Wall clock time and date at job start Tue Mar 31 2020 05:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46504 * 109.46801 * 220.74481 * 3 2 1 5 5 C 1.36617 * 120.00266 * 95.42615 * 4 3 2 6 6 H 1.07998 * 120.00431 * 223.74159 * 5 4 3 7 7 C 1.39218 * 120.00176 * 43.74047 * 5 4 3 8 8 N 1.31257 * 119.99881 * 15.42900 * 7 5 4 9 9 Si 1.86798 * 120.00439 * 195.42575 * 7 5 4 10 10 H 1.48510 * 109.46800 * 60.00025 * 9 7 5 11 11 H 1.48497 * 109.47670 * 179.97438 * 9 7 5 12 12 H 1.48493 * 109.47197 * 300.00390 * 9 7 5 13 13 C 1.34776 * 119.99511 * 275.42457 * 4 3 2 14 14 O 1.21552 * 120.00385 * 5.19379 * 13 4 3 15 15 C 1.48193 * 119.99934 * 185.18784 * 13 4 3 16 16 N 1.33579 * 119.23365 * 5.95148 * 15 13 4 17 17 N 1.28907 * 122.01409 * 179.97438 * 16 15 13 18 18 C 1.33848 * 119.76477 * 359.97438 * 17 16 15 19 19 C 1.40315 * 121.76749 * 179.97438 * 18 17 16 20 20 C 1.36205 * 119.63291 * 179.97438 * 19 18 17 21 21 C 1.39434 * 121.07083 * 0.08736 * 20 19 18 22 22 C 1.36145 * 121.00354 * 359.93691 * 21 20 19 23 23 C 1.40508 * 119.56626 * 0.02562 * 22 21 20 24 24 N 1.32184 * 119.23721 * 185.67913 * 15 13 4 25 25 H 4.40640 * 5.51394 * 179.97438 * 4 1 2 26 26 H 1.08992 * 109.47354 * 100.74046 * 3 2 1 27 27 H 1.09000 * 109.47258 * 340.74015 * 3 2 1 28 28 H 0.96997 * 120.00041 * 180.02562 * 8 7 5 29 29 H 1.08009 * 120.18154 * 0.02562 * 19 18 17 30 30 H 1.08005 * 119.46596 * 180.02562 * 20 19 18 31 31 H 1.07997 * 119.49856 * 179.97438 * 21 20 19 32 32 H 1.07999 * 120.22114 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.0474 0.9015 5 6 3.4671 0.7385 2.1899 6 1 3.1565 1.3844 2.9978 7 6 4.2072 -0.4090 2.4615 8 7 4.8398 -1.0268 1.4915 9 14 4.3002 -1.0693 4.2064 10 1 2.9337 -1.4026 4.6830 11 1 5.1435 -2.2914 4.2291 12 1 4.8965 -0.0393 5.0944 13 6 3.2538 2.3150 0.4598 14 8 2.8693 2.6091 -0.6552 15 6 3.8544 3.3504 1.3335 16 7 4.3803 2.9889 2.5070 17 7 4.9165 3.8446 3.3082 18 6 4.9562 5.1386 2.9686 19 6 5.5291 6.1056 3.8087 20 6 5.5465 7.4107 3.4195 21 6 5.0017 7.8047 2.1979 22 6 4.4367 6.8958 1.3563 23 6 4.4009 5.5399 1.7231 24 7 3.8622 4.6095 0.9311 25 1 -1.0501 -0.0001 -0.0004 26 1 3.0093 0.1923 -1.0096 27 1 3.0098 -0.9693 0.3390 28 1 5.3551 -1.8265 1.6807 29 1 5.9547 5.8163 4.7583 30 1 5.9885 8.1527 4.0680 31 1 5.0288 8.8465 1.9148 32 1 4.0189 7.2148 0.4129 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001344041164.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:39 Heat of formation + Delta-G solvation = 146.002185 kcal Electronic energy + Delta-G solvation = -20961.477930 eV Core-core repulsion = 17698.077332 eV Total energy + Delta-G solvation = -3263.400598 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.48975 -38.81333 -37.56769 -35.42006 -34.53713 -32.64493 -31.87435 -31.18457 -30.65925 -27.25743 -25.70631 -25.34867 -24.20634 -22.33313 -20.57533 -18.86981 -18.77537 -18.11912 -17.11781 -16.00587 -15.81204 -15.40151 -14.97690 -14.67188 -14.55862 -14.13743 -14.00108 -13.25515 -12.72291 -12.69305 -12.17643 -12.10230 -12.09259 -11.72429 -11.61326 -11.48935 -11.31841 -11.04933 -10.55376 -10.46143 -9.82431 -9.53301 -9.30223 -9.24016 -8.80871 -8.66512 -8.58841 -7.75398 -6.56394 -4.17696 0.04495 0.54371 1.88571 2.68135 3.17504 3.18923 3.20685 3.32689 3.64809 3.67784 3.89601 4.02439 4.11766 4.29127 4.39556 4.66205 4.74536 4.86914 4.97140 5.19622 5.25207 5.30813 5.60741 5.81156 5.82561 5.99265 6.16948 6.22316 6.49096 6.60715 6.67735 6.84591 7.32088 7.39054 7.61837 8.24615 8.37924 8.77879 8.92132 9.17198 9.60192 10.47517 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.017665 B = 0.006227 C = 0.004907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.692564 B = 4495.601792 C = 5705.079248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.159 4.159 3 C 0.217 3.783 4 N -0.398 5.398 5 C -0.303 4.303 6 H 0.108 0.892 7 C 0.051 3.949 8 N -0.853 5.853 9 Si 0.922 3.078 10 H -0.270 1.270 11 H -0.282 1.282 12 H -0.262 1.262 13 C 0.519 3.481 14 O -0.570 6.570 15 C 0.243 3.757 16 N -0.175 5.175 17 N -0.164 5.164 18 C -0.003 4.003 19 C -0.061 4.061 20 C -0.111 4.111 21 C -0.084 4.084 22 C -0.090 4.090 23 C 0.127 3.873 24 N -0.418 5.418 25 H 0.209 0.791 26 H 0.087 0.913 27 H 0.129 0.871 28 H 0.277 0.723 29 H 0.143 0.857 30 H 0.136 0.864 31 H 0.137 0.863 32 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.143 10.850 4.523 11.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C -0.160 4.160 3 C 0.095 3.905 4 N -0.114 5.114 5 C -0.432 4.432 6 H 0.125 0.875 7 C -0.157 4.157 8 N -0.489 5.489 9 Si 0.747 3.253 10 H -0.196 1.196 11 H -0.207 1.207 12 H -0.186 1.186 13 C 0.305 3.695 14 O -0.452 6.452 15 C -0.026 4.026 16 N -0.036 5.036 17 N -0.029 5.029 18 C -0.135 4.135 19 C -0.083 4.083 20 C -0.132 4.132 21 C -0.107 4.107 22 C -0.109 4.109 23 C -0.013 4.013 24 N -0.141 5.141 25 H 0.226 0.774 26 H 0.105 0.895 27 H 0.146 0.854 28 H 0.087 0.913 29 H 0.161 0.839 30 H 0.154 0.846 31 H 0.155 0.845 32 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 1.005 9.811 4.016 10.649 hybrid contribution 0.044 0.490 0.665 0.828 sum 1.049 10.301 4.682 11.364 Atomic orbital electron populations 1.24616 0.95630 1.02886 1.03123 1.24116 0.95272 0.98411 0.98177 1.18524 0.81861 0.95151 0.94949 1.43256 1.51834 1.04769 1.11577 1.19790 1.31748 1.09288 0.82407 0.87498 1.25543 0.93348 0.97138 0.99708 1.69795 1.26770 1.18893 1.33400 0.86039 0.78697 0.78420 0.82098 1.19561 1.20739 1.18647 1.17394 0.84368 0.82852 0.84932 1.90682 1.54082 1.80776 1.19684 1.24735 0.94750 0.90964 0.92118 1.75302 1.02991 1.23991 1.01282 1.74768 1.05761 0.98559 1.23767 1.21016 1.01013 0.95769 0.95712 1.20765 0.97019 0.91448 0.99083 1.21040 0.99477 0.95952 0.96771 1.21068 0.95960 1.00016 0.93622 1.20841 0.99600 0.89600 1.00878 1.19735 0.94990 0.95351 0.91242 1.69199 1.12770 1.00848 1.31252 0.77385 0.89532 0.85401 0.91291 0.83899 0.84621 0.84547 0.83850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -4.78 19.25 29.55 0.57 -4.21 16 2 C -0.16 -3.57 13.61 -37.12 -0.51 -4.07 16 3 C 0.22 5.19 5.30 -6.82 -0.04 5.15 16 4 N -0.40 -10.30 2.44 -118.91 -0.29 -10.59 16 5 C -0.30 -7.76 7.20 -15.06 -0.11 -7.87 16 6 H 0.11 2.76 6.41 -52.49 -0.34 2.43 16 7 C 0.05 1.27 5.00 -17.43 -0.09 1.18 16 8 N -0.85 -21.65 11.63 55.51 0.65 -21.00 16 9 Si 0.92 19.53 29.58 -169.99 -5.03 14.50 16 10 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 11 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 12 H -0.26 -5.59 7.11 56.52 0.40 -5.19 16 13 C 0.52 13.79 7.58 -12.17 -0.09 13.69 16 14 O -0.57 -16.03 16.59 5.32 0.09 -15.95 16 15 C 0.24 5.98 7.53 -156.49 -1.18 4.80 16 16 N -0.17 -4.18 7.73 32.08 0.25 -3.93 16 17 N -0.16 -3.44 11.68 32.28 0.38 -3.06 16 18 C 0.00 -0.04 6.68 -84.70 -0.57 -0.61 16 19 C -0.06 -0.78 10.00 -39.53 -0.40 -1.17 16 20 C -0.11 -1.07 9.95 -39.87 -0.40 -1.46 16 21 C -0.08 -0.83 9.95 -39.89 -0.40 -1.22 16 22 C -0.09 -1.21 10.01 -39.48 -0.40 -1.61 16 23 C 0.13 2.34 6.61 -84.77 -0.56 1.78 16 24 N -0.42 -9.41 10.23 -9.02 -0.09 -9.51 16 25 H 0.21 3.09 7.80 -54.08 -0.42 2.67 16 26 H 0.09 2.05 7.67 -51.93 -0.40 1.66 16 27 H 0.13 3.08 5.86 -51.93 -0.30 2.77 16 28 H 0.28 6.58 8.30 -40.82 -0.34 6.25 16 29 H 0.14 1.50 8.06 -52.48 -0.42 1.08 16 30 H 0.14 0.80 8.06 -52.48 -0.42 0.38 16 31 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 32 H 0.14 1.73 8.06 -52.49 -0.42 1.31 16 LS Contribution 298.16 15.07 4.49 4.49 Total: -1.00 -31.61 298.16 -5.99 -37.60 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -2.29 Total: 3.06 kcal Atomic # 6 Polarization: 8.53 SS G_CDS: -4.15 Total: 4.38 kcal Atomic # 7 Polarization: -48.98 SS G_CDS: 0.89 Total: -48.09 kcal Atomic # 8 Polarization: -16.03 SS G_CDS: 0.09 Total: -15.95 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -5.03 Total: 14.50 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -31.61 -5.99 -37.60 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344041164.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.606 kcal (2) G-P(sol) polarization free energy of solvation -31.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 151.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 146.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds