Wall clock time and date at job start Tue Mar 31 2020 05:21:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38133 * 120.48290 * 2 1 4 4 N 1.31822 * 120.91490 * 180.29786 * 3 2 1 5 5 C 1.31921 * 122.03041 * 359.42794 * 4 3 2 6 6 Cl 1.73594 * 119.57146 * 180.27020 * 5 4 3 7 7 C 1.38301 * 120.85742 * 0.57157 * 5 4 3 8 8 C 1.39776 * 118.99557 * 359.72345 * 7 5 4 9 9 C 1.48152 * 120.91980 * 180.02562 * 8 7 5 10 10 O 1.21515 * 120.00660 * 126.87647 * 9 8 7 11 11 N 1.34781 * 119.99831 * 306.87101 * 9 8 7 12 12 C 1.46500 * 119.99629 * 4.22525 * 11 9 8 13 13 C 1.46494 * 120.00187 * 184.22265 * 11 9 8 14 14 H 1.08998 * 109.47059 * 0.02562 * 13 11 9 15 15 C 1.52999 * 109.47295 * 120.00214 * 13 11 9 16 16 C 1.50699 * 109.46961 * 240.00284 * 13 11 9 17 17 H 1.08002 * 120.00440 * 0.02562 * 16 13 11 18 18 C 1.37884 * 119.99981 * 179.97438 * 16 13 11 19 19 N 1.31509 * 119.99876 * 0.02562 * 18 16 13 20 20 Si 1.86796 * 119.99921 * 179.97438 * 18 16 13 21 21 H 1.48493 * 109.47445 * 0.02562 * 20 18 16 22 22 H 1.48508 * 109.47200 * 120.00278 * 20 18 16 23 23 H 1.48509 * 109.47238 * 239.99784 * 20 18 16 24 24 H 1.09003 * 109.47279 * 85.30831 * 1 2 3 25 25 H 1.09005 * 109.47454 * 205.30930 * 1 2 3 26 26 H 1.08998 * 109.47529 * 325.30604 * 1 2 3 27 27 H 1.07997 * 119.54408 * 0.02562 * 3 2 1 28 28 H 1.08008 * 120.50401 * 179.70205 * 7 5 4 29 29 H 1.09003 * 109.47047 * 84.54484 * 12 11 9 30 30 H 1.09005 * 109.47371 * 204.54246 * 12 11 9 31 31 H 1.09003 * 109.47534 * 324.53954 * 12 11 9 32 32 H 1.09002 * 109.47162 * 300.00510 * 15 13 11 33 33 H 1.09006 * 109.46919 * 59.99703 * 15 13 11 34 34 H 1.08997 * 109.47034 * 179.97438 * 15 13 11 35 35 H 0.97001 * 119.99989 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2076 1.1904 0.0000 4 7 3.5258 1.2003 -0.0059 5 6 4.2339 0.0873 -0.0008 6 17 5.9677 0.1749 -0.0020 7 6 3.6130 -1.1485 -0.0009 8 6 2.2164 -1.2050 -0.0004 9 6 1.5071 -2.5057 0.0001 10 8 0.6620 -2.7367 0.8422 11 7 1.7992 -3.4329 -0.9335 12 6 2.8813 -3.1923 -1.8913 13 6 1.0346 -4.6812 -0.9905 14 1 0.2779 -4.6799 -0.2059 15 6 0.3534 -4.8003 -2.3552 16 6 1.9650 -5.8496 -0.7898 17 1 3.0202 -5.6794 -0.6348 18 6 1.4689 -7.1361 -0.8029 19 7 0.1840 -7.3434 -0.9910 20 14 2.6222 -8.5844 -0.5548 21 1 4.0084 -8.0866 -0.3657 22 1 2.2037 -9.3504 0.6467 23 1 2.5713 -9.4677 -1.7475 24 1 -0.3634 0.0841 -1.0242 25 1 -0.3634 -0.9290 0.4393 26 1 -0.3634 0.8449 0.5849 27 1 1.6681 2.1259 0.0004 28 1 4.1984 -2.0562 -0.0015 29 1 3.8325 -3.4828 -1.4453 30 1 2.7072 -3.7814 -2.7918 31 1 2.9093 -2.1337 -2.1496 32 1 -0.3195 -3.9551 -2.5004 33 1 1.1099 -4.8013 -3.1401 34 1 -0.2151 -5.7293 -2.3977 35 1 -0.1651 -8.2484 -0.9999 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336240152.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:33 Heat of formation + Delta-G solvation = -6.097088 kcal Electronic energy + Delta-G solvation = -20040.708646 eV Core-core repulsion = 16871.820022 eV Total energy + Delta-G solvation = -3168.888624 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.76043 -38.80324 -36.75804 -35.59887 -33.54978 -33.08674 -32.00091 -29.41382 -27.34218 -26.40463 -25.33495 -24.64934 -22.58398 -21.22358 -19.10348 -17.39191 -17.07813 -16.37233 -15.96531 -15.44555 -15.07417 -14.78425 -14.36716 -14.22132 -13.82075 -13.18213 -13.02912 -12.95554 -12.71107 -12.07638 -11.80438 -11.70458 -11.65102 -11.54819 -11.38995 -11.14496 -10.89196 -10.81417 -10.35471 -10.26346 -10.07122 -9.82236 -9.27104 -9.13434 -8.88855 -8.51376 -7.79175 -6.15304 -4.23560 0.74222 0.81711 1.68467 3.04410 3.21884 3.30379 3.32944 3.48676 3.67592 4.30165 4.34546 4.62214 4.68929 4.76935 4.96827 5.16602 5.35232 5.47605 5.60577 5.62249 5.64382 5.89023 5.92951 6.17878 6.24165 6.37661 6.65022 6.69985 6.92372 7.24527 7.36015 7.52794 7.61554 7.89515 8.06626 8.31772 8.64810 8.83808 9.43208 10.90165 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.020424 B = 0.005103 C = 0.004348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.623859 B = 5485.627771 C = 6438.261020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.089 4.089 3 C 0.113 3.887 4 N -0.470 5.470 5 C 0.163 3.837 6 Cl -0.033 7.033 7 C -0.120 4.120 8 C -0.057 4.057 9 C 0.548 3.452 10 O -0.532 6.532 11 N -0.578 5.578 12 C 0.082 3.918 13 C 0.257 3.743 14 H 0.066 0.934 15 C -0.148 4.148 16 C -0.527 4.527 17 H 0.061 0.939 18 C 0.066 3.934 19 N -0.887 5.887 20 Si 0.899 3.101 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.283 1.283 24 H 0.076 0.924 25 H 0.096 0.904 26 H 0.074 0.926 27 H 0.169 0.831 28 H 0.152 0.848 29 H 0.052 0.948 30 H 0.081 0.919 31 H 0.050 0.950 32 H 0.012 0.988 33 H 0.031 0.969 34 H 0.096 0.904 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.961 14.084 -1.669 15.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.092 4.092 3 C -0.045 4.045 4 N -0.181 5.181 5 C -0.001 4.001 6 Cl -0.004 7.004 7 C -0.142 4.142 8 C -0.069 4.069 9 C 0.333 3.667 10 O -0.411 6.411 11 N -0.308 5.308 12 C -0.062 4.062 13 C 0.157 3.843 14 H 0.084 0.916 15 C -0.206 4.206 16 C -0.566 4.566 17 H 0.079 0.921 18 C -0.137 4.137 19 N -0.525 5.525 20 Si 0.727 3.273 21 H -0.198 1.198 22 H -0.209 1.209 23 H -0.209 1.209 24 H 0.095 0.905 25 H 0.115 0.885 26 H 0.093 0.907 27 H 0.186 0.814 28 H 0.170 0.830 29 H 0.071 0.929 30 H 0.100 0.900 31 H 0.069 0.931 32 H 0.031 0.969 33 H 0.051 0.949 34 H 0.115 0.885 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.982 14.548 -1.277 15.430 hybrid contribution 0.585 -1.566 0.042 1.673 sum 5.566 12.982 -1.236 14.179 Atomic orbital electron populations 1.20999 0.89021 1.05496 1.03053 1.21084 0.98527 0.92274 0.97332 1.22519 0.87886 0.97726 0.96339 1.66837 1.08592 1.30585 1.12084 1.21419 0.87408 0.89731 1.01535 1.98401 1.06797 1.98624 1.96594 1.22079 0.94068 0.98215 0.99815 1.20557 0.93062 0.95372 0.97897 1.18003 0.83110 0.82931 0.82666 1.90744 1.33918 1.79067 1.37373 1.48270 1.33771 1.18949 1.29790 1.21722 0.90352 0.99896 0.94212 1.19067 0.91475 0.78115 0.95601 0.91627 1.22117 0.99202 1.01683 0.97620 1.21314 0.94561 0.90360 1.50317 0.92112 1.24886 0.95239 0.98843 0.94728 1.69875 1.11995 1.21500 1.49114 0.86420 0.80854 0.82163 0.77852 1.19770 1.20855 1.20873 0.90494 0.88508 0.90684 0.81397 0.82995 0.92935 0.90047 0.93110 0.96870 0.94946 0.88544 0.92631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.57 9.74 36.00 0.35 -1.22 16 2 C -0.09 -1.21 5.93 -104.07 -0.62 -1.83 16 3 C 0.11 1.34 10.87 -17.59 -0.19 1.15 16 4 N -0.47 -6.40 10.31 -10.41 -0.11 -6.51 16 5 C 0.16 2.23 7.27 -17.49 -0.13 2.10 16 6 Cl -0.03 -0.40 29.10 -51.86 -1.51 -1.91 16 7 C -0.12 -1.73 7.83 -38.98 -0.31 -2.04 16 8 C -0.06 -0.92 4.75 -104.65 -0.50 -1.41 16 9 C 0.55 10.91 6.67 -12.19 -0.08 10.83 16 10 O -0.53 -12.40 14.47 5.35 0.08 -12.33 16 11 N -0.58 -11.78 2.75 -176.26 -0.49 -12.26 16 12 C 0.08 1.34 8.38 59.85 0.50 1.84 16 13 C 0.26 6.26 2.63 -69.09 -0.18 6.08 16 14 H 0.07 1.85 6.91 -51.93 -0.36 1.49 16 15 C -0.15 -3.36 8.96 37.16 0.33 -3.02 16 16 C -0.53 -13.73 8.37 -34.44 -0.29 -14.02 16 17 H 0.06 1.57 7.65 -52.49 -0.40 1.16 16 18 C 0.07 1.74 5.30 -17.82 -0.09 1.64 16 19 N -0.89 -24.31 11.32 55.43 0.63 -23.68 16 20 Si 0.90 20.55 29.54 -169.99 -5.02 15.53 16 21 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 23 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 24 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.10 1.51 5.66 -51.93 -0.29 1.21 16 26 H 0.07 0.70 8.12 -51.93 -0.42 0.28 16 27 H 0.17 1.40 8.06 -52.49 -0.42 0.98 16 28 H 0.15 2.08 6.82 -52.48 -0.36 1.72 16 29 H 0.05 0.80 7.28 -51.93 -0.38 0.43 16 30 H 0.08 1.34 6.44 -51.93 -0.33 1.00 16 31 H 0.05 0.71 6.47 -51.93 -0.34 0.37 16 32 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.03 0.68 6.67 -51.93 -0.35 0.33 16 34 H 0.10 2.42 6.07 -51.93 -0.32 2.11 16 35 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 LS Contribution 306.25 15.07 4.62 4.62 Total: -1.00 -29.46 306.25 -6.95 -36.40 By element: Atomic # 1 Polarization: 3.98 SS G_CDS: -3.95 Total: 0.03 kcal Atomic # 6 Polarization: 1.30 SS G_CDS: -1.20 Total: 0.10 kcal Atomic # 7 Polarization: -42.48 SS G_CDS: 0.03 Total: -42.45 kcal Atomic # 8 Polarization: -12.40 SS G_CDS: 0.08 Total: -12.33 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Atomic # 17 Polarization: -0.40 SS G_CDS: -1.51 Total: -1.91 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -29.46 -6.95 -36.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336240152.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.307 kcal (2) G-P(sol) polarization free energy of solvation -29.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds