Wall clock time and date at job start Tue Mar 31 2020 06:13:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.47606 * 2 1 4 4 C 1.47206 * 109.47046 * 239.99925 * 2 1 3 5 5 N 2.60803 * 109.47031 * 240.00014 * 2 1 3 6 6 O 1.42902 * 109.47265 * 119.99944 * 2 1 3 7 7 C 1.42895 * 114.00370 * 269.99763 * 6 2 1 8 8 C 1.52997 * 109.47503 * 179.97438 * 7 6 2 9 9 S 1.81002 * 109.47326 * 180.02562 * 8 7 6 10 10 C 1.76198 * 100.00092 * 179.97438 * 9 8 7 11 11 N 1.32386 * 126.25656 * 0.02657 * 10 9 8 12 12 N 1.28512 * 110.20261 * 180.02562 * 11 10 9 13 13 C 1.33103 * 109.74782 * 359.97438 * 12 11 10 14 14 C 1.39771 * 126.56451 * 180.02562 * 13 12 11 15 15 H 1.08004 * 119.99490 * 179.97438 * 14 13 12 16 16 C 1.40079 * 120.00395 * 359.96689 * 14 13 12 17 17 N 1.30812 * 119.99772 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00000 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47280 * 60.00572 * 18 16 14 20 20 H 1.48508 * 109.47023 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47373 * 300.00208 * 18 16 14 22 22 N 1.36667 * 126.26014 * 179.71236 * 10 9 8 23 23 C 1.46501 * 127.14958 * 359.97193 * 22 10 9 24 24 H 1.08996 * 109.46924 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46688 * 300.00166 * 1 2 3 26 26 H 1.08997 * 109.46918 * 60.00096 * 1 2 3 27 27 H 1.09002 * 109.46880 * 59.99856 * 7 6 2 28 28 H 1.08998 * 109.47064 * 300.00681 * 7 6 2 29 29 H 1.09002 * 109.47153 * 60.00043 * 8 7 6 30 30 H 1.09001 * 109.46832 * 300.00234 * 8 7 6 31 31 H 0.97000 * 119.99932 * 179.97438 * 17 16 14 32 32 H 1.09001 * 109.47686 * 90.02359 * 23 22 10 33 33 H 1.08999 * 109.47231 * 210.02412 * 23 22 10 34 34 H 1.09000 * 109.47342 * 330.02290 * 23 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0207 -0.6940 -1.2019 5 7 2.3993 -1.2294 -2.1295 6 8 2.0064 -0.6736 1.1668 7 6 2.2002 0.1829 2.2941 8 6 2.7080 -0.6408 3.4792 9 16 2.9528 0.4440 4.9073 10 6 3.5214 -0.7314 6.0904 11 7 3.6886 -2.0288 5.8872 12 7 4.1150 -2.5946 6.9593 13 6 4.2491 -1.6873 7.9239 14 6 4.6887 -1.9195 9.2302 15 1 4.7580 -1.1000 9.9303 16 6 5.0391 -3.2150 9.6315 17 7 4.9554 -4.2075 8.7835 18 14 5.6258 -3.5254 11.3776 19 1 4.5623 -3.1287 12.3351 20 1 5.9324 -4.9685 11.5477 21 1 6.8497 -2.7258 11.6381 22 7 3.8760 -0.4693 7.3840 23 6 3.8611 0.8306 8.0595 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.2539 0.6546 2.5589 28 1 2.9320 0.9513 2.0449 29 1 3.6542 -1.1129 3.2147 30 1 1.9758 -1.4090 3.7281 31 1 5.1984 -5.1046 9.0612 32 1 2.8888 0.9862 8.5268 33 1 4.6388 0.8522 8.8230 34 1 4.0449 1.6206 7.3314 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322721389.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:26 Heat of formation + Delta-G solvation = 49.728540 kcal Electronic energy + Delta-G solvation = -18551.880880 eV Core-core repulsion = 15419.749495 eV Total energy + Delta-G solvation = -3132.131385 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.089 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.54400 -39.02381 -36.52513 -33.73228 -33.38666 -32.63741 -30.43508 -29.33938 -26.55920 -25.63861 -24.79940 -23.02516 -20.87068 -20.42318 -18.64079 -17.41935 -17.24952 -16.21584 -16.04766 -15.44310 -14.83169 -14.62044 -14.54277 -14.20077 -13.60981 -13.39520 -13.12288 -13.05135 -12.86027 -12.53551 -12.34474 -12.25785 -12.08747 -11.70254 -11.40788 -11.36617 -11.30189 -10.96143 -10.44950 -10.33138 -10.05851 -9.76032 -9.63862 -8.74564 -8.47987 -8.41910 -6.91531 -6.67389 -4.61221 1.66695 2.31994 2.44895 2.69916 2.90704 3.04678 3.07046 3.32526 3.37197 3.84640 3.96527 4.20310 4.39509 4.45380 4.60127 4.87814 4.91357 5.12287 5.23825 5.29521 5.32663 5.50963 5.71275 5.78462 5.85117 6.00626 6.08833 6.71141 6.73391 6.85384 7.20592 7.21068 7.44410 7.85025 8.14150 8.66960 8.82037 10.24967 10.60088 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.034736 B = 0.003090 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.878141 B = 9058.464691 C = 9650.562262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.187 3.813 3 H 0.107 0.893 4 C 0.213 3.787 5 N -0.411 5.411 6 O -0.366 6.366 7 C 0.080 3.920 8 C -0.098 4.098 9 S -0.041 6.041 10 C 0.043 3.957 11 N -0.281 5.281 12 N -0.333 5.333 13 C 0.348 3.652 14 C -0.446 4.446 15 H 0.084 0.916 16 C 0.078 3.922 17 N -0.735 5.735 18 Si 0.921 3.079 19 H -0.265 1.265 20 H -0.276 1.276 21 H -0.265 1.265 22 N -0.515 5.515 23 C 0.102 3.898 24 H 0.074 0.926 25 H 0.081 0.919 26 H 0.075 0.925 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.100 0.900 30 H 0.101 0.899 31 H 0.281 0.719 32 H 0.056 0.944 33 H 0.078 0.922 34 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.815 12.509 -7.740 16.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.126 3.874 3 H 0.125 0.875 4 C -0.107 4.107 5 N -0.089 5.089 6 O -0.285 6.285 7 C 0.002 3.998 8 C -0.248 4.248 9 S 0.185 5.815 10 C -0.329 4.329 11 N -0.127 5.127 12 N -0.181 5.181 13 C 0.104 3.896 14 C -0.487 4.487 15 H 0.102 0.898 16 C -0.148 4.148 17 N -0.359 5.359 18 Si 0.745 3.255 19 H -0.189 1.189 20 H -0.201 1.201 21 H -0.190 1.190 22 N -0.218 5.218 23 C -0.043 4.043 24 H 0.093 0.907 25 H 0.100 0.900 26 H 0.094 0.906 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.118 0.882 30 H 0.120 0.880 31 H 0.092 0.908 32 H 0.075 0.925 33 H 0.097 0.903 34 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.342 11.088 -9.797 16.098 hybrid contribution 0.359 0.163 1.918 1.958 sum -5.982 11.252 -7.879 14.982 Atomic orbital electron populations 1.22270 0.92402 1.04510 1.03824 1.19192 0.94592 0.94483 0.79172 0.87530 1.28863 0.93369 0.93948 0.94481 1.81209 1.07981 1.07517 1.12197 1.88047 1.86584 1.34903 1.18917 1.22301 1.00603 0.92183 0.84708 1.23122 1.06983 1.01171 0.93479 1.84078 1.84499 1.09652 1.03303 1.25132 1.20362 0.97884 0.89477 1.74561 1.14369 1.01051 1.22720 1.75481 1.26169 1.21337 0.95077 1.21624 0.94087 0.78095 0.95834 1.18077 1.42477 0.95184 0.92922 0.89776 1.25806 0.94184 0.95277 0.99530 1.69997 1.30445 1.00680 1.34782 0.86166 0.79820 0.78215 0.81280 1.18935 1.20050 1.18955 1.46013 1.57929 1.08686 1.09169 1.21495 1.02168 0.83146 0.97532 0.90662 0.89997 0.90611 0.91520 0.91712 0.88177 0.88041 0.90839 0.92532 0.90347 0.91532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.94 9.48 37.16 0.35 -0.59 16 2 C 0.19 1.39 3.17 -29.52 -0.09 1.30 16 3 H 0.11 0.46 7.79 -51.93 -0.40 0.05 16 4 C 0.21 2.24 15.03 -20.76 -0.31 1.93 16 5 N -0.41 -5.50 18.54 42.15 0.78 -4.72 16 6 O -0.37 -3.97 9.95 -35.23 -0.35 -4.32 16 7 C 0.08 0.80 5.75 37.16 0.21 1.01 16 8 C -0.10 -1.46 5.59 37.16 0.21 -1.25 16 9 S -0.04 -0.68 21.78 -107.50 -2.34 -3.03 16 10 C 0.04 1.01 8.09 -87.28 -0.71 0.30 16 11 N -0.28 -7.65 11.62 30.89 0.36 -7.29 16 12 N -0.33 -9.98 10.48 31.26 0.33 -9.65 16 13 C 0.35 9.62 7.53 -154.81 -1.17 8.45 16 14 C -0.45 -11.67 9.04 -38.32 -0.35 -12.02 16 15 H 0.08 1.97 7.31 -52.48 -0.38 1.59 16 16 C 0.08 1.97 5.50 -17.30 -0.10 1.88 16 17 N -0.74 -20.11 11.94 55.56 0.66 -19.45 16 18 Si 0.92 18.30 29.56 -169.99 -5.03 13.27 16 19 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 20 H -0.28 -5.38 7.11 56.52 0.40 -4.97 16 21 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 22 N -0.52 -12.19 3.26 -123.18 -0.40 -12.59 16 23 C 0.10 1.78 10.87 59.85 0.65 2.43 16 24 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.08 0.36 7.87 -51.93 -0.41 -0.05 16 26 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 27 H 0.07 0.53 7.87 -51.93 -0.41 0.12 16 28 H 0.06 0.54 8.08 -51.93 -0.42 0.12 16 29 H 0.10 1.67 8.14 -51.92 -0.42 1.25 16 30 H 0.10 1.66 8.14 -51.91 -0.42 1.23 16 31 H 0.28 6.94 8.30 -40.82 -0.34 6.60 16 32 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.08 1.29 7.54 -51.93 -0.39 0.90 16 34 H 0.07 1.01 7.85 -51.93 -0.41 0.60 16 LS Contribution 321.81 15.07 4.85 4.85 Total: -1.00 -34.55 321.81 -6.50 -41.05 By element: Atomic # 1 Polarization: 2.50 SS G_CDS: -4.07 Total: -1.58 kcal Atomic # 6 Polarization: 4.74 SS G_CDS: -1.29 Total: 3.45 kcal Atomic # 7 Polarization: -55.43 SS G_CDS: 1.73 Total: -53.70 kcal Atomic # 8 Polarization: -3.97 SS G_CDS: -0.35 Total: -4.32 kcal Atomic # 14 Polarization: 18.30 SS G_CDS: -5.03 Total: 13.27 kcal Atomic # 16 Polarization: -0.68 SS G_CDS: -2.34 Total: -3.03 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -34.55 -6.50 -41.05 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322721389.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.783 kcal (2) G-P(sol) polarization free energy of solvation -34.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds