Wall clock time and date at job start Tue Mar 31 2020 05:51:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50702 * 119.99932 * 2 1 4 4 N 1.46500 * 109.47089 * 124.72256 * 3 2 1 5 5 C 1.35305 * 125.86996 * 124.71440 * 4 3 2 6 6 C 1.35347 * 106.17852 * 179.90155 * 5 4 3 7 7 C 1.50703 * 126.75404 * 180.12347 * 6 5 4 8 8 N 1.46496 * 109.46948 * 95.24878 * 7 6 5 9 9 C 1.34777 * 120.00245 * 179.97438 * 8 7 6 10 10 O 1.21289 * 119.99675 * 0.02562 * 9 8 7 11 11 C 1.50700 * 120.00365 * 179.97438 * 9 8 7 12 12 S 1.80997 * 109.47139 * 180.02562 * 11 9 8 13 13 C 1.76205 * 100.00076 * 180.02562 * 12 11 9 14 14 H 1.07993 * 119.99741 * 359.97438 * 13 12 11 15 15 C 1.38797 * 119.99988 * 180.02562 * 13 12 11 16 16 N 1.31626 * 119.99799 * 180.02562 * 15 13 12 17 17 Si 1.86801 * 120.00084 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.47043 * 90.00434 * 17 15 13 19 19 H 1.48498 * 109.46971 * 210.00499 * 17 15 13 20 20 H 1.48497 * 109.47100 * 330.00560 * 17 15 13 21 21 N 1.33776 * 106.49548 * 0.35304 * 6 5 4 22 22 N 1.28639 * 108.88329 * 359.77293 * 21 6 5 23 23 H 1.08002 * 119.99713 * 0.27722 * 1 2 3 24 24 H 1.07999 * 120.00046 * 180.27508 * 1 2 3 25 25 H 1.08002 * 119.99708 * 179.71665 * 2 1 3 26 26 H 1.09002 * 109.47005 * 244.72313 * 3 2 1 27 27 H 1.08999 * 109.47073 * 4.72010 * 3 2 1 28 28 H 1.08001 * 126.91155 * 0.02562 * 5 4 3 29 29 H 1.08998 * 109.47006 * 215.25166 * 7 6 5 30 30 H 1.08998 * 109.46888 * 335.25176 * 7 6 5 31 31 H 0.97002 * 120.00011 * 0.02562 * 8 7 6 32 32 H 1.09006 * 109.47208 * 300.00008 * 11 9 8 33 33 H 1.08998 * 109.46963 * 60.00525 * 11 9 8 34 34 H 0.97001 * 119.99913 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9891 1.3347 1.1353 5 6 4.3231 1.5494 1.0652 6 6 4.7812 1.4946 2.3376 7 6 6.2071 1.6744 2.7912 8 7 6.4198 3.0670 3.1930 9 6 7.6289 3.4629 3.6378 10 8 8.5410 2.6663 3.7049 11 6 7.8479 4.8957 4.0506 12 16 9.5603 5.1115 4.5955 13 6 9.5366 6.8245 5.0079 14 1 8.6287 7.3965 4.8865 15 6 10.6850 7.4388 5.4876 16 7 10.6671 8.7182 5.7961 17 14 12.2557 6.4494 5.6968 18 1 13.0480 6.5074 4.4422 19 1 13.0536 7.0176 6.8129 20 1 11.9139 5.0368 6.0016 21 7 3.7202 1.2445 3.1129 22 7 2.6736 1.1553 2.3702 23 1 -0.5400 0.9353 -0.0045 24 1 -0.5400 -0.9353 0.0045 25 1 1.8500 -0.9353 0.0046 26 1 2.6252 1.4004 -0.9293 27 1 1.3582 2.1318 0.0846 28 1 4.9050 1.7303 0.1735 29 1 6.4044 1.0175 3.6383 30 1 6.8828 1.4251 1.9730 31 1 5.6902 3.7040 3.1397 32 1 7.6512 5.5522 3.2029 33 1 7.1718 5.1455 4.8683 34 1 11.4696 9.1475 6.1318 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325912249.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:28 Heat of formation + Delta-G solvation = 84.475682 kcal Electronic energy + Delta-G solvation = -18213.137359 eV Core-core repulsion = 15082.512723 eV Total energy + Delta-G solvation = -3130.624636 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.089 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.62200 -39.20154 -36.65398 -34.89906 -33.11556 -32.41482 -31.74842 -29.52310 -27.75458 -26.24080 -25.53406 -22.57355 -21.84881 -20.58528 -20.47483 -18.15776 -17.63732 -16.80350 -16.35694 -15.91140 -15.77074 -15.44217 -14.95358 -14.91392 -14.27109 -13.87727 -13.75570 -13.30510 -13.18864 -12.78980 -12.71314 -12.15363 -11.99006 -11.80258 -11.24344 -11.19013 -10.98463 -10.62623 -10.54764 -10.22456 -9.90018 -9.77481 -9.35162 -9.00518 -8.94901 -8.47181 -6.88747 -6.26419 -3.97884 1.16482 1.28713 2.06003 2.20213 2.85724 3.00115 3.34773 3.42694 3.53331 3.73501 3.83848 3.98360 4.14383 4.35714 4.36483 4.46172 4.72159 4.75815 4.77528 5.11579 5.12720 5.17375 5.26836 5.56828 5.67281 5.78742 5.81043 5.83598 5.87272 6.05745 6.18455 6.49336 7.62335 7.96688 8.18348 8.44455 8.50140 9.19776 10.82808 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.053407 B = 0.002570 C = 0.002510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 524.154151 B =10892.741899 C =11152.996705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.184 4.184 3 C 0.145 3.855 4 N -0.291 5.291 5 C -0.030 4.030 6 C -0.037 4.037 7 C 0.211 3.789 8 N -0.732 5.732 9 C 0.533 3.467 10 O -0.519 6.519 11 C -0.123 4.123 12 S -0.141 6.141 13 C -0.521 4.521 14 H 0.088 0.912 15 C 0.095 3.905 16 N -0.881 5.881 17 Si 0.857 3.143 18 H -0.267 1.267 19 H -0.275 1.275 20 H -0.235 1.235 21 N -0.252 5.252 22 N -0.077 5.077 23 H 0.104 0.896 24 H 0.109 0.891 25 H 0.118 0.882 26 H 0.116 0.884 27 H 0.104 0.896 28 H 0.194 0.806 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.401 0.599 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.468 -15.768 -15.653 29.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.203 4.203 3 C 0.024 3.976 4 N -0.084 5.084 5 C -0.182 4.182 6 C -0.175 4.175 7 C 0.085 3.915 8 N -0.387 5.387 9 C 0.319 3.681 10 O -0.394 6.394 11 C -0.274 4.274 12 S 0.085 5.915 13 C -0.668 4.668 14 H 0.106 0.894 15 C -0.114 4.114 16 N -0.517 5.517 17 Si 0.682 3.318 18 H -0.192 1.192 19 H -0.200 1.200 20 H -0.159 1.159 21 N -0.120 5.120 22 N -0.057 5.057 23 H 0.122 0.878 24 H 0.127 0.873 25 H 0.136 0.864 26 H 0.134 0.866 27 H 0.123 0.877 28 H 0.211 0.789 29 H 0.104 0.896 30 H 0.104 0.896 31 H 0.234 0.766 32 H 0.115 0.885 33 H 0.116 0.884 34 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -19.005 -17.224 -14.501 29.464 hybrid contribution -0.002 1.313 -0.915 1.600 sum -19.007 -15.911 -15.415 29.190 Atomic orbital electron populations 1.24023 0.95453 1.02966 0.95859 1.22837 0.96420 0.97247 1.03780 1.21214 0.92118 0.98513 0.85724 1.47466 1.07205 1.45713 1.08044 1.23535 0.84750 1.08365 1.01520 1.21990 0.97147 1.08172 0.90217 1.19314 0.86918 0.84271 1.01003 1.45963 1.13263 1.10750 1.68703 1.20262 0.81612 0.90064 0.76136 1.90707 1.41676 1.54614 1.52362 1.23273 1.04571 0.94814 1.04741 1.84772 1.07461 1.14671 1.84576 1.22324 1.01971 0.92032 1.50523 0.89391 1.24721 0.98621 0.94551 0.93495 1.69940 1.29618 1.09764 1.42422 0.86725 0.83372 0.82742 0.78960 1.19233 1.19978 1.15861 1.75166 0.95514 1.15220 1.26065 1.78368 1.21373 1.18938 0.87012 0.87799 0.87274 0.86387 0.86623 0.87744 0.78860 0.89614 0.89640 0.76558 0.88495 0.88361 0.91970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.52 14.32 29.01 0.42 -0.10 16 2 C -0.18 -0.80 9.63 -36.03 -0.35 -1.15 16 3 C 0.14 0.57 6.90 -5.19 -0.04 0.53 16 4 N -0.29 -2.35 3.43 -62.44 -0.21 -2.57 16 5 C -0.03 -0.23 11.50 -17.05 -0.20 -0.43 16 6 C -0.04 -0.40 6.61 -82.77 -0.55 -0.95 16 7 C 0.21 2.47 6.23 -5.19 -0.03 2.44 16 8 N -0.73 -9.73 5.55 -61.47 -0.34 -10.08 16 9 C 0.53 9.51 7.85 -10.99 -0.09 9.42 16 10 O -0.52 -11.11 15.86 5.55 0.09 -11.03 16 11 C -0.12 -2.41 6.16 36.01 0.22 -2.18 16 12 S -0.14 -3.60 18.55 -107.50 -1.99 -5.59 16 13 C -0.52 -15.10 10.04 30.94 0.31 -14.79 16 14 H 0.09 2.66 8.03 -52.49 -0.42 2.24 16 15 C 0.09 2.79 5.50 -17.43 -0.10 2.69 16 16 N -0.88 -26.73 13.97 55.49 0.78 -25.95 16 17 Si 0.86 21.90 27.74 -169.99 -4.72 17.18 16 18 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.23 -5.99 6.74 56.52 0.38 -5.61 16 21 N -0.25 -3.37 12.41 33.29 0.41 -2.95 16 22 N -0.08 -0.92 12.92 60.35 0.78 -0.14 16 23 H 0.10 0.27 7.84 -52.49 -0.41 -0.15 16 24 H 0.11 0.30 8.06 -52.49 -0.42 -0.12 16 25 H 0.12 0.56 8.06 -52.49 -0.42 0.14 16 26 H 0.12 0.12 8.07 -51.93 -0.42 -0.30 16 27 H 0.10 0.30 7.79 -51.93 -0.40 -0.10 16 28 H 0.19 0.77 8.06 -52.49 -0.42 0.35 16 29 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.40 4.56 8.46 -40.82 -0.35 4.22 16 32 H 0.10 1.74 8.14 -51.91 -0.42 1.31 16 33 H 0.10 1.82 8.14 -51.92 -0.42 1.39 16 34 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 321.37 15.07 4.84 4.84 Total: -1.00 -36.76 321.37 -4.88 -41.63 By element: Atomic # 1 Polarization: 3.28 SS G_CDS: -4.12 Total: -0.84 kcal Atomic # 6 Polarization: -4.12 SS G_CDS: -0.39 Total: -4.52 kcal Atomic # 7 Polarization: -43.10 SS G_CDS: 1.41 Total: -41.69 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: 0.09 Total: -11.03 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.72 Total: 17.18 kcal Atomic # 16 Polarization: -3.60 SS G_CDS: -1.99 Total: -5.59 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -36.76 -4.88 -41.63 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325912249.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.110 kcal (2) G-P(sol) polarization free energy of solvation -36.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds