133.34564 * 180.13194 * 17 16 15 19 19 C 1.36655 * 119.79682 * 180.31101 * 18 17 16 20 20 F 1.35096 * 119.72943 * 180.02562 * 19 18 17 21 21 C 1.39082 * 120.54465 * 0.02562 * 19 18 17 22 22 C 1.37835 * 120.62812 * 359.97438 * 21 19 18 23 23 C 1.39009 * 119.85464 * 0.02562 * 22 21 19 24 24 N 1.37850 * 125.42868 * 319.99325 * 15 14 13 25 25 H 0.96999 * 125.61949 * 0.02885 * 24 15 14 26 26 H 0.97005 * 120.00207 * 0.02562 * 1 2 3 27 27 H 1.07994 * 120.47453 * 359.96558 * 10 9 7 28 28 H 1.07999 * 118.88504 * 179.75942 * 11 10 9 29 29 H 1.08002 * 119.75597 * 179.97438 * 13 12 11 30 30 H 1.07999 * 126.12614 * 359.97438 * 16 15 14 31 31 H 1.08002 * 120.09925 * 0.33299 * 18 17 16 32 32 H 1.08007 * 119.68822 * 180.02562 * 21 19 18 33 33 H 1.08001 * 120.07723 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3071 0.0000 0.0000 3 14 2.2412 1.6177 0.0000 4 1 2.4887 2.0464 -1.4000 5 1 1.4386 2.6527 0.7001 6 1 3.5387 1.4401 0.7001 7 6 2.0078 -1.2135 0.0005 8 1 3.0582 -1.2307 -0.2495 9 6 1.3429 -2.4093 0.3267 10 6 0.1856 -2.4102 1.1379 11 6 -0.4176 -3.5969 1.4285 12 7 0.0397 -4.7502 0.9729 13 6 1.1045 -4.8510 0.2089 14 6 1.8198 -3.7089 -0.1660 15 6 3.0127 -3.8061 -1.0193 16 6 3.3325 -2.9500 -2.0313 17 6 4.5530 -3.3885 -2.5975 18 6 5.3537 -2.9123 -3.6448 19 6 6.5054 -3.5708 -3.9726 20 9 7.2764 -3.1103 -4.9819 21 6 6.8903 -4.7113 -3.2758 22 6 6.1181 -5.1970 -2.2426 23 6 4.9424 -4.5439 -1.8912 24 7 3.9833 -4.7807 -0.9279 25 1 3.9905 -5.5129 -0.2917 26 1 -0.4851 0.8401 -0.0004 27 1 -0.2121 -1.4841 1.5258 28 1 -1.2996 -3.5950 2.0519 29 1 1.4296 -5.8230 -0.1319 30 1 2.7585 -2.0900 -2.3431 31 1 5.0616 -2.0274 -4.1907 32 1 7.8035 -5.2207 -3.5463 33 1 6.4256 -6.0831 -1.7072 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245575251.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:55 Heat of formation + Delta-G solvation = 27.389304 kcal Electronic energy + Delta-G solvation = -20516.386161 eV Core-core repulsion = 17227.922161 eV Total energy + Delta-G solvation = -3288.464000 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -48.50292 -40.84396 -38.20983 -36.18354 -34.45022 -31.88206 -31.07682 -30.24474 -28.64670 -27.54497 -26.21318 -23.14339 -21.95279 -21.51638 -20.89490 -19.67889 -17.90865 -17.40545 -16.88372 -15.90092 -15.72487 -15.25370 -14.93972 -14.63106 -14.47073 -13.78215 -13.75054 -13.21515 -12.87126 -12.81870 -12.68754 -12.39787 -12.16703 -12.00378 -11.64974 -11.38434 -11.20573 -10.90312 -10.59475 -10.51001 -10.08066 -9.66363 -9.48359 -8.37838 -8.18626 -8.04219 -7.56338 -7.21703 -6.88811 -4.83410 1.23515 1.77050 2.28564 2.62961 2.89971 2.94427 3.08838 3.40189 3.64669 3.66569 4.13604 4.40438 4.64938 4.94218 5.21029 5.37772 5.49076 5.57590 5.61626 5.77897 5.97685 6.11040 6.13858 6.28703 6.47913 6.55375 6.59893 6.66030 6.74521 6.80404 7.07841 7.19011 7.23569 7.40772 7.49740 7.68275 7.82270 7.99073 8.20715 8.40621 8.47911 9.44657 9.73070 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.015258 B = 0.005907 C = 0.004417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.711449 B = 4738.958931 C = 6337.996473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.765 5.765 2 C 0.076 3.924 3 Si 0.914 3.086 4 H -0.263 1.263 5 H -0.272 1.272 6 H -0.256 1.256 7 C -0.420 4.420 8 H 0.096 0.904 9 C 0.155 3.845 10 C -0.212 4.212 11 C 0.092 3.908 12 N -0.586 5.586 13 C 0.141 3.859 14 C -0.248 4.248 15 C 0.207 3.793 16 C -0.211 4.211 17 C -0.062 4.062 18 C -0.120 4.120 19 C 0.066 3.934 20 F -0.152 7.152 21 C -0.158 4.158 22 C -0.092 4.092 23 C 0.064 3.936 24 N -0.591 5.591 25 H 0.412 0.588 26 H 0.290 0.710 27 H 0.128 0.872 28 H 0.119 0.881 29 H 0.118 0.882 30 H 0.150 0.850 31 H 0.129 0.871 32 H 0.128 0.872 33 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.298 -2.794 -2.375 8.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.387 5.387 2 C -0.148 4.148 3 Si 0.737 3.263 4 H -0.187 1.187 5 H -0.197 1.197 6 H -0.179 1.179 7 C -0.449 4.449 8 H 0.114 0.886 9 C 0.146 3.854 10 C -0.234 4.234 11 C -0.054 4.054 12 N -0.300 5.300 13 C -0.018 4.018 14 C -0.256 4.256 15 C 0.098 3.902 16 C -0.234 4.234 17 C -0.067 4.067 18 C -0.140 4.140 19 C 0.046 3.954 20 F -0.131 7.131 21 C -0.178 4.178 22 C -0.113 4.113 23 C -0.043 4.043 24 N -0.193 5.193 25 H 0.249 0.751 26 H 0.101 0.899 27 H 0.146 0.854 28 H 0.136 0.864 29 H 0.136 0.864 30 H 0.168 0.832 31 H 0.147 0.853 32 H 0.146 0.854 33 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 6.578 -3.442 -2.048 7.702 hybrid contribution 0.854 1.268 -0.140 1.535 sum 7.432 -2.174 -2.189 8.047 Atomic orbital electron populations 1.69746 1.07957 1.30500 1.30547 1.26135 0.94841 1.02080 0.91708 0.86177 0.80724 0.79440 0.79981 1.18731 1.19686 1.17924 1.19762 0.98117 0.90259 1.36776 0.88636 1.18656 0.89864 0.90277 0.86573 1.21874 1.00040 0.98338 1.03185 1.21625 0.97841 0.88632 0.97311 1.67036 1.16464 1.28917 1.17619 1.22053 0.91240 0.95384 0.93166 1.19858 0.99864 0.95386 1.10452 1.18807 0.88642 0.87757 0.94998 1.20837 0.97836 1.04488 1.00226 1.18017 0.96536 0.95609 0.96581 1.20229 0.93947 1.01076 0.98718 1.16970 0.91894 0.96630 0.89954 1.91431 1.74621 1.88700 1.58369 1.20548 1.01589 0.97387 0.98277 1.19745 0.92907 1.00182 0.98443 1.18272 0.93083 0.98470 0.94488 1.42291 1.19542 1.26884 1.30615 0.75075 0.89893 0.85397 0.86388 0.86423 0.83240 0.85287 0.85361 0.85959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -17.41 10.94 55.56 0.61 -16.80 16 2 C 0.08 1.67 5.22 -17.32 -0.09 1.58 16 3 Si 0.91 16.80 29.59 -169.99 -5.03 11.77 16 4 H -0.26 -4.81 7.11 56.52 0.40 -4.41 16 5 H -0.27 -4.87 7.11 56.52 0.40 -4.47 16 6 H -0.26 -4.76 7.11 56.52 0.40 -4.35 16 7 C -0.42 -9.84 7.49 -37.96 -0.28 -10.12 16 8 H 0.10 2.21 6.56 -52.49 -0.34 1.87 16 9 C 0.15 3.72 5.75 -104.29 -0.60 3.12 16 10 C -0.21 -5.01 8.73 -39.12 -0.34 -5.36 16 11 C 0.09 2.07 11.04 -18.12 -0.20 1.87 16 12 N -0.59 -13.33 10.26 -13.33 -0.14 -13.47 16 13 C 0.14 3.03 11.00 -17.10 -0.19 2.84 16 14 C -0.25 -5.51 6.02 -102.22 -0.62 -6.13 16 15 C 0.21 4.15 6.32 -82.29 -0.52 3.63 16 16 C -0.21 -4.24 8.94 -39.01 -0.35 -4.59 16 17 C -0.06 -1.13 6.16 -106.92 -0.66 -1.79 16 18 C -0.12 -2.00 10.03 -39.43 -0.40 -2.40 16 19 C 0.07 1.03 7.24 -39.84 -0.29 0.74 16 20 F -0.15 -2.35 17.25 2.25 0.04 -2.31 16 21 C -0.16 -2.19 10.00 -39.42 -0.39 -2.58 16 22 C -0.09 -1.28 10.07 -39.44 -0.40 -1.68 16 23 C 0.06 1.08 7.26 -83.80 -0.61 0.47 16 24 N -0.59 -9.89 6.20 -7.26 -0.04 -9.94 16 25 H 0.41 5.72 8.96 -40.82 -0.37 5.36 16 26 H 0.29 5.94 8.29 -40.82 -0.34 5.60 16 27 H 0.13 3.04 6.27 -52.49 -0.33 2.71 16 28 H 0.12 2.33 8.06 -52.49 -0.42 1.91 16 29 H 0.12 2.18 8.06 -52.49 -0.42 1.76 16 30 H 0.15 3.12 7.33 -52.49 -0.38 2.74 16 31 H 0.13 1.97 8.06 -52.49 -0.42 1.55 16 32 H 0.13 1.44 8.06 -52.48 -0.42 1.01 16 33 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 LS Contribution 294.56 15.07 4.44 4.44 Total: -1.00 -25.79 294.56 -8.73 -34.52 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: -2.67 Total: 12.19 kcal Atomic # 6 Polarization: -14.47 SS G_CDS: -5.93 Total: -20.40 kcal Atomic # 7 Polarization: -40.63 SS G_CDS: 0.43 Total: -40.21 kcal Atomic # 9 Polarization: -2.35 SS G_CDS: 0.04 Total: -2.31 kcal Atomic # 14 Polarization: 16.80 SS G_CDS: -5.03 Total: 11.77 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -25.79 -8.73 -34.52 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245575251.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.909 kcal (2) G-P(sol) polarization free energy of solvation -25.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds