Wall clock time and date at job start Tue Mar 31 2020 06:41:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30737 * 1 3 3 Si 1.86800 * 120.00425 * 2 1 4 4 H 1.48506 * 109.46923 * 240.00055 * 3 2 1 5 5 H 1.48499 * 109.46856 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47092 * 120.00100 * 3 2 1 7 7 C 1.40039 * 119.99497 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99648 * 180.02562 * 7 2 1 9 9 C 1.41426 * 120.00217 * 359.97438 * 7 2 1 10 10 C 1.40419 * 119.76886 * 180.25210 * 9 7 2 11 11 C 1.39576 * 118.80483 * 180.24683 * 10 9 7 12 12 C 1.47836 * 120.84717 * 179.78582 * 11 10 9 13 13 C 1.35619 * 125.23078 * 359.69307 * 12 11 10 14 14 C 1.46183 * 106.94559 * 180.02562 * 13 12 11 15 15 C 1.39828 * 133.77930 * 179.97438 * 14 13 12 16 16 C 1.36550 * 119.80506 * 179.70774 * 15 14 13 17 17 C 1.39072 * 120.50537 * 0.59656 * 16 15 14 18 18 F 1.35104 * 119.67747 * 179.69181 * 17 16 15 19 19 C 1.37964 * 120.64015 * 359.41863 * 17 16 15 20 20 C 1.39122 * 119.79069 * 0.27817 * 19 17 16 21 21 N 1.37693 * 133.23273 * 180.02562 * 20 19 17 22 22 H 0.97002 * 125.11433 * 359.97151 * 21 20 19 23 23 C 1.40267 * 118.30564 * 359.51383 * 11 10 9 24 24 C 1.38399 * 119.40453 * 0.24974 * 23 11 10 25 25 N 1.31525 * 121.17521 * 359.97438 * 24 23 11 26 26 H 0.96995 * 119.99629 * 0.02562 * 1 2 3 27 27 H 1.08003 * 120.60283 * 0.02562 * 10 9 7 28 28 H 1.08004 * 126.52521 * 0.04975 * 13 12 11 29 29 H 1.08007 * 120.09544 * 0.04785 * 15 14 13 30 30 H 1.07999 * 119.74561 * 180.28834 * 16 15 14 31 31 H 1.07996 * 120.10566 * 180.24819 * 19 17 16 32 32 H 1.08004 * 120.29173 * 180.22247 * 23 11 10 33 33 H 1.08005 * 119.41544 * 179.97438 * 24 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 3.0952 1.6962 -1.2126 5 1 1.2765 2.7464 -0.0006 6 1 3.0952 1.6962 1.2125 7 6 2.0075 -1.2128 -0.0005 8 1 3.0875 -1.2129 -0.0001 9 6 1.3003 -2.4376 -0.0005 10 6 2.0072 -3.6508 0.0043 11 6 1.2890 -4.8477 -0.0011 12 6 1.9873 -6.1507 -0.0011 13 6 3.3333 -6.3170 -0.0021 14 6 3.5847 -7.7571 -0.0023 15 6 4.7455 -8.5365 -0.0036 16 6 4.6486 -9.8985 0.0026 17 6 3.4033 -10.5177 -0.0022 18 9 3.3269 -11.8665 -0.0023 19 6 2.2452 -9.7678 -0.0013 20 6 2.3213 -8.3786 -0.0014 21 7 1.3711 -7.3821 -0.0002 22 1 0.4118 -7.5258 0.0006 23 6 -0.1121 -4.7826 -0.0006 24 6 -0.7349 -3.5466 -0.0001 25 7 -0.0364 -2.4322 0.0004 26 1 -0.4849 0.8400 -0.0004 27 1 3.0872 -3.6579 0.0084 28 1 4.0777 -5.5345 -0.0022 29 1 5.7161 -8.0626 -0.0040 30 1 5.5459 -10.4996 0.0063 31 1 1.2827 -10.2576 -0.0011 32 1 -0.6996 -5.6889 -0.0010 33 1 -1.8138 -3.4963 -0.0002 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245590433.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:32 Heat of formation + Delta-G solvation = 37.486512 kcal Electronic energy + Delta-G solvation = -19867.097559 eV Core-core repulsion = 16579.071407 eV Total energy + Delta-G solvation = -3288.026152 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -48.84743 -41.07407 -38.25751 -36.55561 -33.75884 -32.16876 -31.11550 -30.23734 -29.32639 -27.60553 -25.77798 -23.48331 -22.14789 -21.86777 -20.85114 -19.98423 -18.29961 -17.57362 -16.41066 -16.11198 -15.58940 -15.41228 -15.16362 -14.51900 -14.33138 -14.23464 -14.05029 -13.75647 -13.22929 -13.06515 -12.65756 -12.37186 -12.33736 -11.66530 -11.40894 -11.24954 -11.19828 -10.99879 -10.90815 -10.56557 -10.05853 -9.86347 -9.45042 -8.75073 -8.02477 -7.83738 -7.74227 -7.22483 -6.54041 -4.67741 0.91961 1.50314 2.18659 2.62745 3.02421 3.04090 3.08860 3.12462 3.52897 3.81546 3.85576 4.39609 4.63800 4.66694 4.90035 5.06243 5.27305 5.35123 5.54783 5.75187 5.77924 5.92104 5.98464 6.11522 6.15476 6.16446 6.40950 6.47398 6.59937 6.82634 6.86031 7.01841 7.13111 7.16708 7.30063 7.48256 7.63167 7.83680 8.07710 8.49148 8.74664 9.95125 10.17960 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.038175 B = 0.003331 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.295194 B = 8402.687662 C = 9126.138654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.712 5.712 2 C 0.067 3.933 3 Si 0.910 3.090 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.424 4.424 8 H 0.087 0.913 9 C 0.254 3.746 10 C -0.235 4.235 11 C 0.010 3.990 12 C 0.158 3.842 13 C -0.196 4.196 14 C -0.111 4.111 15 C -0.042 4.042 16 C -0.183 4.183 17 C 0.106 3.894 18 F -0.144 7.144 19 C -0.166 4.166 20 C 0.119 3.881 21 N -0.586 5.586 22 H 0.416 0.584 23 C -0.314 4.314 24 C 0.131 3.869 25 N -0.482 5.482 26 H 0.275 0.725 27 H 0.108 0.892 28 H 0.152 0.848 29 H 0.132 0.868 30 H 0.131 0.869 31 H 0.129 0.871 32 H 0.090 0.910 33 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.666 -11.609 0.000 12.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.332 5.332 2 C -0.159 4.159 3 Si 0.734 3.266 4 H -0.188 1.188 5 H -0.201 1.201 6 H -0.188 1.188 7 C -0.455 4.455 8 H 0.105 0.895 9 C 0.130 3.870 10 C -0.259 4.259 11 C 0.003 3.997 12 C 0.051 3.949 13 C -0.220 4.220 14 C -0.116 4.116 15 C -0.061 4.061 16 C -0.203 4.203 17 C 0.086 3.914 18 F -0.123 7.123 19 C -0.188 4.188 20 C 0.010 3.990 21 N -0.188 5.188 22 H 0.254 0.746 23 C -0.338 4.338 24 C -0.034 4.034 25 N -0.195 5.195 26 H 0.087 0.913 27 H 0.126 0.874 28 H 0.169 0.831 29 H 0.150 0.850 30 H 0.149 0.851 31 H 0.147 0.853 32 H 0.108 0.892 33 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 3.929 -10.656 0.002 11.358 hybrid contribution 0.133 -0.579 -0.002 0.594 sum 4.062 -11.235 0.000 11.947 Atomic orbital electron populations 1.70111 1.07274 1.28191 1.27656 1.26098 0.94957 1.01254 0.93573 0.86341 0.80087 0.80154 0.80045 1.18788 1.20143 1.18784 1.19654 0.94424 0.89293 1.42156 0.89530 1.18531 0.88304 0.91584 0.88616 1.21809 0.98861 0.91824 1.13381 1.17985 0.92916 0.88504 1.00314 1.19155 0.91412 0.84231 1.00110 1.21702 0.94070 0.93295 1.12897 1.19262 0.92054 0.93728 1.06577 1.20136 0.97354 0.91998 0.96586 1.20514 0.96034 0.95234 1.08519 1.17104 0.93754 0.76338 1.04206 1.91465 1.97245 1.29383 1.94183 1.19733 0.98136 0.90543 1.10341 1.17778 0.89076 0.89071 1.03065 1.41890 1.08251 1.03927 1.64774 0.74598 1.21175 0.93033 0.98050 1.21560 1.22405 0.98901 0.88405 0.93711 1.68748 1.07231 1.26736 1.16737 0.91336 0.87361 0.83064 0.85009 0.85060 0.85274 0.89216 0.86118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -18.20 11.46 55.55 0.64 -17.57 16 2 C 0.07 1.64 5.50 -17.34 -0.10 1.54 16 3 Si 0.91 17.73 29.56 -169.99 -5.02 12.71 16 4 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 5 H -0.28 -5.28 7.11 56.52 0.40 -4.88 16 6 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 7 C -0.42 -10.77 9.14 -37.69 -0.34 -11.12 16 8 H 0.09 2.02 7.85 -52.48 -0.41 1.61 16 9 C 0.25 6.59 6.55 -85.03 -0.56 6.03 16 10 C -0.23 -5.40 9.35 -38.26 -0.36 -5.76 16 11 C 0.01 0.20 5.90 -104.71 -0.62 -0.42 16 12 C 0.16 2.86 6.89 -82.24 -0.57 2.29 16 13 C -0.20 -3.29 10.44 -37.33 -0.39 -3.68 16 14 C -0.11 -1.70 6.36 -105.15 -0.67 -2.37 16 15 C -0.04 -0.53 10.05 -39.60 -0.40 -0.93 16 16 C -0.18 -2.18 9.95 -39.88 -0.40 -2.58 16 17 C 0.11 1.38 7.28 -39.37 -0.29 1.09 16 18 F -0.14 -1.86 17.25 2.25 0.04 -1.82 16 19 C -0.17 -2.19 10.05 -39.35 -0.40 -2.59 16 20 C 0.12 1.79 7.26 -83.94 -0.61 1.18 16 21 N -0.59 -9.06 5.99 -7.28 -0.04 -9.11 16 22 H 0.42 5.50 8.05 -40.82 -0.33 5.17 16 23 C -0.31 -6.55 9.79 -38.76 -0.38 -6.93 16 24 C 0.13 3.01 11.16 -17.62 -0.20 2.81 16 25 N -0.48 -12.69 7.85 -11.23 -0.09 -12.77 16 26 H 0.28 6.38 8.29 -40.82 -0.34 6.04 16 27 H 0.11 2.27 7.04 -52.48 -0.37 1.90 16 28 H 0.15 2.35 7.26 -52.48 -0.38 1.97 16 29 H 0.13 1.33 8.06 -52.48 -0.42 0.91 16 30 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 31 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 32 H 0.09 1.58 7.18 -52.48 -0.38 1.20 16 33 H 0.12 2.44 8.06 -52.48 -0.42 2.01 16 LS Contribution 297.00 15.07 4.48 4.48 Total: -1.00 -28.06 297.00 -8.96 -37.02 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -2.69 Total: 8.48 kcal Atomic # 6 Polarization: -15.15 SS G_CDS: -6.26 Total: -21.41 kcal Atomic # 7 Polarization: -39.95 SS G_CDS: 0.50 Total: -39.45 kcal Atomic # 9 Polarization: -1.86 SS G_CDS: 0.04 Total: -1.82 kcal Atomic # 14 Polarization: 17.73 SS G_CDS: -5.02 Total: 12.71 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -28.06 -8.96 -37.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245590433.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.508 kcal (2) G-P(sol) polarization free energy of solvation -28.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds