Wall clock time and date at job start Tue Mar 31 2020 06:23:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36758 * 127.14384 * 2 1 4 4 C 1.50699 * 126.34122 * 0.03451 * 3 2 1 5 5 C 1.47206 * 109.46910 * 269.71082 * 4 3 2 6 6 N 4.17631 * 92.20869 * 323.91986 * 2 1 3 7 7 N 1.30300 * 107.31832 * 179.77023 * 3 2 1 8 8 N 1.28531 * 110.07545 * 0.22848 * 7 3 2 9 9 C 1.31284 * 109.85689 * 0.02562 * 8 7 3 10 10 S 1.76201 * 126.48009 * 180.02562 * 9 8 7 11 11 C 1.80997 * 100.00049 * 359.97278 * 10 9 8 12 12 C 1.53007 * 109.47026 * 179.97438 * 11 10 9 13 13 O 1.42896 * 109.47128 * 180.02562 * 12 11 10 14 14 C 1.42900 * 113.99989 * 180.02562 * 13 12 11 15 15 C 1.50699 * 109.47336 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99613 * 359.97438 * 15 14 13 17 17 C 1.37875 * 120.00120 * 179.97438 * 15 14 13 18 18 N 1.31520 * 120.00083 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99956 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46860 * 90.00182 * 19 17 15 21 21 H 1.48499 * 109.47065 * 210.00045 * 19 17 15 22 22 H 1.48498 * 109.47120 * 330.00094 * 19 17 15 23 23 H 1.09008 * 109.47035 * 89.99677 * 1 2 3 24 24 H 1.08996 * 109.47462 * 210.00198 * 1 2 3 25 25 H 1.09003 * 109.47056 * 330.00462 * 1 2 3 26 26 H 1.08996 * 109.47258 * 149.70829 * 4 3 2 27 27 H 1.09000 * 109.47247 * 29.70990 * 4 3 2 28 28 H 1.09001 * 109.47432 * 299.99760 * 11 10 9 29 29 H 1.09002 * 109.47248 * 60.00472 * 11 10 9 30 30 H 1.08997 * 109.47486 * 300.00871 * 12 11 10 31 31 H 1.09008 * 109.46768 * 59.99745 * 12 11 10 32 32 H 1.09007 * 109.46865 * 299.99869 * 14 13 12 33 33 H 1.09006 * 109.47579 * 59.99581 * 14 13 12 34 34 H 0.97001 * 119.99872 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2908 1.0901 0.0000 4 6 1.8624 2.5349 0.0007 5 6 1.7290 3.0078 -1.3869 6 7 1.6260 3.3728 -2.4577 7 7 3.5166 0.6482 0.0050 8 7 3.5222 -0.6371 0.0033 9 6 2.2894 -1.0884 -0.0035 10 16 1.7927 -2.7790 -0.0076 11 6 3.4143 -3.5830 -0.0008 12 6 3.2304 -5.1020 -0.0026 13 8 4.5106 -5.7367 0.0034 14 6 4.4514 -7.1645 0.0016 15 6 5.8501 -7.7253 0.0089 16 1 6.6993 -7.0581 0.0139 17 6 6.0456 -9.0902 0.0092 18 7 5.0114 -9.9027 0.0037 19 14 7.7795 -9.7853 0.0175 20 1 8.2319 -9.9702 1.4198 21 1 7.7912 -11.0945 -0.6832 22 1 8.6936 -8.8437 -0.6775 23 1 -0.3633 0.0001 -1.0277 24 1 -0.3634 -0.8899 0.5138 25 1 -0.3633 0.8901 0.5138 26 1 2.6101 3.1353 0.5189 27 1 0.9036 2.6294 0.5105 28 1 3.9722 -3.2832 -0.8879 29 1 3.9638 -3.2850 0.8922 30 1 2.6725 -5.4015 0.8846 31 1 2.6805 -5.4003 -0.8953 32 1 3.9183 -7.5071 0.8886 33 1 3.9274 -7.5055 -0.8914 34 1 5.1490 -10.8629 0.0035 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327801489.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:35 Heat of formation + Delta-G solvation = 56.181163 kcal Electronic energy + Delta-G solvation = -18161.256276 eV Core-core repulsion = 15029.404697 eV Total energy + Delta-G solvation = -3131.851579 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.089 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.29340 -37.29690 -36.95278 -35.49129 -33.16273 -32.89510 -31.09107 -29.09425 -27.98214 -27.05456 -23.44640 -22.70597 -22.29360 -21.67138 -18.66432 -17.95211 -16.86952 -16.56444 -16.41768 -15.97605 -15.56407 -15.45526 -14.96898 -14.55194 -13.99792 -13.70857 -13.57591 -13.47376 -13.33235 -13.14431 -12.77244 -12.37192 -12.08515 -11.92570 -11.31326 -11.28202 -10.87428 -10.82803 -10.80240 -10.67426 -10.45336 -10.25598 -10.10526 -9.16997 -8.92571 -8.26615 -7.91344 -6.14453 -4.16475 0.72960 1.11713 1.85051 1.98529 2.20477 2.29187 2.45243 3.29940 3.34959 3.40836 3.41043 3.73780 4.03874 4.22354 4.33134 4.51051 4.68420 4.75999 4.84831 4.92524 5.11863 5.22348 5.26854 5.49887 5.53744 5.70074 5.99444 6.10494 6.18353 6.96528 7.00345 7.34734 7.75319 8.08121 8.24867 8.45702 8.95745 9.48459 10.96985 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.040498 B = 0.002558 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.227442 B =10945.272885 C =11364.537393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.461 5.461 3 C 0.163 3.837 4 C 0.074 3.926 5 C 0.203 3.797 6 N -0.410 5.410 7 N -0.260 5.260 8 N -0.283 5.283 9 C 0.173 3.827 10 S 0.012 5.988 11 C -0.099 4.099 12 C 0.078 3.922 13 O -0.388 6.388 14 C 0.196 3.804 15 C -0.516 4.516 16 H 0.068 0.932 17 C 0.057 3.943 18 N -0.898 5.898 19 Si 0.910 3.090 20 H -0.278 1.278 21 H -0.285 1.285 22 H -0.271 1.271 23 H 0.087 0.913 24 H 0.099 0.901 25 H 0.097 0.903 26 H 0.148 0.852 27 H 0.130 0.870 28 H 0.105 0.895 29 H 0.106 0.894 30 H 0.048 0.952 31 H 0.048 0.952 32 H 0.008 0.992 33 H 0.008 0.992 34 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.425 22.655 3.347 27.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.156 5.156 3 C -0.108 4.108 4 C 0.032 3.968 5 C -0.116 4.116 6 N -0.087 5.087 7 N -0.101 5.101 8 N -0.128 5.128 9 C -0.202 4.202 10 S 0.239 5.761 11 C -0.248 4.248 12 C -0.001 4.001 13 O -0.308 6.308 14 C 0.121 3.879 15 C -0.555 4.555 16 H 0.086 0.914 17 C -0.145 4.145 18 N -0.537 5.537 19 Si 0.737 3.263 20 H -0.204 1.204 21 H -0.211 1.211 22 H -0.195 1.195 23 H 0.105 0.895 24 H 0.118 0.882 25 H 0.116 0.884 26 H 0.166 0.834 27 H 0.148 0.852 28 H 0.124 0.876 29 H 0.124 0.876 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.026 0.974 33 H 0.026 0.974 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -14.042 22.616 1.744 26.678 hybrid contribution 0.367 -0.267 0.412 0.613 sum -13.675 22.349 2.156 26.290 Atomic orbital electron populations 1.22249 0.74613 1.05836 1.04798 1.46271 1.08849 1.04814 1.55632 1.24185 0.87397 0.90662 1.08553 1.17312 1.06182 0.86795 0.86505 1.28639 0.93922 0.94308 0.94744 1.81282 1.08142 1.07912 1.11323 1.74009 1.16753 1.03464 1.15877 1.74850 1.15432 1.02479 1.19990 1.26904 0.90042 0.96279 1.06935 1.85340 1.12598 0.85871 1.92246 1.23556 0.94300 0.98269 1.08674 1.21787 0.89233 0.88658 1.00425 1.87886 1.24130 1.23520 1.95267 1.20283 0.98392 0.73494 0.95696 1.21045 0.91910 0.91433 1.51072 0.91376 1.24953 0.97983 0.96518 0.95026 1.69961 1.29868 1.03524 1.50394 0.86306 0.83513 0.78231 0.78288 1.20397 1.21054 1.19549 0.89481 0.88223 0.88426 0.83418 0.85246 0.87620 0.87555 0.93342 0.93372 0.97383 0.97389 0.92580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.26 10.91 59.85 0.65 0.91 16 2 N -0.46 -4.02 3.21 -120.90 -0.39 -4.41 16 3 C 0.16 1.44 7.28 -153.99 -1.12 0.32 16 4 C 0.07 0.27 6.08 -30.67 -0.19 0.08 16 5 C 0.20 1.48 15.41 -20.76 -0.32 1.16 16 6 N -0.41 -4.44 18.54 42.15 0.78 -3.65 16 7 N -0.26 -3.49 12.18 32.99 0.40 -3.09 16 8 N -0.28 -4.28 11.60 30.68 0.36 -3.93 16 9 C 0.17 2.13 8.07 -88.34 -0.71 1.42 16 10 S 0.01 0.13 21.81 -107.50 -2.34 -2.21 16 11 C -0.10 -1.49 5.60 37.16 0.21 -1.28 16 12 C 0.08 1.39 5.94 37.16 0.22 1.61 16 13 O -0.39 -9.19 10.33 -35.23 -0.36 -9.55 16 14 C 0.20 5.28 5.69 36.01 0.20 5.48 16 15 C -0.52 -15.11 9.43 -34.44 -0.32 -15.44 16 16 H 0.07 1.99 7.81 -52.49 -0.41 1.58 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 18 N -0.90 -26.61 13.29 55.43 0.74 -25.87 16 19 Si 0.91 21.77 29.54 -169.99 -5.02 16.75 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 23 H 0.09 0.29 8.14 -51.92 -0.42 -0.13 16 24 H 0.10 0.34 7.86 -51.93 -0.41 -0.07 16 25 H 0.10 0.04 7.25 -51.93 -0.38 -0.34 16 26 H 0.15 0.20 8.14 -51.93 -0.42 -0.22 16 27 H 0.13 -0.10 7.26 -51.93 -0.38 -0.47 16 28 H 0.11 1.67 8.14 -51.92 -0.42 1.24 16 29 H 0.11 1.64 8.14 -51.91 -0.42 1.22 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.05 0.81 8.14 -51.92 -0.42 0.39 16 32 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 325.32 15.07 4.90 4.90 Total: -1.00 -36.96 325.32 -6.50 -43.46 By element: Atomic # 1 Polarization: -4.11 SS G_CDS: -4.09 Total: -8.20 kcal Atomic # 6 Polarization: -2.73 SS G_CDS: -1.47 Total: -4.21 kcal Atomic # 7 Polarization: -42.83 SS G_CDS: 1.89 Total: -40.95 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: -0.36 Total: -9.55 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 16 Polarization: 0.13 SS G_CDS: -2.34 Total: -2.21 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -36.96 -6.50 -43.46 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327801489.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.646 kcal (2) G-P(sol) polarization free energy of solvation -36.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds