Wall clock time and date at job start Tue Mar 31 2020 05:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38135 * 120.48557 * 2 1 4 4 N 1.31822 * 120.91308 * 180.02562 * 3 2 1 5 5 C 1.31914 * 122.03455 * 359.97438 * 4 3 2 6 6 Cl 1.73596 * 119.56957 * 179.97438 * 5 4 3 7 7 C 1.38308 * 120.86090 * 0.02562 * 5 4 3 8 8 C 1.39787 * 118.98816 * 359.68769 * 7 5 4 9 9 C 1.48147 * 120.91206 * 180.31379 * 8 7 5 10 10 O 1.21515 * 119.99602 * 186.12887 * 9 8 7 11 11 N 1.34770 * 120.00537 * 6.13224 * 9 8 7 12 12 C 1.46502 * 120.00109 * 180.02562 * 11 9 8 13 13 C 1.53006 * 109.46761 * 179.97438 * 12 11 9 14 14 C 1.53005 * 109.46731 * 179.97438 * 13 12 11 15 15 C 1.50705 * 109.46944 * 180.02562 * 14 13 12 16 16 H 1.08000 * 119.99884 * 359.97438 * 15 14 13 17 17 C 1.37874 * 119.99792 * 180.02562 * 15 14 13 18 18 N 1.31510 * 120.00241 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99591 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47107 * 90.00476 * 19 17 15 21 21 H 1.48500 * 109.46927 * 209.99802 * 19 17 15 22 22 H 1.48499 * 109.47223 * 329.99940 * 19 17 15 23 23 H 1.08998 * 109.47465 * 96.28542 * 1 2 3 24 24 H 1.09004 * 109.47002 * 336.28294 * 1 2 3 25 25 H 1.09005 * 109.47443 * 216.29250 * 1 2 3 26 26 H 1.07994 * 119.54132 * 0.02576 * 3 2 1 27 27 H 1.07997 * 120.50687 * 179.97438 * 7 5 4 28 28 H 0.97004 * 119.99732 * 359.97438 * 11 9 8 29 29 H 1.08997 * 109.47208 * 299.99397 * 12 11 9 30 30 H 1.08997 * 109.47237 * 60.00097 * 12 11 9 31 31 H 1.08997 * 109.47119 * 299.99883 * 13 12 11 32 32 H 1.08996 * 109.47338 * 60.00296 * 13 12 11 33 33 H 1.08997 * 109.47487 * 299.99981 * 14 13 12 34 34 H 1.08996 * 109.46705 * 60.00230 * 14 13 12 35 35 H 0.96998 * 120.00263 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2077 1.1904 0.0000 4 7 3.5259 1.2002 -0.0005 5 6 4.2339 0.0872 -0.0005 6 17 5.9677 0.1748 -0.0019 7 6 3.6130 -1.1486 -0.0006 8 6 2.2163 -1.2050 0.0061 9 6 1.5071 -2.5057 0.0133 10 8 0.2971 -2.5385 -0.0933 11 7 2.2039 -3.6525 0.1382 12 6 1.5025 -4.9388 0.1448 13 6 2.5184 -6.0727 0.2970 14 6 1.7859 -7.4160 0.3045 15 6 2.7864 -8.5329 0.4551 16 1 3.8394 -8.3073 0.5368 17 6 2.3575 -9.8429 0.4875 18 7 1.0754 -10.1177 0.3874 19 14 3.5978 -11.2273 0.6734 20 1 3.8016 -11.5190 2.1152 21 1 3.0886 -12.4432 -0.0103 22 1 4.8891 -10.8204 0.0633 23 1 -0.3634 -0.1125 -1.0214 24 1 -0.3633 0.9409 0.4134 25 1 -0.3634 -0.8283 0.6083 26 1 1.6682 2.1259 0.0004 27 1 4.1983 -2.0563 -0.0010 28 1 3.1698 -3.6264 0.2230 29 1 0.8002 -4.9654 0.9779 30 1 0.9595 -5.0613 -0.7923 31 1 3.2205 -6.0459 -0.5363 32 1 3.0618 -5.9504 1.2340 33 1 1.0841 -7.4426 1.1381 34 1 1.2423 -7.5385 -0.6322 35 1 0.7736 -11.0392 0.4106 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333277290.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:26 Heat of formation + Delta-G solvation = -25.769473 kcal Electronic energy + Delta-G solvation = -18691.193528 eV Core-core repulsion = 15521.451846 eV Total energy + Delta-G solvation = -3169.741682 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.10371 -39.23916 -37.01489 -35.72528 -33.71111 -33.62074 -32.52943 -31.08111 -27.82941 -26.80325 -25.07462 -23.35403 -22.36862 -21.03195 -20.40434 -18.28571 -17.38455 -16.42157 -15.95730 -15.74608 -15.67620 -15.28620 -14.91039 -14.48829 -14.21429 -13.96067 -13.67260 -13.22624 -12.74408 -12.35543 -12.11683 -11.90309 -11.84702 -11.83450 -11.61906 -10.94895 -10.83689 -10.64955 -10.50437 -10.31200 -9.95485 -9.79682 -9.44666 -9.21309 -9.17861 -8.95974 -8.41826 -6.06421 -4.09807 0.26952 0.46508 1.42345 2.62326 3.00786 3.28028 3.34032 3.34752 3.37381 3.96901 4.24079 4.32955 4.40392 4.49341 4.62165 5.00125 5.15803 5.27018 5.29624 5.51151 5.55982 5.65302 5.67600 5.92445 6.03905 6.11881 6.32072 6.48727 6.68834 6.90270 7.22256 7.42352 7.57335 7.68878 7.91582 8.05922 8.32514 8.96712 9.54842 11.04829 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.021681 B = 0.003116 C = 0.002734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.149618 B = 8982.599484 C =10238.352171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.074 4.074 3 C 0.113 3.887 4 N -0.461 5.461 5 C 0.161 3.839 6 Cl -0.026 7.026 7 C -0.119 4.119 8 C -0.078 4.078 9 C 0.552 3.448 10 O -0.522 6.522 11 N -0.714 5.714 12 C 0.116 3.884 13 C -0.122 4.122 14 C 0.024 3.976 15 C -0.524 4.524 16 H 0.056 0.944 17 C 0.057 3.943 18 N -0.893 5.893 19 Si 0.893 3.107 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.274 1.274 23 H 0.082 0.918 24 H 0.065 0.935 25 H 0.101 0.899 26 H 0.173 0.827 27 H 0.151 0.849 28 H 0.399 0.601 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.019 0.981 34 H 0.020 0.980 35 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.876 22.553 -0.716 22.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.077 4.077 3 C -0.045 4.045 4 N -0.172 5.172 5 C -0.003 4.003 6 Cl 0.003 6.997 7 C -0.140 4.140 8 C -0.089 4.089 9 C 0.338 3.662 10 O -0.400 6.400 11 N -0.365 5.365 12 C -0.006 4.006 13 C -0.160 4.160 14 C -0.013 4.013 15 C -0.562 4.562 16 H 0.074 0.926 17 C -0.144 4.144 18 N -0.532 5.532 19 Si 0.721 3.279 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.199 1.199 23 H 0.101 0.899 24 H 0.084 0.916 25 H 0.119 0.881 26 H 0.190 0.810 27 H 0.168 0.832 28 H 0.234 0.766 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.038 0.962 34 H 0.038 0.962 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.479 23.122 -0.799 23.395 hybrid contribution 1.023 -1.583 0.125 1.889 sum 4.502 21.539 -0.674 22.014 Atomic orbital electron populations 1.21035 0.88275 1.03875 1.04321 1.21243 0.99010 0.92146 0.95280 1.22671 0.87844 0.97958 0.96031 1.66881 1.08702 1.30615 1.11000 1.21465 0.87883 0.89663 1.01264 1.98423 1.06189 1.98607 1.96504 1.22048 0.94074 0.98283 0.99635 1.20361 0.92726 0.94825 1.00983 1.17990 0.87075 0.83342 0.77820 1.90752 1.13163 1.86828 1.49213 1.46180 1.11029 1.06534 1.72762 1.21764 0.96116 0.80357 1.02403 1.21920 0.97588 0.95580 1.00959 1.19027 0.95683 0.88908 0.97708 1.21190 0.93443 0.91110 1.50476 0.92613 1.25024 0.95202 0.98972 0.95218 1.69957 1.13683 1.19374 1.50224 0.86578 0.81447 0.81676 0.78207 1.20630 1.21185 1.19860 0.89910 0.91561 0.88111 0.81043 0.83161 0.76633 0.91268 0.91267 0.92571 0.92577 0.96223 0.96214 0.92877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.08 8.85 36.00 0.32 -0.76 16 2 C -0.07 -0.74 5.93 -104.07 -0.62 -1.36 16 3 C 0.11 1.01 10.83 -17.59 -0.19 0.82 16 4 N -0.46 -5.00 10.31 -10.41 -0.11 -5.11 16 5 C 0.16 1.70 7.27 -17.49 -0.13 1.57 16 6 Cl -0.03 -0.25 29.10 -51.86 -1.51 -1.76 16 7 C -0.12 -1.18 9.37 -38.98 -0.37 -1.55 16 8 C -0.08 -0.87 5.91 -104.65 -0.62 -1.49 16 9 C 0.55 7.50 7.74 -12.19 -0.09 7.40 16 10 O -0.52 -8.45 13.52 5.35 0.07 -8.38 16 11 N -0.71 -9.38 5.51 -61.15 -0.34 -9.72 16 12 C 0.12 1.87 5.67 -4.04 -0.02 1.85 16 13 C -0.12 -2.26 5.27 -26.73 -0.14 -2.40 16 14 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 15 C -0.52 -14.29 9.11 -34.44 -0.31 -14.60 16 16 H 0.06 1.46 7.74 -52.49 -0.41 1.06 16 17 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 18 N -0.89 -26.35 13.29 55.43 0.74 -25.61 16 19 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 23 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.07 0.42 8.06 -51.93 -0.42 0.00 16 25 H 0.10 1.15 5.92 -51.93 -0.31 0.85 16 26 H 0.17 0.98 8.06 -52.49 -0.42 0.55 16 27 H 0.15 1.18 6.58 -52.49 -0.35 0.83 16 28 H 0.40 4.20 6.65 -40.82 -0.27 3.93 16 29 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 317.28 15.07 4.78 4.78 Total: -1.00 -31.21 317.28 -8.06 -39.27 By element: Atomic # 1 Polarization: 3.20 SS G_CDS: -4.27 Total: -1.06 kcal Atomic # 6 Polarization: -6.13 SS G_CDS: -2.41 Total: -8.54 kcal Atomic # 7 Polarization: -40.73 SS G_CDS: 0.29 Total: -40.44 kcal Atomic # 8 Polarization: -8.45 SS G_CDS: 0.07 Total: -8.38 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 17 Polarization: -0.25 SS G_CDS: -1.51 Total: -1.76 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -31.21 -8.06 -39.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333277290.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.502 kcal (2) G-P(sol) polarization free energy of solvation -31.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds