Wall clock time and date at job start Tue Mar 31 2020 06:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30838 * 1 3 3 Si 1.86799 * 120.00334 * 2 1 4 4 H 1.48500 * 109.47053 * 240.00031 * 3 2 1 5 5 H 1.48506 * 109.46938 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47070 * 120.00132 * 3 2 1 7 7 C 1.39931 * 119.99471 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99610 * 197.55331 * 7 2 1 9 9 C 1.41441 * 120.00067 * 17.55440 * 7 2 1 10 10 C 1.40837 * 120.59624 * 203.52580 * 9 7 2 11 11 N 1.31507 * 120.71442 * 179.97438 * 10 9 7 12 12 C 1.31906 * 122.14526 * 359.76986 * 11 10 9 13 13 C 1.39879 * 121.11975 * 0.49903 * 12 11 10 14 14 C 1.47919 * 120.43007 * 179.76836 * 13 12 11 15 15 C 1.35599 * 125.21812 * 359.71786 * 14 13 12 16 16 C 1.46194 * 106.95396 * 179.97438 * 15 14 13 17 17 C 1.39842 * 133.76344 * 180.02562 * 16 15 14 18 18 C 1.37753 * 119.63232 * 179.97438 * 17 16 15 19 19 F 1.35101 * 119.83234 * 179.97438 * 18 17 16 20 20 C 1.39054 * 120.33479 * 0.27862 * 18 17 16 21 21 C 1.37734 * 120.67068 * 359.45097 * 20 18 17 22 22 C 1.39086 * 119.98889 * 0.53107 * 21 20 18 23 23 N 1.37560 * 125.21510 * 179.69969 * 14 13 12 24 24 H 0.96994 * 125.10402 * 0.04956 * 23 14 13 25 25 C 1.39393 * 119.13612 * 359.49098 * 13 12 11 26 26 H 0.97007 * 119.99354 * 359.97438 * 1 2 3 27 27 H 1.07997 * 119.64002 * 359.97438 * 10 9 7 28 28 H 1.07997 * 119.44206 * 180.26461 * 12 11 10 29 29 H 1.08001 * 126.52059 * 359.97438 * 15 14 13 30 30 H 1.08007 * 120.18295 * 359.97438 * 17 16 15 31 31 H 1.08000 * 119.65704 * 179.71858 * 20 18 17 32 32 H 1.08000 * 120.00621 * 180.30207 * 21 20 18 33 33 H 1.08001 * 120.96120 * 180.27328 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 3.0962 1.6963 -1.2125 5 1 1.2775 2.7465 -0.0006 6 1 3.0962 1.6963 1.2125 7 6 2.0079 -1.2119 0.0005 8 1 3.0502 -1.2336 0.2826 9 6 1.3500 -2.4084 -0.3684 10 6 1.8303 -3.6563 0.0739 11 7 1.2202 -4.7701 -0.2672 12 6 0.1411 -4.7753 -1.0258 13 6 -0.4038 -3.5838 -1.5159 14 6 -1.6115 -3.6077 -2.3695 15 6 -2.2777 -4.7255 -2.7507 16 6 -3.4002 -4.2908 -3.5804 17 6 -4.4254 -4.9651 -4.2511 18 6 -5.3572 -4.2475 -4.9683 19 9 -6.3491 -4.8949 -5.6181 20 6 -5.2784 -2.8607 -5.0319 21 6 -4.2774 -2.1828 -4.3720 22 6 -3.3259 -2.8866 -3.6415 23 7 -2.2313 -2.4992 -2.8982 24 1 -1.9415 -1.5828 -2.7678 25 6 0.2028 -2.3733 -1.1845 26 1 -0.4849 0.8402 0.0004 27 1 2.7093 -3.6988 0.7001 28 1 -0.3276 -5.7156 -1.2758 29 1 -2.0269 -5.7433 -2.4908 30 1 -4.4863 -6.0426 -4.2069 31 1 -6.0122 -2.3093 -5.6011 32 1 -4.2293 -1.1052 -4.4247 33 1 -0.1956 -1.4357 -1.5430 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245576016.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:44 Heat of formation + Delta-G solvation = 24.114052 kcal Electronic energy + Delta-G solvation = -20149.370548 eV Core-core repulsion = 16860.764523 eV Total energy + Delta-G solvation = -3288.606026 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -48.66236 -40.97304 -38.44771 -36.41047 -34.31268 -31.97048 -31.35656 -30.53904 -28.78637 -27.73285 -25.78272 -23.31468 -22.27475 -21.70379 -21.03314 -19.87892 -18.04763 -17.19323 -17.00944 -16.02115 -15.70696 -15.41825 -15.35083 -14.80463 -14.50038 -14.16242 -13.88689 -13.37051 -13.13941 -12.94351 -12.59345 -12.45753 -12.40742 -11.86072 -11.69832 -11.51017 -11.19299 -11.13487 -10.77730 -10.75823 -10.11727 -9.72623 -9.58023 -8.86357 -8.36755 -8.06254 -7.69587 -7.20131 -7.03004 -4.72090 0.99770 1.54298 2.10645 2.59897 2.88903 2.90903 3.02233 3.32147 3.42492 3.68517 3.86532 4.39428 4.41513 4.73384 4.99884 5.16432 5.36541 5.42044 5.49785 5.61196 5.84404 5.86596 6.05915 6.16783 6.26225 6.28927 6.37160 6.45281 6.52231 6.83836 6.87260 6.92480 7.05094 7.26257 7.46122 7.56740 7.63881 7.77573 8.16889 8.42593 8.45861 9.38608 9.83195 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.022048 B = 0.004262 C = 0.003608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.669222 B = 6567.808420 C = 7759.509549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.075 3.925 3 Si 0.914 3.086 4 H -0.261 1.261 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.447 4.447 8 H 0.086 0.914 9 C 0.062 3.938 10 C -0.008 4.008 11 N -0.466 5.466 12 C -0.007 4.007 13 C -0.083 4.083 14 C 0.179 3.821 15 C -0.215 4.215 16 C -0.075 4.075 17 C -0.111 4.111 18 C 0.062 3.938 19 F -0.148 7.148 20 C -0.143 4.143 21 C -0.097 4.097 22 C 0.086 3.914 23 N -0.585 5.585 24 H 0.420 0.580 25 C -0.122 4.122 26 H 0.285 0.715 27 H 0.131 0.869 28 H 0.129 0.871 29 H 0.150 0.850 30 H 0.132 0.868 31 H 0.133 0.867 32 H 0.127 0.873 33 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.645 -0.240 -6.762 9.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.144 4.144 3 Si 0.738 3.262 4 H -0.186 1.186 5 H -0.201 1.201 6 H -0.186 1.186 7 C -0.477 4.477 8 H 0.104 0.896 9 C 0.058 3.942 10 C -0.169 4.169 11 N -0.172 5.172 12 C -0.165 4.165 13 C -0.087 4.087 14 C 0.070 3.930 15 C -0.239 4.239 16 C -0.080 4.080 17 C -0.130 4.130 18 C 0.042 3.958 19 F -0.127 7.127 20 C -0.163 4.163 21 C -0.118 4.118 22 C -0.022 4.022 23 N -0.187 5.187 24 H 0.258 0.742 25 C -0.148 4.148 26 H 0.096 0.904 27 H 0.148 0.852 28 H 0.146 0.854 29 H 0.168 0.832 30 H 0.150 0.850 31 H 0.151 0.849 32 H 0.145 0.855 33 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -6.509 -0.773 -6.442 9.191 hybrid contribution -0.130 2.069 -0.272 2.091 sum -6.640 1.297 -6.714 9.531 Atomic orbital electron populations 1.69772 1.07775 1.29923 1.34283 1.25993 0.94826 1.01792 0.91778 0.86244 0.80147 0.79442 0.80355 1.18579 1.20146 1.18604 1.19571 0.98341 0.90715 1.39058 0.89554 1.18412 0.91954 0.93875 0.89952 1.22649 1.02316 0.87910 1.04029 1.67011 1.07599 1.31766 1.10860 1.21739 0.96411 0.95083 1.03273 1.18949 0.93722 0.96255 0.99733 1.19054 0.93509 0.85253 0.95230 1.21556 0.97697 0.97925 1.06702 1.18890 0.96783 0.91776 1.00547 1.20372 0.94056 1.00026 0.98548 1.17238 0.89129 0.90353 0.99123 1.91447 1.59708 1.81815 1.79760 1.20614 1.00343 0.92283 1.03054 1.19811 0.93999 0.99308 0.98654 1.18257 0.91362 0.94031 0.98533 1.41993 1.23752 1.09248 1.43739 0.74224 1.21708 0.98404 0.95481 0.99157 0.90380 0.85189 0.85395 0.83245 0.84983 0.84937 0.85476 0.85547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -18.23 10.92 55.55 0.61 -17.62 16 2 C 0.07 1.68 5.18 -17.34 -0.09 1.59 16 3 Si 0.91 16.82 29.59 -169.99 -5.03 11.79 16 4 H -0.26 -4.80 7.11 56.52 0.40 -4.40 16 5 H -0.28 -4.98 7.11 56.52 0.40 -4.58 16 6 H -0.26 -4.79 7.11 56.52 0.40 -4.39 16 7 C -0.45 -10.67 9.08 -37.73 -0.34 -11.01 16 8 H 0.09 1.95 7.90 -52.49 -0.41 1.53 16 9 C 0.06 1.52 5.59 -106.71 -0.60 0.93 16 10 C -0.01 -0.18 10.96 -16.71 -0.18 -0.36 16 11 N -0.47 -10.80 10.32 -12.23 -0.13 -10.93 16 12 C -0.01 -0.15 10.71 -16.91 -0.18 -0.33 16 13 C -0.08 -1.79 5.88 -104.89 -0.62 -2.41 16 14 C 0.18 3.37 6.87 -82.28 -0.57 2.81 16 15 C -0.22 -3.69 10.42 -37.33 -0.39 -4.08 16 16 C -0.07 -1.21 6.35 -105.16 -0.67 -1.88 16 17 C -0.11 -1.60 10.08 -39.16 -0.39 -1.99 16 18 C 0.06 0.86 7.29 -39.46 -0.29 0.57 16 19 F -0.15 -2.05 17.26 2.25 0.04 -2.01 16 20 C -0.14 -1.81 9.99 -39.46 -0.39 -2.20 16 21 C -0.10 -1.28 10.06 -39.45 -0.40 -1.68 16 22 C 0.09 1.37 7.26 -83.89 -0.61 0.76 16 23 N -0.58 -9.93 5.99 -7.27 -0.04 -9.98 16 24 H 0.42 6.68 8.02 -40.82 -0.33 6.36 16 25 C -0.12 -2.83 8.45 -38.17 -0.32 -3.15 16 26 H 0.29 5.96 8.30 -40.82 -0.34 5.62 16 27 H 0.13 2.80 8.06 -52.49 -0.42 2.38 16 28 H 0.13 2.42 6.90 -52.49 -0.36 2.06 16 29 H 0.15 2.28 7.18 -52.49 -0.38 1.90 16 30 H 0.13 1.65 8.06 -52.48 -0.42 1.23 16 31 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 32 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 33 H 0.13 2.90 5.29 -52.49 -0.28 2.63 16 LS Contribution 295.40 15.07 4.45 4.45 Total: -1.00 -25.83 295.40 -8.73 -34.55 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -2.58 Total: 12.18 kcal Atomic # 6 Polarization: -16.39 SS G_CDS: -6.04 Total: -22.43 kcal Atomic # 7 Polarization: -38.97 SS G_CDS: 0.44 Total: -38.53 kcal Atomic # 9 Polarization: -2.05 SS G_CDS: 0.04 Total: -2.01 kcal Atomic # 14 Polarization: 16.82 SS G_CDS: -5.03 Total: 11.79 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -25.83 -8.73 -34.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245576016.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.667 kcal (2) G-P(sol) polarization free energy of solvation -25.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds