Wall clock time and date at job start Tue Mar 31 2020 06:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30760 * 1 3 3 Si 1.86801 * 119.99606 * 2 1 4 4 H 1.48511 * 109.46818 * 239.99670 * 3 2 1 5 5 H 1.48500 * 109.47556 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47151 * 120.00337 * 3 2 1 7 7 C 1.40035 * 119.99925 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99479 * 180.02562 * 7 2 1 9 9 C 1.40745 * 120.00486 * 0.02562 * 7 2 1 10 10 C 1.41005 * 119.65540 * 179.97438 * 9 7 2 11 11 C 1.36452 * 119.29660 * 180.02562 * 10 9 7 12 12 C 1.40655 * 118.58616 * 0.02562 * 11 10 9 13 13 C 1.47138 * 120.37409 * 179.97438 * 12 11 10 14 14 C 1.36282 * 125.41916 * 179.97438 * 13 12 11 15 15 C 1.41539 * 107.74216 * 179.97438 * 14 13 12 16 16 C 1.40176 * 133.32690 * 180.36944 * 15 14 13 17 17 C 1.37652 * 119.67758 * 180.15206 * 16 15 14 18 18 F 1.35104 * 119.79473 * 179.73015 * 17 16 15 19 19 C 1.39096 * 120.40504 * 359.45917 * 17 16 15 20 20 C 1.37802 * 120.63004 * 0.24883 * 19 17 16 21 21 C 1.39000 * 119.99679 * 0.02890 * 20 19 17 22 22 N 1.37814 * 125.42255 * 359.97438 * 13 12 11 23 23 H 0.97004 * 125.61199 * 0.03796 * 22 13 12 24 24 C 1.40433 * 119.24986 * 0.24939 * 12 11 10 25 25 N 1.31081 * 120.64108 * 359.47195 * 24 12 11 26 26 H 0.96992 * 120.00069 * 0.02562 * 1 2 3 27 27 H 1.08001 * 120.35143 * 0.02562 * 10 9 7 28 28 H 1.07993 * 120.70376 * 180.02562 * 11 10 9 29 29 H 1.07994 * 126.12958 * 359.97291 * 14 13 12 30 30 H 1.08000 * 120.15769 * 359.88611 * 16 15 14 31 31 H 1.08000 * 119.68380 * 180.27219 * 19 17 16 32 32 H 1.07996 * 120.00377 * 180.02562 * 20 19 17 33 33 H 1.08002 * 119.67239 * 179.72905 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2415 1.6178 0.0000 4 1 3.0953 1.6964 -1.2126 5 1 1.2765 2.7465 -0.0006 6 1 3.0953 1.6965 1.2125 7 6 2.0078 -1.2127 0.0005 8 1 3.0878 -1.2127 0.0010 9 6 1.3041 -2.4317 0.0005 10 6 2.0166 -3.6485 0.0005 11 6 1.3270 -4.8260 0.0000 12 6 -0.0789 -4.7826 -0.0011 13 6 -0.8617 -6.0284 -0.0022 14 6 -2.2223 -6.1063 -0.0029 15 6 -2.5758 -7.4768 -0.0045 16 6 -3.8035 -8.1535 -0.0123 17 6 -3.8231 -9.5298 -0.0086 18 9 -5.0050 -10.1844 -0.0106 19 6 -2.6336 -10.2509 -0.0085 20 6 -1.4186 -9.6008 -0.0070 21 6 -1.3737 -8.2115 -0.0049 22 7 -0.3358 -7.3023 -0.0029 23 1 0.6087 -7.5234 -0.0021 24 6 -0.7269 -3.5367 -0.0069 25 7 -0.0347 -2.4236 -0.0009 26 1 -0.4850 0.8400 -0.0004 27 1 3.0966 -3.6486 0.0010 28 1 1.8496 -5.7710 0.0004 29 1 -2.9078 -5.2719 -0.0021 30 1 -4.7294 -7.5975 -0.0169 31 1 -2.6626 -11.3305 -0.0101 32 1 -0.5012 -10.1707 -0.0073 33 1 -1.8061 -3.4954 -0.0122 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245577424.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:48 Heat of formation + Delta-G solvation = 33.663241 kcal Electronic energy + Delta-G solvation = -19843.014920 eV Core-core repulsion = 16554.822978 eV Total energy + Delta-G solvation = -3288.191942 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -48.58238 -40.97100 -38.34211 -36.29063 -33.98103 -31.96407 -31.15027 -30.67545 -28.71317 -28.16489 -25.75305 -22.82022 -22.29597 -21.76115 -20.93413 -19.79577 -17.87520 -17.66043 -16.95350 -16.00832 -15.73932 -15.33454 -15.01762 -14.40094 -14.33685 -14.07777 -13.85682 -13.24213 -13.06975 -12.83401 -12.66876 -12.45593 -12.25545 -12.07575 -11.44403 -11.29422 -11.09252 -11.02320 -10.72793 -10.64763 -10.25290 -9.79005 -9.55081 -8.69534 -8.31261 -7.88270 -7.65830 -7.03036 -6.74451 -4.80406 1.10786 1.65549 2.24275 2.80039 2.91122 2.92382 2.92728 3.39088 3.54381 3.69183 4.01410 4.50445 4.54212 4.83703 5.12065 5.40397 5.46843 5.61783 5.63719 5.72957 5.78972 5.94249 5.99976 6.17961 6.31368 6.40875 6.45239 6.52678 6.60760 6.76651 6.93085 7.03844 7.13323 7.26362 7.39073 7.54763 7.70492 7.83947 7.92198 8.27676 8.57143 9.79209 9.94925 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.048656 B = 0.003148 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.327180 B = 8892.211529 C = 9457.693977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.691 5.691 2 C 0.060 3.940 3 Si 0.915 3.085 4 H -0.262 1.262 5 H -0.273 1.273 6 H -0.262 1.262 7 C -0.395 4.395 8 H 0.090 0.910 9 C 0.249 3.751 10 C -0.267 4.267 11 C -0.038 4.038 12 C -0.279 4.279 13 C 0.220 3.780 14 C -0.258 4.258 15 C -0.050 4.050 16 C -0.128 4.128 17 C 0.069 3.931 18 F -0.151 7.151 19 C -0.160 4.160 20 C -0.092 4.092 21 C 0.063 3.937 22 N -0.594 5.594 23 H 0.413 0.587 24 C 0.180 3.820 25 N -0.487 5.487 26 H 0.281 0.719 27 H 0.103 0.897 28 H 0.091 0.909 29 H 0.142 0.858 30 H 0.130 0.870 31 H 0.129 0.871 32 H 0.122 0.878 33 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.114 -9.439 -0.022 9.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.309 5.309 2 C -0.169 4.169 3 Si 0.738 3.262 4 H -0.186 1.186 5 H -0.198 1.198 6 H -0.186 1.186 7 C -0.424 4.424 8 H 0.108 0.892 9 C 0.127 3.873 10 C -0.289 4.289 11 C -0.061 4.061 12 C -0.286 4.286 13 C 0.110 3.890 14 C -0.281 4.281 15 C -0.055 4.055 16 C -0.147 4.147 17 C 0.048 3.952 18 F -0.130 7.130 19 C -0.180 4.180 20 C -0.113 4.113 21 C -0.044 4.044 22 N -0.198 5.198 23 H 0.250 0.750 24 C 0.008 3.992 25 N -0.199 5.199 26 H 0.093 0.907 27 H 0.121 0.879 28 H 0.109 0.891 29 H 0.160 0.840 30 H 0.147 0.853 31 H 0.147 0.853 32 H 0.140 0.860 33 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -1.573 -8.456 -0.019 8.602 hybrid contribution 1.112 -0.495 0.000 1.217 sum -0.461 -8.952 -0.019 8.964 Atomic orbital electron populations 1.70112 1.07423 1.28924 1.24477 1.26242 0.95113 1.01719 0.93825 0.86243 0.80122 0.79602 0.80229 1.18594 1.19798 1.18589 1.19803 0.94858 0.89660 1.38069 0.89189 1.18673 0.88644 0.91917 0.88028 1.21366 0.98980 0.93403 1.15160 1.20496 0.92804 0.96659 0.96145 1.18461 0.92572 0.90618 1.26997 1.19097 0.91867 0.82974 0.95050 1.20497 0.93319 0.94451 1.19819 1.17914 0.91189 0.93870 1.02513 1.20422 0.97736 0.91839 1.04701 1.17244 0.80647 0.90036 1.07240 1.91437 1.45448 1.81481 1.94591 1.20531 0.90518 0.99674 1.07289 1.19727 0.97607 0.90281 1.03666 1.18267 0.87897 0.90925 1.07306 1.42050 1.07490 1.04726 1.65514 0.74984 1.22753 0.98942 0.86974 0.90503 1.68869 1.06929 1.25939 1.18121 0.90749 0.87921 0.89095 0.83989 0.85255 0.85290 0.85959 0.85364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -16.78 11.43 55.55 0.64 -16.14 16 2 C 0.06 1.37 5.50 -17.33 -0.10 1.28 16 3 Si 0.91 16.73 29.56 -169.99 -5.02 11.71 16 4 H -0.26 -4.73 7.11 56.52 0.40 -4.32 16 5 H -0.27 -4.90 7.11 56.52 0.40 -4.49 16 6 H -0.26 -4.72 7.11 56.52 0.40 -4.32 16 7 C -0.39 -9.55 9.10 -37.96 -0.35 -9.89 16 8 H 0.09 1.99 7.85 -52.48 -0.41 1.58 16 9 C 0.25 6.24 6.55 -84.98 -0.56 5.68 16 10 C -0.27 -5.92 9.76 -39.18 -0.38 -6.30 16 11 C -0.04 -0.76 9.74 -39.31 -0.38 -1.15 16 12 C -0.28 -5.79 5.91 -104.55 -0.62 -6.41 16 13 C 0.22 4.06 6.88 -82.27 -0.57 3.49 16 14 C -0.26 -4.61 10.22 -39.03 -0.40 -5.01 16 15 C -0.05 -0.84 6.16 -106.91 -0.66 -1.50 16 16 C -0.13 -1.96 10.09 -39.07 -0.39 -2.35 16 17 C 0.07 1.00 7.28 -39.48 -0.29 0.72 16 18 F -0.15 -2.19 17.26 2.25 0.04 -2.15 16 19 C -0.16 -2.09 10.00 -39.42 -0.39 -2.49 16 20 C -0.09 -1.21 10.06 -39.46 -0.40 -1.61 16 21 C 0.06 0.99 7.25 -83.81 -0.61 0.38 16 22 N -0.59 -9.40 6.06 -7.25 -0.04 -9.44 16 23 H 0.41 5.45 8.05 -40.82 -0.33 5.12 16 24 C 0.18 4.06 10.73 -17.05 -0.18 3.87 16 25 N -0.49 -12.40 7.82 -10.79 -0.08 -12.49 16 26 H 0.28 6.14 8.29 -40.82 -0.34 5.80 16 27 H 0.10 2.07 8.06 -52.49 -0.42 1.64 16 28 H 0.09 1.53 7.18 -52.49 -0.38 1.15 16 29 H 0.14 2.37 7.18 -52.49 -0.38 2.00 16 30 H 0.13 1.77 8.06 -52.49 -0.42 1.35 16 31 H 0.13 1.36 8.06 -52.49 -0.42 0.93 16 32 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 33 H 0.13 2.61 6.92 -52.49 -0.36 2.25 16 LS Contribution 296.38 15.07 4.47 4.47 Total: -1.00 -26.86 296.38 -8.96 -35.82 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -2.68 Total: 9.51 kcal Atomic # 6 Polarization: -15.01 SS G_CDS: -6.27 Total: -21.28 kcal Atomic # 7 Polarization: -38.58 SS G_CDS: 0.51 Total: -38.08 kcal Atomic # 9 Polarization: -2.19 SS G_CDS: 0.04 Total: -2.15 kcal Atomic # 14 Polarization: 16.73 SS G_CDS: -5.02 Total: 11.71 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -26.86 -8.96 -35.82 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245577424.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.483 kcal (2) G-P(sol) polarization free energy of solvation -26.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds