Wall clock time and date at job start Tue Mar 31 2020 06:23:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36540 * 127.14422 * 2 1 4 4 S 1.76198 * 126.48380 * 0.03028 * 3 2 1 5 5 C 1.80992 * 100.00165 * 179.97438 * 4 3 2 6 6 C 1.50703 * 109.47245 * 179.97438 * 5 4 3 7 7 O 1.21291 * 120.00104 * 359.97438 * 6 5 4 8 8 N 1.34777 * 119.99853 * 179.97438 * 6 5 4 9 9 C 1.37097 * 119.99794 * 179.97438 * 8 6 5 10 10 H 1.08002 * 119.99890 * 0.02562 * 9 8 6 11 11 C 1.38950 * 120.00040 * 179.97438 * 9 8 6 12 12 N 1.31413 * 119.99697 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00166 * 180.02562 * 11 9 8 14 14 H 1.48504 * 109.47138 * 90.00267 * 13 11 9 15 15 H 1.48498 * 109.47437 * 210.00220 * 13 11 9 16 16 H 1.48500 * 109.46857 * 330.00492 * 13 11 9 17 17 N 1.31275 * 107.03160 * 180.02562 * 3 2 1 18 18 N 1.28528 * 109.85671 * 359.73551 * 17 3 2 19 19 C 1.30293 * 110.07866 * 0.44770 * 18 17 3 20 20 C 1.50706 * 126.34053 * 179.82197 * 19 18 17 21 21 C 1.53002 * 117.49668 * 59.69357 * 20 19 18 22 22 C 1.53000 * 60.02940 * 252.51929 * 21 20 19 23 23 H 1.09008 * 109.46890 * 269.96888 * 1 2 3 24 24 H 1.08999 * 109.47317 * 29.96691 * 1 2 3 25 25 H 1.09001 * 109.47122 * 149.97026 * 1 2 3 26 26 H 1.09001 * 109.47001 * 299.99755 * 5 4 3 27 27 H 1.09003 * 109.47371 * 59.99840 * 5 4 3 28 28 H 0.97003 * 120.00098 * 0.02562 * 8 6 5 29 29 H 0.97002 * 119.99298 * 179.97438 * 12 11 9 30 30 H 1.09000 * 115.55924 * 205.37762 * 20 19 18 31 31 H 1.09002 * 117.49918 * 145.01964 * 21 20 19 32 32 H 1.09002 * 117.49754 * 0.02562 * 21 20 19 33 33 H 1.09008 * 117.49673 * 107.47884 * 22 21 20 34 34 H 1.08999 * 117.49942 * 252.47315 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2895 1.0884 0.0000 4 16 1.7928 2.7789 0.0007 5 6 3.4144 3.5829 0.0011 6 6 3.2333 5.0790 0.0011 7 8 2.1176 5.5549 0.0005 8 7 4.3111 5.8883 0.0019 9 6 4.1463 7.2493 0.0014 10 1 3.1529 7.6730 0.0008 11 6 5.2575 8.0836 0.0028 12 7 6.4662 7.5680 0.0040 13 14 5.0330 9.9381 0.0028 14 1 4.9721 10.4293 1.4029 15 1 6.1780 10.5754 -0.6959 16 1 3.7705 10.2839 -0.6985 17 7 3.5222 0.6370 -0.0006 18 7 3.5164 -0.6483 0.0047 19 6 2.2907 -1.0901 -0.0007 20 6 1.8623 -2.5350 -0.0011 21 6 2.3124 -3.4056 1.1738 22 6 2.9485 -3.5941 -0.2049 23 1 -0.3633 -0.0006 1.0277 24 1 -0.3634 0.8903 -0.5133 25 1 -0.3633 -0.8897 -0.5143 26 1 3.9681 3.2836 0.8910 27 1 3.9682 3.2844 -0.8890 28 1 5.2033 5.5077 0.0021 29 1 7.2419 8.1505 0.0046 30 1 0.8789 -2.7338 -0.4270 31 1 1.6252 -4.1772 1.5208 32 1 2.9181 -2.9332 1.9472 33 1 3.9726 -3.2454 -0.3386 34 1 2.6800 -4.4900 -0.7647 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318326556.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:48 Heat of formation + Delta-G solvation = 67.108766 kcal Electronic energy + Delta-G solvation = -18715.138704 eV Core-core repulsion = 15583.760982 eV Total energy + Delta-G solvation = -3131.377722 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.089 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.86682 -38.21962 -37.44073 -35.05142 -34.08770 -31.45690 -30.56428 -29.19071 -27.76975 -24.78317 -24.21827 -22.89833 -22.48750 -20.33414 -19.60515 -18.15720 -17.61811 -16.76998 -16.40210 -15.97635 -15.58965 -14.90978 -14.55985 -14.55537 -14.11133 -13.65250 -13.48237 -13.31591 -12.59828 -12.39938 -12.14187 -11.86466 -11.62447 -11.53316 -11.39166 -11.10996 -10.94772 -10.72181 -10.44293 -10.31201 -10.30010 -10.09362 -9.62503 -9.58367 -8.67425 -8.10075 -7.40996 -6.50482 -3.92550 1.20241 1.56680 2.32187 2.53377 2.72929 3.12807 3.23396 3.29104 3.57174 3.72036 4.00482 4.10987 4.31455 4.51781 4.52567 4.65507 4.80582 4.85333 5.11545 5.14901 5.16834 5.31675 5.47579 5.60643 5.64282 5.80198 5.81110 5.87657 5.95958 6.12404 6.63509 7.47225 7.91590 8.44489 8.66046 9.04679 9.38481 9.86743 10.66402 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.044064 B = 0.003113 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.284075 B = 8992.767936 C = 9535.660978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.465 5.465 3 C 0.147 3.853 4 S 0.076 5.924 5 C -0.125 4.125 6 C 0.450 3.550 7 O -0.586 6.586 8 N -0.545 5.545 9 C -0.304 4.304 10 H 0.107 0.893 11 C 0.026 3.974 12 N -0.894 5.894 13 Si 0.934 3.066 14 H -0.276 1.276 15 H -0.282 1.282 16 H -0.268 1.268 17 N -0.296 5.296 18 N -0.283 5.283 19 C 0.202 3.798 20 C -0.085 4.085 21 C -0.158 4.158 22 C -0.149 4.149 23 H 0.085 0.915 24 H 0.095 0.905 25 H 0.091 0.909 26 H 0.110 0.890 27 H 0.110 0.890 28 H 0.397 0.603 29 H 0.274 0.726 30 H 0.122 0.878 31 H 0.103 0.897 32 H 0.100 0.900 33 H 0.110 0.890 34 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.885 -19.994 0.307 22.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.159 5.159 3 C -0.226 4.226 4 S 0.303 5.697 5 C -0.277 4.277 6 C 0.234 3.766 7 O -0.473 6.473 8 N -0.180 5.180 9 C -0.434 4.434 10 H 0.124 0.876 11 C -0.177 4.177 12 N -0.534 5.534 13 Si 0.760 3.240 14 H -0.202 1.202 15 H -0.208 1.208 16 H -0.193 1.193 17 N -0.140 5.140 18 N -0.123 5.123 19 C -0.067 4.067 20 C -0.106 4.106 21 C -0.197 4.197 22 C -0.187 4.187 23 H 0.103 0.897 24 H 0.114 0.886 25 H 0.110 0.890 26 H 0.128 0.872 27 H 0.128 0.872 28 H 0.231 0.769 29 H 0.084 0.916 30 H 0.140 0.860 31 H 0.122 0.878 32 H 0.119 0.881 33 H 0.129 0.871 34 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -9.995 -19.045 0.299 21.511 hybrid contribution 0.392 0.136 -0.023 0.415 sum -9.603 -18.909 0.276 21.210 Atomic orbital electron populations 1.22128 0.75120 1.05244 1.04421 1.46153 1.08604 1.04824 1.56307 1.27586 0.90148 0.97676 1.07234 1.86058 1.09260 0.82539 1.91872 1.23661 0.97621 0.98473 1.07950 1.18890 0.86065 0.85520 0.86098 1.90551 1.23931 1.75772 1.57014 1.41748 1.07183 1.06490 1.62568 1.19752 0.95099 0.80226 1.48300 0.87569 1.25337 0.94528 1.01086 0.96747 1.69623 0.97870 1.36714 1.49179 0.85801 0.78113 0.81539 0.78517 1.20229 1.20780 1.19261 1.74725 1.15777 1.02695 1.20791 1.73836 1.17094 1.03387 1.17983 1.23898 0.86808 0.90259 1.05726 1.20046 1.00390 0.83332 1.06814 1.23082 1.03437 1.01120 0.92037 1.23043 0.98491 0.98203 0.98938 0.89683 0.88610 0.89049 0.87167 0.87173 0.76948 0.91556 0.85991 0.87838 0.88131 0.87127 0.87837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.59 10.92 59.85 0.65 1.24 16 2 N -0.47 -6.07 3.21 -120.90 -0.39 -6.46 16 3 C 0.15 2.41 8.07 -88.34 -0.71 1.70 16 4 S 0.08 1.29 20.94 -107.50 -2.25 -0.96 16 5 C -0.12 -2.37 5.72 36.01 0.21 -2.16 16 6 C 0.45 10.67 7.80 -10.98 -0.09 10.59 16 7 O -0.59 -15.60 15.44 5.55 0.09 -15.51 16 8 N -0.54 -13.83 5.29 -10.96 -0.06 -13.88 16 9 C -0.30 -8.38 9.68 -14.93 -0.14 -8.52 16 10 H 0.11 3.04 7.16 -52.49 -0.38 2.66 16 11 C 0.03 0.69 5.50 -17.47 -0.10 0.59 16 12 N -0.89 -24.14 13.05 55.50 0.72 -23.42 16 13 Si 0.93 20.72 29.55 -169.99 -5.02 15.70 16 14 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 15 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 16 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 17 N -0.30 -5.44 11.60 30.68 0.36 -5.09 16 18 N -0.28 -4.78 11.79 33.00 0.39 -4.39 16 19 C 0.20 2.70 7.59 -154.00 -1.17 1.53 16 20 C -0.09 -0.75 6.00 -91.73 -0.55 -1.30 16 21 C -0.16 -1.18 10.23 -26.73 -0.27 -1.45 16 22 C -0.15 -1.17 10.15 -26.70 -0.27 -1.44 16 23 H 0.08 0.57 8.14 -51.92 -0.42 0.14 16 24 H 0.10 0.75 7.86 -51.93 -0.41 0.35 16 25 H 0.09 0.47 7.44 -51.93 -0.39 0.08 16 26 H 0.11 1.99 8.14 -51.92 -0.42 1.57 16 27 H 0.11 1.99 8.14 -51.91 -0.42 1.56 16 28 H 0.40 9.68 7.90 -40.82 -0.32 9.36 16 29 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 30 H 0.12 0.74 7.54 -51.93 -0.39 0.35 16 31 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.11 1.08 7.92 -51.92 -0.41 0.67 16 34 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 LS Contribution 316.83 15.07 4.77 4.77 Total: -1.00 -33.46 316.83 -7.80 -41.26 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -3.97 Total: 7.20 kcal Atomic # 6 Polarization: 3.23 SS G_CDS: -2.44 Total: 0.78 kcal Atomic # 7 Polarization: -54.27 SS G_CDS: 1.02 Total: -53.24 kcal Atomic # 8 Polarization: -15.60 SS G_CDS: 0.09 Total: -15.51 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Atomic # 16 Polarization: 1.29 SS G_CDS: -2.25 Total: -0.96 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -33.46 -7.80 -41.26 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318326556.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.370 kcal (2) G-P(sol) polarization free energy of solvation -33.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds