Wall clock time and date at job start Tue Mar 31 2020 06:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30933 * 1 3 3 Si 1.86797 * 120.00194 * 2 1 4 4 H 1.48498 * 109.47108 * 359.97438 * 3 2 1 5 5 H 1.48496 * 109.47179 * 120.00183 * 3 2 1 6 6 H 1.48502 * 109.47099 * 240.00618 * 3 2 1 7 7 C 1.39813 * 119.99769 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00037 * 206.62679 * 7 2 1 9 9 C 1.40928 * 120.00150 * 26.63322 * 7 2 1 10 10 C 1.40958 * 120.12793 * 25.37906 * 9 7 2 11 11 C 1.36125 * 119.91265 * 180.02562 * 10 9 7 12 12 C 1.40123 * 120.16880 * 0.02562 * 11 10 9 13 13 C 1.47809 * 119.87298 * 179.97438 * 12 11 10 14 14 C 1.41841 * 119.87498 * 359.72985 * 13 12 11 15 15 C 1.35596 * 119.63814 * 179.79078 * 14 13 12 16 16 C 1.41133 * 119.38905 * 0.42283 * 15 14 13 17 17 C 1.37952 * 133.44780 * 179.82466 * 16 15 14 18 18 N 1.33456 * 107.63471 * 179.97438 * 17 16 15 19 19 C 1.30845 * 109.91076 * 0.02562 * 18 17 16 20 20 N 1.35823 * 109.21354 * 359.97438 * 19 18 17 21 21 C 1.36456 * 119.87880 * 179.97438 * 13 12 11 22 22 C 1.39907 * 120.25475 * 359.97438 * 12 11 10 23 23 C 1.36470 * 120.08430 * 359.76230 * 22 12 11 24 24 F 1.35102 * 120.08408 * 180.25325 * 23 22 12 25 25 H 0.96997 * 119.99975 * 185.88834 * 1 2 3 26 26 H 1.08001 * 120.04057 * 0.02580 * 10 9 7 27 27 H 1.08001 * 119.91488 * 179.97438 * 11 10 9 28 28 H 1.08003 * 120.18507 * 0.02562 * 14 13 12 29 29 H 1.07998 * 120.30619 * 180.26674 * 15 14 13 30 30 H 1.08001 * 126.18966 * 0.02562 * 17 16 15 31 31 H 1.08005 * 125.39106 * 179.97438 * 19 18 17 32 32 H 1.08002 * 119.79648 * 359.97438 * 21 13 12 33 33 H 1.07997 * 119.95874 * 180.02562 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3093 0.0000 0.0000 3 14 2.2434 1.6177 0.0000 4 1 1.2784 2.7464 -0.0006 5 1 3.0971 1.6963 1.2124 6 1 3.0970 1.6964 -1.2126 7 6 2.0084 -1.2108 -0.0005 8 1 3.0024 -1.2607 0.4186 9 6 1.4158 -2.3663 -0.5482 10 6 0.4179 -2.2490 -1.5368 11 6 -0.1518 -3.3680 -2.0624 12 6 0.2508 -4.6361 -1.6227 13 6 -0.3726 -5.8468 -2.1975 14 6 -1.3802 -5.7204 -3.1878 15 6 -1.9459 -6.8343 -3.7149 16 6 -1.5280 -8.1040 -3.2618 17 6 -1.8958 -9.3942 -3.5830 18 7 -1.1634 -10.2215 -2.8347 19 6 -0.3604 -9.5329 -2.0646 20 7 -0.5492 -8.2075 -2.2934 21 6 0.0197 -7.0818 -1.7699 22 6 1.2406 -4.7607 -0.6419 23 6 1.8226 -3.6460 -0.1117 24 9 2.7820 -3.7664 0.8318 25 1 -0.4850 -0.8356 0.0862 26 1 0.1058 -1.2726 -1.8768 27 1 -0.9167 -3.2782 -2.8195 28 1 -1.6925 -4.7423 -3.5230 29 1 -2.7109 -6.7507 -4.4726 30 1 -2.6412 -9.6827 -4.3094 31 1 0.3415 -9.9521 -1.3588 32 1 0.7851 -7.1695 -1.0129 33 1 1.5476 -5.7405 -0.3069 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245898047.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:29 Heat of formation + Delta-G solvation = 46.052409 kcal Electronic energy + Delta-G solvation = -20311.002023 eV Core-core repulsion = 17023.347315 eV Total energy + Delta-G solvation = -3287.654707 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -47.58036 -42.40323 -38.48457 -36.79670 -34.43383 -33.15865 -31.44586 -29.78226 -28.95244 -27.67418 -25.55043 -23.55319 -22.57846 -21.52423 -21.15786 -20.56349 -18.45864 -17.56200 -16.74294 -16.07756 -15.51418 -15.32904 -15.07759 -14.66372 -14.46033 -14.39367 -14.16799 -13.73942 -13.26724 -12.92706 -12.83854 -12.21310 -12.14004 -11.92367 -11.66857 -11.36366 -10.99112 -10.94685 -10.62054 -10.51005 -10.18904 -10.12725 -9.93652 -9.48596 -9.08073 -8.05509 -7.85495 -7.60876 -7.15202 -4.81841 0.97137 1.35584 2.39888 2.43755 2.92590 2.94890 3.00128 3.15946 3.28893 3.70404 3.71151 4.23385 4.68910 4.77243 4.95364 5.00738 5.07513 5.15358 5.27310 5.58521 5.62208 5.66777 5.79606 6.07188 6.15870 6.19871 6.37847 6.51488 6.64682 6.74569 6.84714 6.93601 7.10893 7.27940 7.38719 7.47654 7.50256 7.59494 7.78573 8.06307 8.21657 8.34274 9.55009 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.037296 B = 0.003805 C = 0.003500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.567949 B = 7356.815125 C = 7999.092623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.763 5.763 2 C 0.035 3.965 3 Si 1.068 2.932 4 H -0.269 1.269 5 H -0.271 1.271 6 H -0.269 1.269 7 C -0.473 4.473 8 H 0.089 0.911 9 C 0.074 3.926 10 C -0.210 4.210 11 C -0.053 4.053 12 C -0.198 4.198 13 C 0.015 3.985 14 C -0.112 4.112 15 C -0.083 4.083 16 C -0.005 4.005 17 C -0.039 4.039 18 N -0.461 5.461 19 C 0.117 3.883 20 N -0.345 5.345 21 C -0.020 4.020 22 C -0.083 4.083 23 C -0.030 4.030 24 F -0.160 7.160 25 H 0.304 0.696 26 H 0.116 0.884 27 H 0.103 0.897 28 H 0.137 0.863 29 H 0.142 0.858 30 H 0.174 0.826 31 H 0.205 0.795 32 H 0.160 0.840 33 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.801 -4.940 -4.085 6.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.384 5.384 2 C -0.190 4.190 3 Si 0.890 3.110 4 H -0.193 1.193 5 H -0.196 1.196 6 H -0.194 1.194 7 C -0.499 4.499 8 H 0.107 0.893 9 C 0.070 3.930 10 C -0.229 4.229 11 C -0.072 4.072 12 C -0.200 4.200 13 C 0.012 3.988 14 C -0.133 4.133 15 C -0.103 4.103 16 C -0.116 4.116 17 C -0.194 4.194 18 N -0.175 5.175 19 C -0.156 4.156 20 N -0.014 5.014 21 C -0.140 4.140 22 C -0.102 4.102 23 C -0.050 4.050 24 F -0.139 7.139 25 H 0.118 0.882 26 H 0.134 0.866 27 H 0.121 0.879 28 H 0.155 0.845 29 H 0.159 0.841 30 H 0.191 0.809 31 H 0.221 0.779 32 H 0.177 0.823 33 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -1.956 -4.233 -3.979 6.130 hybrid contribution 0.449 -0.935 0.347 1.094 sum -1.507 -5.168 -3.633 6.494 Atomic orbital electron populations 1.70515 1.08208 1.34895 1.24736 1.27326 0.95566 1.04878 0.91238 0.83572 0.75783 0.73059 0.78611 1.19315 1.19572 1.19446 1.20786 1.03696 0.94055 1.31328 0.89289 1.17793 0.92268 0.91301 0.91662 1.20648 1.03511 0.97809 1.00944 1.20458 0.97447 0.91659 0.97592 1.17393 1.05670 0.90491 1.06495 1.18302 0.94392 0.91628 0.94433 1.21248 0.96356 0.99051 0.96654 1.20379 1.00537 0.88957 1.00434 1.19697 0.97380 0.96767 0.97746 1.22347 1.05193 0.86632 1.05261 1.69879 1.06943 1.33508 1.07192 1.24832 1.06676 0.77146 1.06970 1.42790 1.25449 1.07133 1.26043 1.21481 1.04139 0.83699 1.04634 1.20303 0.96745 0.96253 0.96879 1.17251 0.97115 0.94158 0.96464 1.91306 1.62373 1.96778 1.63468 0.88161 0.86584 0.87894 0.84547 0.84056 0.80914 0.77860 0.82296 0.87670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -17.89 12.32 55.54 0.68 -17.21 16 2 C 0.04 0.79 4.89 -17.35 -0.08 0.71 16 3 Si 1.07 19.02 30.01 -169.99 -5.10 13.92 16 4 H -0.27 -4.75 7.11 56.52 0.40 -4.34 16 5 H -0.27 -4.62 7.11 56.52 0.40 -4.22 16 6 H -0.27 -4.63 7.11 56.52 0.40 -4.23 16 7 C -0.47 -11.41 8.67 -37.97 -0.33 -11.74 16 8 H 0.09 2.14 7.80 -52.49 -0.41 1.73 16 9 C 0.07 1.78 5.30 -106.73 -0.57 1.21 16 10 C -0.21 -4.67 7.91 -39.31 -0.31 -4.98 16 11 C -0.05 -1.05 9.36 -39.63 -0.37 -1.42 16 12 C -0.20 -3.87 5.90 -104.65 -0.62 -4.49 16 13 C 0.02 0.26 5.84 -105.25 -0.61 -0.36 16 14 C -0.11 -1.68 9.41 -39.15 -0.37 -2.05 16 15 C -0.08 -1.14 10.09 -39.43 -0.40 -1.54 16 16 C 0.00 -0.08 6.80 -84.06 -0.57 -0.65 16 17 C -0.04 -0.58 12.00 -16.95 -0.20 -0.78 16 18 N -0.46 -7.40 11.19 -13.77 -0.15 -7.55 16 19 C 0.12 1.74 12.78 -89.37 -1.14 0.60 16 20 N -0.35 -5.50 2.95 -61.88 -0.18 -5.69 16 21 C -0.02 -0.32 10.37 -16.09 -0.17 -0.49 16 22 C -0.08 -1.69 9.31 -39.59 -0.37 -2.06 16 23 C -0.03 -0.70 7.25 -39.10 -0.28 -0.98 16 24 F -0.16 -3.75 16.70 2.25 0.04 -3.71 16 25 H 0.30 7.30 6.79 -40.82 -0.28 7.03 16 26 H 0.12 2.61 6.52 -52.49 -0.34 2.27 16 27 H 0.10 1.74 6.16 -52.49 -0.32 1.42 16 28 H 0.14 1.81 6.20 -52.48 -0.33 1.48 16 29 H 0.14 1.44 8.06 -52.49 -0.42 1.02 16 30 H 0.17 2.01 8.06 -52.49 -0.42 1.58 16 31 H 0.20 2.27 8.06 -52.48 -0.42 1.85 16 32 H 0.16 2.33 6.06 -52.49 -0.32 2.01 16 33 H 0.11 1.89 6.13 -52.49 -0.32 1.56 16 LS Contribution 290.21 15.07 4.37 4.37 Total: -1.00 -26.59 290.21 -9.12 -35.71 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -2.38 Total: 9.15 kcal Atomic # 6 Polarization: -22.60 SS G_CDS: -6.40 Total: -29.00 kcal Atomic # 7 Polarization: -30.79 SS G_CDS: 0.35 Total: -30.45 kcal Atomic # 9 Polarization: -3.75 SS G_CDS: 0.04 Total: -3.71 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -5.10 Total: 13.92 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -26.59 -9.12 -35.71 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245898047.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.760 kcal (2) G-P(sol) polarization free energy of solvation -26.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds