Wall clock time and date at job start Tue Mar 31 2020 05:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30992 * 1 3 3 C 1.50704 * 119.99856 * 2 1 4 4 N 1.46506 * 109.47013 * 125.00022 * 3 2 1 5 5 C 1.46495 * 119.99724 * 269.99537 * 4 3 2 6 6 C 1.50707 * 109.47181 * 270.00629 * 5 4 3 7 7 H 1.07992 * 119.99840 * 359.97438 * 6 5 4 8 8 C 1.37881 * 119.99853 * 180.02562 * 6 5 4 9 9 N 1.31514 * 120.00066 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 119.99735 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47289 * 0.02562 * 10 8 6 12 12 H 1.48499 * 109.46593 * 119.99930 * 10 8 6 13 13 H 1.48498 * 109.47206 * 239.99837 * 10 8 6 14 14 C 1.34772 * 120.00084 * 90.00290 * 4 3 2 15 15 O 1.21281 * 119.99964 * 180.02562 * 14 4 3 16 16 C 1.50702 * 120.00043 * 359.97438 * 14 4 3 17 17 C 1.50706 * 109.46975 * 180.02562 * 16 14 4 18 18 N 1.29317 * 126.06026 * 90.02755 * 17 16 14 19 19 N 1.26102 * 117.96657 * 179.97438 * 18 17 16 20 20 C 1.30238 * 117.62460 * 0.02562 * 19 18 17 21 21 N 1.38695 * 126.17155 * 179.97438 * 20 19 18 22 22 S 1.76475 * 126.06637 * 269.71744 * 17 16 14 23 23 H 1.08002 * 119.99992 * 180.02562 * 1 2 3 24 24 H 1.08002 * 120.00153 * 0.02562 * 1 2 3 25 25 H 1.08002 * 120.00153 * 179.97438 * 2 1 3 26 26 H 1.08992 * 109.47303 * 4.99845 * 3 2 1 27 27 H 1.09004 * 109.46790 * 244.99230 * 3 2 1 28 28 H 1.09005 * 109.47337 * 30.00197 * 5 4 3 29 29 H 1.08995 * 109.47340 * 150.00439 * 5 4 3 30 30 H 0.96997 * 119.99977 * 180.02562 * 9 8 6 31 31 H 1.08994 * 109.46872 * 60.00875 * 16 14 4 32 32 H 1.08997 * 109.47234 * 300.00427 * 16 14 4 33 33 H 0.97003 * 120.00060 * 0.02562 * 21 20 19 34 34 H 0.97003 * 119.99878 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9937 1.3319 1.1315 5 6 2.5588 1.8650 2.4248 6 6 2.8441 3.3438 2.4803 7 1 3.3038 3.8370 1.6367 8 6 2.5191 4.0668 3.6085 9 7 1.9597 3.4660 4.6360 10 14 2.8734 5.8996 3.6774 11 1 3.5011 6.3308 2.4025 12 1 1.6032 6.6419 3.8792 13 1 3.7970 6.1832 4.8052 14 6 4.2496 0.8663 0.9825 15 8 5.0196 0.8881 1.9193 16 6 4.6969 0.3175 -0.3479 17 6 6.1312 -0.1341 -0.2484 18 7 6.5357 -1.3157 0.0870 19 7 7.7783 -1.5280 0.1206 20 6 8.5684 -0.5390 -0.1855 21 7 9.9547 -0.5749 -0.2061 22 16 7.5566 0.8535 -0.5764 23 1 -0.5400 -0.9353 0.0004 24 1 -0.5400 0.9353 -0.0004 25 1 1.8500 -0.9353 0.0004 26 1 1.3585 2.1316 0.0895 27 1 2.6213 1.4026 -0.9314 28 1 1.4886 1.6968 2.5459 29 1 3.0988 1.3605 3.2259 30 1 1.7308 3.9747 5.4295 31 1 4.6121 1.0939 -1.1082 32 1 4.0678 -0.5294 -0.6216 33 1 10.4221 -1.3938 0.0218 34 1 10.4570 0.2188 -0.4484 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001520192007.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:01 Heat of formation + Delta-G solvation = 54.232471 kcal Electronic energy + Delta-G solvation = -19393.941476 eV Core-core repulsion = 16262.005396 eV Total energy + Delta-G solvation = -3131.936080 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.089 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.75614 -39.08540 -35.75456 -35.33673 -33.26371 -32.25463 -31.90890 -28.60885 -27.20230 -25.50676 -24.77996 -22.71944 -20.46098 -19.87379 -19.43512 -18.47360 -16.93723 -16.68080 -16.43136 -16.33900 -15.43577 -15.20212 -14.77991 -14.41175 -14.27142 -13.56364 -13.14168 -12.93821 -12.65553 -12.42923 -11.82428 -11.68496 -11.60988 -11.27263 -11.02713 -10.87663 -10.61699 -10.34885 -10.19477 -9.92981 -9.63722 -9.45751 -9.18565 -9.02722 -8.43749 -8.28063 -7.71939 -6.04280 -4.09111 0.69175 0.83071 1.40792 2.45501 2.84733 3.19529 3.29204 3.32651 3.37513 3.41346 3.95703 4.40118 4.46260 4.96188 5.03172 5.20681 5.27654 5.31266 5.40883 5.55298 5.59747 5.77934 6.01738 6.18749 6.59527 6.81140 6.91333 7.06685 7.07433 7.45571 7.52448 7.91894 8.22796 8.34964 8.88066 8.88905 9.03501 9.55803 11.03920 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.015337 B = 0.005163 C = 0.004168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.240446 B = 5421.970131 C = 6716.417117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.171 4.171 3 C 0.134 3.866 4 N -0.590 5.590 5 C 0.248 3.752 6 C -0.526 4.526 7 H 0.058 0.942 8 C 0.061 3.939 9 N -0.893 5.893 10 Si 0.897 3.103 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.283 1.283 14 C 0.511 3.489 15 O -0.528 6.528 16 C -0.060 4.060 17 C 0.044 3.956 18 N -0.222 5.222 19 N -0.341 5.341 20 C 0.292 3.708 21 N -0.808 5.808 22 S 0.047 5.953 23 H 0.094 0.906 24 H 0.099 0.901 25 H 0.106 0.894 26 H 0.090 0.910 27 H 0.075 0.925 28 H 0.034 0.966 29 H 0.044 0.956 30 H 0.263 0.737 31 H 0.112 0.888 32 H 0.122 0.878 33 H 0.415 0.585 34 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.789 -5.653 -15.073 17.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.190 4.190 3 C 0.010 3.990 4 N -0.322 5.322 5 C 0.129 3.871 6 C -0.565 4.565 7 H 0.076 0.924 8 C -0.141 4.141 9 N -0.532 5.532 10 Si 0.725 3.275 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.209 1.209 14 C 0.295 3.705 15 O -0.404 6.404 16 C -0.105 4.105 17 C -0.242 4.242 18 N -0.055 5.055 19 N -0.188 5.188 20 C -0.083 4.083 21 N -0.361 5.361 22 S 0.283 5.717 23 H 0.112 0.888 24 H 0.117 0.883 25 H 0.124 0.876 26 H 0.108 0.892 27 H 0.093 0.907 28 H 0.052 0.948 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.130 0.870 32 H 0.140 0.860 33 H 0.248 0.752 34 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 8.095 -5.919 -14.275 17.446 hybrid contribution 0.538 1.082 0.217 1.228 sum 8.634 -4.837 -14.058 17.192 Atomic orbital electron populations 1.23820 0.95857 1.01777 1.00406 1.23441 0.96469 0.99048 1.00034 1.20640 0.93229 0.95576 0.89564 1.48188 1.10073 1.60104 1.13815 1.19305 0.95500 0.93744 0.78584 1.21464 1.40498 0.93276 1.01274 0.92362 1.24933 0.95083 0.98717 0.95343 1.69945 1.42056 1.36058 1.05169 0.86461 0.77912 0.85034 0.78117 1.19793 1.20966 1.20918 1.19909 0.82805 0.79001 0.88822 1.90716 1.52538 1.55705 1.41477 1.20279 0.87973 1.03123 0.99110 1.28473 0.99066 0.90880 1.05778 1.70630 1.05352 1.17342 1.12191 1.71325 0.96463 1.25301 1.25703 1.26713 0.91958 0.91919 0.97661 1.41285 0.99518 1.17983 1.77321 1.85768 1.02022 1.15097 1.68854 0.88755 0.88294 0.87559 0.89207 0.90710 0.94776 0.93824 0.92770 0.87004 0.86045 0.75218 0.75225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.27 14.32 29.02 0.42 -1.85 16 2 C -0.17 -2.33 9.74 -36.02 -0.35 -2.68 16 3 C 0.13 2.04 5.65 -5.19 -0.03 2.01 16 4 N -0.59 -12.15 2.44 -176.43 -0.43 -12.58 16 5 C 0.25 6.42 5.16 -5.19 -0.03 6.39 16 6 C -0.53 -14.70 9.39 -34.44 -0.32 -15.03 16 7 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 8 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 9 N -0.89 -26.54 13.29 55.43 0.74 -25.81 16 10 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 11 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 14 C 0.51 10.50 7.66 -10.99 -0.08 10.41 16 15 O -0.53 -13.48 15.61 5.56 0.09 -13.39 16 16 C -0.06 -0.90 4.88 -29.03 -0.14 -1.04 16 17 C 0.04 0.72 6.28 -13.33 -0.08 0.64 16 18 N -0.22 -4.03 11.55 33.57 0.39 -3.64 16 19 N -0.34 -5.78 11.61 31.00 0.36 -5.42 16 20 C 0.29 3.94 9.05 -87.15 -0.79 3.15 16 21 N -0.81 -6.73 9.08 30.98 0.28 -6.45 16 22 S 0.05 0.65 23.54 -107.50 -2.53 -1.88 16 23 H 0.09 1.03 8.06 -52.49 -0.42 0.61 16 24 H 0.10 1.21 7.84 -52.49 -0.41 0.80 16 25 H 0.11 1.38 7.83 -52.49 -0.41 0.97 16 26 H 0.09 1.43 7.72 -51.93 -0.40 1.02 16 27 H 0.07 0.89 6.44 -51.93 -0.33 0.55 16 28 H 0.03 0.90 8.07 -51.93 -0.42 0.48 16 29 H 0.04 1.30 7.42 -51.93 -0.39 0.91 16 30 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 31 H 0.11 1.29 7.40 -51.93 -0.38 0.91 16 32 H 0.12 1.51 7.77 -51.93 -0.40 1.11 16 33 H 0.42 2.76 8.95 -40.82 -0.37 2.39 16 34 H 0.42 2.24 8.95 -40.82 -0.37 1.88 16 LS Contribution 318.16 15.07 4.79 4.79 Total: -1.00 -36.35 318.16 -6.69 -43.04 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: -3.85 Total: 1.02 kcal Atomic # 6 Polarization: 5.16 SS G_CDS: -1.51 Total: 3.65 kcal Atomic # 7 Polarization: -55.23 SS G_CDS: 1.34 Total: -53.89 kcal Atomic # 8 Polarization: -13.48 SS G_CDS: 0.09 Total: -13.39 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 16 Polarization: 0.65 SS G_CDS: -2.53 Total: -1.88 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -36.35 -6.69 -43.04 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520192007.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.272 kcal (2) G-P(sol) polarization free energy of solvation -36.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds