Wall clock time and date at job start Tue Mar 31 2020 05:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46789 * 2 1 4 4 C 1.50694 * 109.47184 * 119.99532 * 2 1 3 5 5 N 1.28015 * 120.00372 * 239.99667 * 4 2 1 6 6 N 1.40096 * 120.00569 * 185.15389 * 5 4 2 7 7 C 1.36546 * 120.74210 * 245.86225 * 6 5 4 8 8 S 1.76207 * 119.80894 * 359.97438 * 7 6 5 9 9 N 1.32240 * 120.37633 * 179.75718 * 7 6 5 10 10 N 1.28483 * 121.99938 * 0.53151 * 9 7 6 11 11 C 1.31299 * 121.47259 * 359.72842 * 10 9 7 12 12 C 1.35295 * 120.74110 * 66.13352 * 6 5 4 13 13 O 1.21990 * 120.90637 * 359.96171 * 12 6 5 14 14 C 1.53003 * 109.47007 * 240.00353 * 2 1 3 15 15 C 1.50693 * 109.47442 * 59.99556 * 14 2 1 16 16 H 1.08004 * 120.00060 * 0.02562 * 15 14 2 17 17 C 1.37874 * 120.00034 * 180.02562 * 15 14 2 18 18 N 1.31513 * 119.99976 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00132 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47047 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47668 * 119.99433 * 19 17 15 22 22 H 1.48502 * 109.47021 * 239.99813 * 19 17 15 23 23 H 1.09004 * 109.46802 * 299.99962 * 1 2 3 24 24 H 1.08998 * 109.47241 * 59.99979 * 1 2 3 25 25 H 1.09003 * 109.46955 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.46981 * 180.02562 * 3 2 1 27 27 H 1.09008 * 109.47240 * 300.00098 * 3 2 1 28 28 H 1.08993 * 109.47590 * 60.00035 * 3 2 1 29 29 H 1.08002 * 120.00027 * 60.00642 * 4 2 1 30 30 H 1.40998 * 99.99764 * 180.02562 * 8 7 6 31 31 H 1.08001 * 120.26915 * 180.02562 * 11 10 9 32 32 H 1.09000 * 109.46955 * 180.02562 * 14 2 1 33 33 H 1.09003 * 109.46457 * 299.99318 * 14 2 1 34 34 H 0.96999 * 119.99765 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7103 1.2305 5 7 2.7684 -0.0882 2.0731 6 7 3.3242 -0.7759 3.1598 7 6 2.9440 -0.4845 4.4384 8 16 1.7417 0.7702 4.7305 9 7 3.4697 -1.1415 5.4586 10 7 4.3534 -2.0596 5.2944 11 6 4.7772 -2.3971 4.0984 12 6 4.2536 -1.7398 2.9660 13 8 4.6280 -2.0324 1.8425 14 6 2.0400 -0.7212 -1.2493 15 6 1.5376 -0.0109 -2.4797 16 1 0.9170 0.8675 -2.3806 17 6 1.8703 -0.4822 -3.7320 18 7 2.6264 -1.5514 -3.8526 19 14 1.2481 0.3987 -5.2572 20 1 0.4235 1.5657 -4.8530 21 1 2.4033 0.8647 -6.0657 22 1 0.4224 -0.5341 -6.0654 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 3.1299 1.4426 -0.0005 27 1 1.6766 1.9564 -0.8900 28 1 1.6767 1.9564 0.8899 29 1 1.7715 -1.7443 1.4014 30 1 1.6723 0.7199 6.1378 31 1 5.5205 -3.1721 3.9829 32 1 3.1300 -0.7216 -1.2491 33 1 1.6767 -1.7489 -1.2492 34 1 2.8601 -1.8832 -4.7336 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320926515.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:11 Heat of formation + Delta-G solvation = 73.645606 kcal Electronic energy + Delta-G solvation = -19787.146786 eV Core-core repulsion = 16656.052523 eV Total energy + Delta-G solvation = -3131.094263 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.089 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.12995 -38.67961 -37.84606 -36.19021 -33.08345 -32.13668 -31.53865 -27.29738 -26.70157 -26.49216 -25.26070 -24.01566 -22.15359 -19.96968 -19.02366 -18.57201 -17.84982 -16.63683 -16.40890 -16.30705 -15.49673 -14.83474 -14.72206 -14.16551 -13.82821 -13.49248 -13.15541 -12.77091 -12.62313 -12.17175 -11.77407 -11.60702 -11.43185 -11.20160 -11.09349 -10.97729 -10.85283 -10.72919 -10.63642 -10.36704 -10.04271 -9.87830 -9.41126 -9.13565 -9.08321 -8.53921 -8.44407 -6.07527 -4.10661 0.00516 0.41105 1.19150 1.46449 1.76597 1.90838 3.14528 3.27248 3.35675 3.37639 3.66357 4.07430 4.37921 4.57040 4.77174 4.91836 5.26285 5.28716 5.52995 5.68359 5.71716 5.94761 6.09164 6.29115 6.41676 6.58918 6.82116 6.84576 6.99538 7.07264 7.48541 7.55987 7.67792 7.88776 8.19265 8.25629 8.93210 9.53264 11.03763 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.027052 B = 0.004449 C = 0.003949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.776298 B = 6292.519259 C = 7088.830189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.023 4.023 3 C -0.123 4.123 4 C 0.207 3.793 5 N -0.287 5.287 6 N -0.369 5.369 7 C 0.342 3.658 8 S 0.035 5.965 9 N -0.353 5.353 10 N -0.178 5.178 11 C -0.018 4.018 12 C 0.482 3.518 13 O -0.489 6.489 14 C 0.040 3.960 15 C -0.514 4.514 16 H 0.065 0.935 17 C 0.059 3.941 18 N -0.891 5.891 19 Si 0.892 3.108 20 H -0.271 1.271 21 H -0.284 1.284 22 H -0.284 1.284 23 H 0.041 0.959 24 H 0.083 0.917 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.071 0.929 28 H 0.043 0.957 29 H 0.111 0.889 30 H 0.128 0.872 31 H 0.200 0.800 32 H 0.024 0.976 33 H 0.022 0.978 34 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.166 2.789 16.316 16.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.026 4.026 3 C -0.180 4.180 4 C -0.003 4.003 5 N -0.088 5.088 6 N -0.175 5.175 7 C -0.030 4.030 8 S 0.191 5.809 9 N -0.204 5.204 10 N -0.012 5.012 11 C -0.215 4.215 12 C 0.272 3.728 13 O -0.356 6.356 14 C 0.002 3.998 15 C -0.552 4.552 16 H 0.083 0.917 17 C -0.143 4.143 18 N -0.530 5.530 19 Si 0.720 3.280 20 H -0.196 1.196 21 H -0.211 1.211 22 H -0.211 1.211 23 H 0.060 0.940 24 H 0.102 0.898 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.090 0.910 28 H 0.062 0.938 29 H 0.128 0.872 30 H 0.092 0.908 31 H 0.217 0.783 32 H 0.042 0.958 33 H 0.040 0.960 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.008 3.808 17.228 17.898 hybrid contribution 0.323 -1.200 -1.542 1.980 sum -2.684 2.608 15.686 16.126 Atomic orbital electron populations 1.21758 0.92611 1.01961 1.02020 1.20205 0.96185 0.96596 0.89634 1.21673 1.01190 0.93974 1.01147 1.27689 0.83023 0.98073 0.91486 1.75639 1.15992 1.19553 0.97648 1.48152 1.33285 1.31086 1.05008 1.26830 0.96087 0.96989 0.83119 1.87720 1.42435 1.37673 1.13109 1.74068 1.14278 1.10545 1.21507 1.72068 1.02153 1.04448 1.22523 1.25912 1.04315 1.04148 0.87095 1.18627 0.81220 0.80131 0.92794 1.91126 1.57802 1.62210 1.24434 1.19185 0.97033 0.95238 0.88379 1.21109 1.31794 1.12382 0.89947 0.91722 1.25008 0.95107 0.95021 0.99183 1.69981 1.36491 1.22908 1.23603 0.86535 0.78637 0.79673 0.83158 1.19592 1.21057 1.21067 0.93991 0.89811 0.92815 0.92820 0.90987 0.93813 0.87220 0.90818 0.78312 0.95753 0.95988 0.92907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.96 8.20 37.16 0.30 -1.65 16 2 C -0.02 -0.42 0.75 -155.66 -0.12 -0.54 16 3 C -0.12 -2.15 7.45 37.16 0.28 -1.88 16 4 C 0.21 3.52 8.80 -13.87 -0.12 3.39 16 5 N -0.29 -4.81 8.88 32.67 0.29 -4.52 16 6 N -0.37 -5.85 3.26 -14.46 -0.05 -5.90 16 7 C 0.34 4.60 8.02 -87.52 -0.70 3.90 16 8 S 0.03 0.34 25.36 -107.50 -2.73 -2.38 16 9 N -0.35 -4.87 11.46 30.84 0.35 -4.51 16 10 N -0.18 -2.48 11.52 30.95 0.36 -2.12 16 11 C -0.02 -0.24 11.33 -16.73 -0.19 -0.43 16 12 C 0.48 8.05 7.39 -14.97 -0.11 7.94 16 13 O -0.49 -9.96 17.06 4.93 0.08 -9.87 16 14 C 0.04 0.94 4.02 -27.88 -0.11 0.83 16 15 C -0.51 -13.05 7.65 -34.44 -0.26 -13.31 16 16 H 0.06 1.55 5.68 -52.48 -0.30 1.25 16 17 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 18 N -0.89 -25.79 13.29 55.43 0.74 -25.05 16 19 Si 0.89 20.54 29.54 -169.99 -5.02 15.51 16 20 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 23 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.08 1.40 6.62 -51.93 -0.34 1.05 16 25 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 26 H 0.05 1.02 8.06 -51.93 -0.42 0.60 16 27 H 0.07 1.31 6.62 -51.92 -0.34 0.96 16 28 H 0.04 0.66 8.06 -51.93 -0.42 0.24 16 29 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 30 H 0.13 0.89 9.53 96.90 0.92 1.81 16 31 H 0.20 2.00 8.06 -52.49 -0.42 1.57 16 32 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 312.32 15.07 4.71 4.71 Total: -1.00 -30.86 312.32 -4.97 -35.83 By element: Atomic # 1 Polarization: 1.14 SS G_CDS: -2.57 Total: -1.43 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: -1.13 Total: -0.26 kcal Atomic # 7 Polarization: -43.80 SS G_CDS: 1.69 Total: -42.11 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: 0.08 Total: -9.87 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.51 kcal Atomic # 16 Polarization: 0.34 SS G_CDS: -2.73 Total: -2.38 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.86 -4.97 -35.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320926515.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.479 kcal (2) G-P(sol) polarization free energy of solvation -30.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds