Wall clock time and date at job start Tue Mar 31 2020 06:42:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30867 * 1 3 3 Si 1.86795 * 120.00115 * 2 1 4 4 H 1.48496 * 109.47071 * 239.99563 * 3 2 1 5 5 H 1.48496 * 109.47124 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47117 * 119.99688 * 3 2 1 7 7 C 1.39900 * 119.99524 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99643 * 162.06893 * 7 2 1 9 9 C 1.41322 * 120.00430 * 342.34605 * 7 2 1 10 10 C 1.40516 * 120.20258 * 335.22114 * 9 7 2 11 11 C 1.38683 * 119.65624 * 179.74264 * 10 9 7 12 12 C 1.48386 * 119.96459 * 180.24824 * 11 10 9 13 13 C 1.41755 * 119.82783 * 0.02562 * 12 11 10 14 14 C 1.35639 * 119.67313 * 179.78790 * 13 12 11 15 15 C 1.41081 * 119.34881 * 0.42744 * 14 13 12 16 16 C 1.37974 * 133.52312 * 179.82751 * 15 14 13 17 17 N 1.33402 * 107.59769 * 179.97438 * 16 15 14 18 18 C 1.30888 * 109.91242 * 359.97438 * 17 16 15 19 19 N 1.35638 * 109.24440 * 0.02562 * 18 17 16 20 20 C 1.35833 * 119.82545 * 180.27880 * 12 11 10 21 21 C 1.39846 * 120.06633 * 0.53040 * 11 10 9 22 22 C 1.38227 * 120.41719 * 359.72400 * 21 11 10 23 23 C 1.38069 * 120.34883 * 0.02562 * 22 21 11 24 24 F 1.35102 * 120.04092 * 180.02562 * 23 22 21 25 25 H 0.97005 * 119.99995 * 0.02562 * 1 2 3 26 26 H 1.08007 * 120.17378 * 359.97438 * 10 9 7 27 27 H 1.07996 * 120.16394 * 0.02562 * 13 12 11 28 28 H 1.08002 * 120.32569 * 180.24257 * 14 13 12 29 29 H 1.07991 * 126.19855 * 0.02562 * 16 15 14 30 30 H 1.07997 * 125.38120 * 179.97438 * 18 17 16 31 31 H 1.08002 * 119.78519 * 359.97438 * 20 12 11 32 32 H 1.07997 * 119.78498 * 179.73852 * 21 11 10 33 33 H 1.08007 * 119.82467 * 179.97438 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 3.0965 1.6963 -1.2124 5 1 1.2777 2.7464 -0.0006 6 1 3.0964 1.6964 1.2125 7 6 2.0081 -1.2116 0.0005 8 1 3.0488 -1.2345 -0.2874 9 6 1.3514 -2.4065 0.3722 10 6 0.2242 -2.3625 1.2101 11 6 -0.4147 -3.5415 1.5634 12 6 -1.6089 -3.5025 2.4433 13 6 -2.0933 -2.2584 2.9198 14 6 -3.1877 -2.2260 3.7204 15 6 -3.8219 -3.4357 4.0738 16 6 -4.9205 -3.7408 4.8508 17 7 -5.0688 -5.0665 4.8367 18 6 -4.1341 -5.6118 4.1003 19 7 -3.3319 -4.6378 3.6027 20 6 -2.2291 -4.6595 2.7921 21 6 0.0688 -4.7677 1.0960 22 6 1.1806 -4.8148 0.2759 23 6 1.8269 -3.6511 -0.0907 24 9 2.9126 -3.7044 -0.8929 25 1 -0.4850 0.8401 -0.0004 26 1 -0.1450 -1.4149 1.5740 27 1 -1.5957 -1.3406 2.6435 28 1 -3.5680 -1.2837 4.0862 29 1 -5.5472 -3.0345 5.3747 30 1 -4.0192 -6.6701 3.9183 31 1 -1.8502 -5.6026 2.4269 32 1 -0.4297 -5.6834 1.3774 33 1 1.5461 -5.7671 -0.0792 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245896840.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:25 Heat of formation + Delta-G solvation = 53.305771 kcal Electronic energy + Delta-G solvation = -20502.208604 eV Core-core repulsion = 17214.868427 eV Total energy + Delta-G solvation = -3287.340178 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -47.41445 -42.44856 -38.35781 -36.53037 -34.04378 -33.15905 -31.62370 -30.04904 -28.32794 -27.62747 -25.53593 -23.60513 -22.68091 -21.54398 -21.19068 -20.22798 -17.62846 -17.53248 -16.72178 -16.02323 -15.54948 -15.41039 -15.26824 -14.52820 -14.39094 -14.18745 -14.16477 -13.50160 -13.30521 -12.85608 -12.20002 -12.16893 -12.12045 -11.80118 -11.58035 -11.29578 -11.13371 -10.96061 -10.65131 -10.47506 -10.28724 -10.07975 -9.70519 -9.49878 -9.08880 -7.85353 -7.56932 -7.12293 -6.94228 -4.64243 0.97997 1.37312 2.48879 2.58066 2.85957 2.93962 2.95850 3.01321 3.27778 3.73994 3.76454 4.37424 4.68319 4.75596 4.92427 5.13698 5.20330 5.25434 5.28557 5.62604 5.68570 5.84742 5.91672 6.08791 6.21807 6.30778 6.46095 6.66089 6.70350 6.84549 6.88834 6.96890 7.18110 7.30153 7.41703 7.59760 7.68794 7.82398 8.03713 8.25472 8.49146 8.55953 9.88684 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.020084 B = 0.004971 C = 0.004031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.819628 B = 5631.384167 C = 6944.208279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.077 3.923 3 Si 0.914 3.086 4 H -0.263 1.263 5 H -0.275 1.275 6 H -0.261 1.261 7 C -0.449 4.449 8 H 0.086 0.914 9 C 0.084 3.916 10 C -0.119 4.119 11 C -0.052 4.052 12 C -0.014 4.014 13 C -0.097 4.097 14 C -0.090 4.090 15 C 0.004 3.996 16 C -0.039 4.039 17 N -0.460 5.460 18 C 0.122 3.878 19 N -0.356 5.356 20 C 0.020 3.980 21 C -0.208 4.208 22 C -0.119 4.119 23 C -0.021 4.021 24 F -0.161 7.161 25 H 0.287 0.713 26 H 0.135 0.865 27 H 0.146 0.854 28 H 0.144 0.856 29 H 0.175 0.825 30 H 0.206 0.794 31 H 0.166 0.834 32 H 0.100 0.900 33 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.241 -2.307 5.001 6.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C -0.142 4.142 3 Si 0.738 3.262 4 H -0.187 1.187 5 H -0.200 1.200 6 H -0.185 1.185 7 C -0.477 4.477 8 H 0.104 0.896 9 C 0.080 3.920 10 C -0.138 4.138 11 C -0.053 4.053 12 C -0.016 4.016 13 C -0.118 4.118 14 C -0.110 4.110 15 C -0.106 4.106 16 C -0.193 4.193 17 N -0.173 5.173 18 C -0.152 4.152 19 N -0.026 5.026 20 C -0.100 4.100 21 C -0.228 4.228 22 C -0.138 4.138 23 C -0.042 4.042 24 F -0.140 7.140 25 H 0.098 0.902 26 H 0.152 0.848 27 H 0.163 0.837 28 H 0.161 0.839 29 H 0.192 0.808 30 H 0.223 0.777 31 H 0.183 0.817 32 H 0.118 0.882 33 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -5.024 -2.763 5.340 7.835 hybrid contribution 1.154 1.043 -0.748 1.726 sum -3.870 -1.720 4.592 6.247 Atomic orbital electron populations 1.69790 1.07632 1.30051 1.33676 1.25936 0.94828 1.01650 0.91835 0.86241 0.80171 0.79417 0.80376 1.18703 1.20023 1.18502 1.19535 0.98577 0.90819 1.38815 0.89626 1.17535 0.92445 0.91095 0.90883 1.21309 0.97355 0.96407 0.98757 1.18214 0.93941 0.94506 0.98683 1.18561 0.95367 0.91344 0.96367 1.21405 0.95755 0.98556 0.96099 1.20413 0.95865 0.95501 0.99205 1.19777 0.99976 0.86549 1.04290 1.22365 0.99033 0.92194 1.05742 1.69890 1.21737 1.08308 1.17408 1.24832 0.92095 0.95354 1.02920 1.42925 1.19747 1.08554 1.31385 1.21637 0.89324 1.00921 0.98082 1.20139 1.00424 0.95412 1.06777 1.20404 0.97100 0.95930 1.00324 1.17949 0.90608 0.94746 1.00855 1.91288 1.53204 1.97294 1.72187 0.90239 0.84797 0.83654 0.83866 0.80775 0.77726 0.81654 0.88174 0.87658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -18.24 10.96 55.55 0.61 -17.63 16 2 C 0.08 1.76 5.14 -17.34 -0.09 1.67 16 3 Si 0.91 17.27 29.60 -169.99 -5.03 12.24 16 4 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 5 H -0.28 -5.02 7.11 56.52 0.40 -4.62 16 6 H -0.26 -4.89 7.11 56.52 0.40 -4.49 16 7 C -0.45 -11.19 8.78 -37.79 -0.33 -11.52 16 8 H 0.09 2.12 7.73 -52.48 -0.41 1.71 16 9 C 0.08 2.07 5.57 -106.80 -0.60 1.48 16 10 C -0.12 -2.72 8.06 -38.56 -0.31 -3.03 16 11 C -0.05 -1.07 5.87 -104.95 -0.62 -1.68 16 12 C -0.01 -0.24 5.84 -105.24 -0.61 -0.86 16 13 C -0.10 -1.62 9.41 -39.17 -0.37 -1.98 16 14 C -0.09 -1.32 10.10 -39.43 -0.40 -1.72 16 15 C 0.00 0.07 6.80 -84.06 -0.57 -0.50 16 16 C -0.04 -0.57 12.01 -16.97 -0.20 -0.78 16 17 N -0.46 -7.23 11.19 -13.82 -0.15 -7.39 16 18 C 0.12 1.74 12.78 -89.51 -1.14 0.60 16 19 N -0.36 -5.56 2.95 -62.00 -0.18 -5.74 16 20 C 0.02 0.31 10.37 -16.16 -0.17 0.15 16 21 C -0.21 -4.05 9.41 -38.98 -0.37 -4.41 16 22 C -0.12 -2.46 9.99 -39.65 -0.40 -2.86 16 23 C -0.02 -0.50 7.31 -38.58 -0.28 -0.79 16 24 F -0.16 -3.84 16.70 2.25 0.04 -3.80 16 25 H 0.29 6.01 8.30 -40.82 -0.34 5.67 16 26 H 0.13 3.05 4.28 -52.48 -0.22 2.82 16 27 H 0.15 2.43 6.22 -52.49 -0.33 2.10 16 28 H 0.14 1.63 8.06 -52.49 -0.42 1.21 16 29 H 0.18 2.04 8.06 -52.49 -0.42 1.62 16 30 H 0.21 2.12 8.06 -52.49 -0.42 1.70 16 31 H 0.17 2.23 6.06 -52.49 -0.32 1.91 16 32 H 0.10 1.62 6.13 -52.49 -0.32 1.30 16 33 H 0.11 1.91 8.06 -52.48 -0.42 1.49 16 LS Contribution 291.09 15.07 4.39 4.39 Total: -1.00 -27.14 291.09 -9.21 -36.35 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -2.42 Total: 7.81 kcal Atomic # 6 Polarization: -19.78 SS G_CDS: -6.46 Total: -26.23 kcal Atomic # 7 Polarization: -31.03 SS G_CDS: 0.27 Total: -30.76 kcal Atomic # 9 Polarization: -3.84 SS G_CDS: 0.04 Total: -3.80 kcal Atomic # 14 Polarization: 17.27 SS G_CDS: -5.03 Total: 12.24 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -27.14 -9.21 -36.35 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245896840.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.656 kcal (2) G-P(sol) polarization free energy of solvation -27.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds