Wall clock time and date at job start Tue Mar 31 2020 06:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35937 * 116.99626 * 2 1 4 4 C 1.39054 * 120.48105 * 359.72628 * 3 2 1 5 5 C 1.38598 * 118.38785 * 179.75358 * 4 3 2 6 6 C 1.50704 * 120.37217 * 180.23879 * 5 4 3 7 7 N 1.46900 * 109.47373 * 270.23930 * 6 5 4 8 8 C 1.47486 * 110.99738 * 265.97346 * 7 6 5 9 9 C 1.53516 * 87.92826 * 221.29883 * 8 7 6 10 10 C 1.50697 * 114.34285 * 139.68780 * 9 8 7 11 11 H 1.07995 * 119.99895 * 266.07325 * 10 9 8 12 12 C 1.37873 * 120.00214 * 86.07125 * 10 9 8 13 13 N 1.31518 * 119.99942 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 120.00235 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.46778 * 60.00446 * 14 12 10 16 16 H 1.48496 * 109.47220 * 179.97438 * 14 12 10 17 17 H 1.48496 * 109.47272 * 300.00344 * 14 12 10 18 18 C 1.47470 * 110.99715 * 170.00359 * 7 6 5 19 19 C 1.38201 * 119.24786 * 0.47983 * 5 4 3 20 20 N 1.31877 * 120.89846 * 359.78329 * 19 5 4 21 21 C 1.31915 * 121.76648 * 359.97438 * 20 19 5 22 22 Cl 1.73597 * 119.67385 * 180.02562 * 21 20 19 23 23 H 1.09001 * 109.47103 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47054 * 299.99738 * 1 2 3 25 25 H 1.09000 * 109.47187 * 59.99794 * 1 2 3 26 26 H 1.08000 * 120.80298 * 359.97438 * 4 3 2 27 27 H 1.08999 * 109.46856 * 30.24248 * 6 5 4 28 28 H 1.09000 * 109.46727 * 150.23729 * 6 5 4 29 29 H 1.08998 * 113.47090 * 336.06305 * 8 7 6 30 30 H 1.09000 * 113.47276 * 106.52988 * 8 7 6 31 31 H 1.09000 * 114.16850 * 272.37724 * 9 8 7 32 32 H 0.97003 * 119.99958 * 179.97438 * 13 12 10 33 33 H 1.09001 * 113.47838 * 253.46851 * 18 7 6 34 34 H 1.08998 * 113.48464 * 23.93371 * 18 7 6 35 35 H 1.07998 * 119.54583 * 179.76507 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2112 0.0000 4 6 1.2985 2.3837 -0.0057 5 6 1.9723 3.5949 -0.0002 6 6 1.2065 4.8929 -0.0007 7 7 0.9586 5.3147 -1.3858 8 6 2.0060 6.2429 -1.8511 9 6 0.8988 7.0681 -2.5216 10 6 1.0738 8.5597 -2.3972 11 1 0.5942 9.0943 -1.5907 12 6 1.8463 9.2420 -3.3131 13 7 2.4299 8.5911 -4.2956 14 14 2.0627 11.0910 -3.1593 15 1 2.6917 11.4086 -1.8521 16 1 2.9326 11.5807 -4.2586 17 1 0.7364 11.7534 -3.2444 18 6 0.0137 6.4460 -1.4325 19 6 3.3543 3.5987 0.0006 20 7 4.0347 2.4690 0.0005 21 6 3.4322 1.2955 0.0001 22 17 4.3815 -0.1579 0.0007 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 0.2190 2.3513 -0.0107 27 1 0.2551 4.7535 0.5126 28 1 1.7882 5.6579 0.5136 29 1 2.5102 6.7699 -1.0410 30 1 2.7016 5.7928 -2.5593 31 1 0.6534 6.7465 -3.5338 32 1 2.9731 9.0711 -4.9402 33 1 -0.9792 6.1682 -1.7861 34 1 -0.0138 7.0273 -0.5109 35 1 3.8843 4.5397 0.0010 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001249917101.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:05 Heat of formation + Delta-G solvation = 28.291158 kcal Electronic energy + Delta-G solvation = -19317.213877 eV Core-core repulsion = 16149.816439 eV Total energy + Delta-G solvation = -3167.397437 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.82758 -39.09994 -38.22512 -36.57275 -33.58430 -32.41296 -30.99537 -28.92855 -27.62584 -25.82396 -24.89958 -23.42125 -23.13077 -21.37493 -18.74049 -18.06078 -17.40475 -17.03662 -16.64160 -16.13944 -15.04089 -14.72357 -14.60634 -14.27711 -13.99743 -13.88147 -13.74922 -13.31489 -12.39851 -12.08889 -11.87315 -11.70551 -11.67806 -11.57351 -11.37595 -11.18178 -10.99342 -10.73698 -10.39054 -9.98823 -9.72255 -9.65708 -9.23013 -9.03667 -8.50705 -8.37527 -8.14392 -6.10638 -4.16242 0.90133 1.11241 1.85549 2.90870 3.26680 3.32743 3.33975 3.55658 4.35374 4.43378 4.44775 4.81756 4.83241 4.87222 4.92866 5.00167 5.16831 5.18933 5.25928 5.39425 5.70306 5.73769 5.96366 6.13713 6.21570 6.26702 6.35089 6.56367 6.59411 6.91049 7.02945 7.06214 7.64959 7.69659 7.81366 7.94065 8.29434 8.86969 9.49511 10.98749 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.029321 B = 0.003561 C = 0.003321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.718252 B = 7861.276344 C = 8430.168554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.302 6.302 3 C 0.094 3.906 4 C -0.139 4.139 5 C -0.063 4.063 6 C 0.056 3.944 7 N -0.480 5.480 8 C 0.003 3.997 9 C 0.043 3.957 10 C -0.520 4.520 11 H 0.058 0.942 12 C 0.068 3.932 13 N -0.885 5.885 14 Si 0.892 3.108 15 H -0.276 1.276 16 H -0.286 1.286 17 H -0.276 1.276 18 C -0.005 4.005 19 C 0.089 3.911 20 N -0.440 5.440 21 C 0.136 3.864 22 Cl -0.029 7.029 23 H 0.103 0.897 24 H 0.057 0.943 25 H 0.061 0.939 26 H 0.148 0.852 27 H 0.076 0.924 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.263 0.737 33 H 0.063 0.937 34 H 0.056 0.944 35 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.070 -14.570 10.069 17.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.214 6.214 3 C 0.045 3.955 4 C -0.167 4.167 5 C -0.065 4.065 6 C -0.073 4.073 7 N -0.203 5.203 8 C -0.126 4.126 9 C 0.024 3.976 10 C -0.558 4.558 11 H 0.076 0.924 12 C -0.135 4.135 13 N -0.521 5.521 14 Si 0.719 3.281 15 H -0.202 1.202 16 H -0.212 1.212 17 H -0.201 1.201 18 C -0.133 4.133 19 C -0.069 4.069 20 N -0.151 5.151 21 C -0.029 4.029 22 Cl -0.001 7.001 23 H 0.122 0.878 24 H 0.076 0.924 25 H 0.079 0.921 26 H 0.165 0.835 27 H 0.095 0.905 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -2.020 -15.506 9.570 18.333 hybrid contribution -0.599 1.635 0.569 1.832 sum -2.618 -13.871 10.139 17.380 Atomic orbital electron populations 1.23158 0.77839 1.04340 1.01800 1.86159 1.21709 1.25189 1.88329 1.19502 0.91257 0.85878 0.98894 1.21542 1.00959 0.90603 1.03548 1.20808 0.94656 0.95715 0.95355 1.21623 0.98789 0.92553 0.94369 1.68956 1.09196 1.27209 1.14893 1.24189 0.96440 0.92739 0.99211 1.20075 0.89474 0.94152 0.93905 1.20969 1.30992 0.91778 1.12095 0.92421 1.25015 0.95355 0.98287 0.94839 1.69954 1.31688 1.35968 1.14527 0.86671 0.78180 0.85498 0.77737 1.20197 1.21202 1.20143 1.24041 0.97200 0.91159 1.00923 1.22525 0.90928 0.95225 0.98216 1.67060 1.40084 0.96851 1.11057 1.20799 0.85777 0.89413 1.06932 1.98379 1.73111 1.31866 1.96754 0.87820 0.92447 0.92074 0.83454 0.90513 0.92224 0.92515 0.91642 0.91768 0.92702 0.91837 0.92540 0.81631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.83 101.05 0.99 1.18 16 2 O -0.30 -3.59 9.97 -19.54 -0.19 -3.78 16 3 C 0.09 1.27 6.70 -39.05 -0.26 1.01 16 4 C -0.14 -1.81 8.82 -39.15 -0.35 -2.15 16 5 C -0.06 -0.90 5.48 -104.50 -0.57 -1.47 16 6 C 0.06 0.82 4.96 -4.97 -0.02 0.80 16 7 N -0.48 -8.87 6.32 -246.09 -1.55 -10.42 16 8 C 0.00 0.06 7.29 -7.54 -0.05 0.01 16 9 C 0.04 1.03 3.76 -91.24 -0.34 0.68 16 10 C -0.52 -13.59 8.83 -34.44 -0.30 -13.89 16 11 H 0.06 1.47 7.81 -52.49 -0.41 1.06 16 12 C 0.07 1.83 5.46 -17.82 -0.10 1.74 16 13 N -0.88 -24.95 13.26 55.43 0.74 -24.21 16 14 Si 0.89 20.49 29.54 -169.99 -5.02 15.47 16 15 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 16 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 17 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 18 C 0.00 -0.09 7.24 -7.55 -0.05 -0.15 16 19 C 0.09 1.34 10.85 -17.55 -0.19 1.15 16 20 N -0.44 -7.03 10.34 -10.25 -0.11 -7.14 16 21 C 0.14 2.05 7.29 -17.28 -0.13 1.93 16 22 Cl -0.03 -0.40 28.66 -51.86 -1.49 -1.89 16 23 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.06 0.37 7.71 -51.93 -0.40 -0.03 16 25 H 0.06 0.46 7.69 -51.93 -0.40 0.06 16 26 H 0.15 1.56 6.45 -52.49 -0.34 1.22 16 27 H 0.08 0.99 8.03 -51.93 -0.42 0.57 16 28 H 0.06 0.87 7.25 -51.93 -0.38 0.49 16 29 H 0.06 1.20 7.38 -51.93 -0.38 0.81 16 30 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 31 H 0.06 1.70 8.11 -51.93 -0.42 1.28 16 32 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 33 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.06 1.05 7.87 -51.93 -0.41 0.64 16 35 H 0.17 2.30 8.06 -52.49 -0.42 1.88 16 LS Contribution 315.01 15.07 4.75 4.75 Total: -1.00 -28.95 315.01 -8.64 -37.59 By element: Atomic # 1 Polarization: 3.19 SS G_CDS: -4.38 Total: -1.19 kcal Atomic # 6 Polarization: -7.79 SS G_CDS: -1.38 Total: -9.17 kcal Atomic # 7 Polarization: -40.85 SS G_CDS: -0.93 Total: -41.77 kcal Atomic # 8 Polarization: -3.59 SS G_CDS: -0.19 Total: -3.78 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Atomic # 17 Polarization: -0.40 SS G_CDS: -1.49 Total: -1.89 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -28.95 -8.64 -37.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001249917101.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.882 kcal (2) G-P(sol) polarization free energy of solvation -28.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds