Wall clock time and date at job start Tue Mar 31 2020 06:36:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86807 * 120.00001 * 2 1 4 4 H 1.48500 * 109.46837 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47121 * 300.00021 * 3 2 1 6 6 H 1.48496 * 109.46935 * 60.00438 * 3 2 1 7 7 C 1.37875 * 120.00162 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00511 * 172.92424 * 7 2 1 9 9 C 1.50707 * 119.99627 * 352.92116 * 7 2 1 10 10 C 1.52999 * 115.54809 * 84.53452 * 9 7 2 11 11 N 1.46495 * 109.47512 * 39.67637 * 10 9 7 12 12 C 1.34774 * 120.00565 * 181.16474 * 11 10 9 13 13 O 1.21284 * 119.99456 * 0.02562 * 12 11 10 14 14 C 1.50694 * 120.00804 * 180.02562 * 12 11 10 15 15 H 1.09002 * 110.85533 * 307.35109 * 14 12 11 16 16 C 1.54893 * 110.83820 * 71.35113 * 14 12 11 17 17 C 1.51693 * 102.47507 * 142.53615 * 16 14 12 18 18 C 1.47469 * 125.86082 * 164.54964 * 17 16 14 19 19 O 1.21473 * 120.00320 * 359.71455 * 18 17 16 20 20 O 1.34764 * 120.00156 * 179.71249 * 18 17 16 21 21 N 1.29057 * 108.27223 * 344.28559 * 17 16 14 22 22 O 1.41395 * 112.87919 * 359.90825 * 21 17 16 23 23 C 1.52994 * 117.51627 * 230.22985 * 9 7 2 24 24 C 1.53002 * 117.49929 * 298.86160 * 9 7 2 25 25 H 0.97002 * 119.99520 * 5.02156 * 1 2 3 26 26 H 1.09004 * 109.47073 * 279.68065 * 10 9 7 27 27 H 1.09002 * 109.46993 * 159.68217 * 10 9 7 28 28 H 0.97001 * 120.00266 * 1.17067 * 11 10 9 29 29 H 1.09000 * 110.90909 * 24.25962 * 16 14 12 30 30 H 1.08999 * 110.73959 * 260.73682 * 16 14 12 31 31 H 0.96691 * 116.99956 * 179.97438 * 20 18 17 32 32 H 1.09001 * 117.50270 * 214.96861 * 23 9 7 33 33 H 1.09001 * 117.50066 * 359.97438 * 23 9 7 34 34 H 1.08998 * 117.49683 * 359.97438 * 24 9 7 35 35 H 1.08997 * 117.49814 * 144.97450 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0784 -1.1976 -0.1157 9 6 1.2596 -2.4942 0.1597 10 6 0.6733 -3.0816 -1.1257 11 7 1.6222 -2.8934 -2.2258 12 6 1.3073 -3.3140 -3.4669 13 8 0.2380 -3.8480 -3.6730 14 6 2.2835 -3.1209 -4.5985 15 1 2.6034 -2.0808 -4.6618 16 6 3.4967 -4.0721 -4.4479 17 6 3.7853 -4.4650 -5.8844 18 6 5.0231 -5.0994 -6.3745 19 8 5.9262 -5.3468 -5.6008 20 8 5.1522 -5.4046 -7.6807 21 7 2.7594 -4.1538 -6.6029 22 8 1.7186 -3.5642 -5.8490 23 6 1.7703 -3.4759 1.2162 24 6 0.4721 -2.7022 1.4549 25 1 -0.4849 0.8369 -0.0735 26 1 -0.2626 -2.5755 -1.3626 27 1 0.4854 -4.1462 -0.9860 28 1 2.4773 -2.4660 -2.0610 29 1 3.2338 -4.9467 -3.8529 30 1 4.3468 -3.5473 -4.0120 31 1 5.9818 -5.8190 -7.9547 32 1 1.6886 -4.5403 0.9957 33 1 2.6456 -3.1817 1.7954 34 1 0.4931 -1.8988 2.1912 35 1 -0.4639 -3.2572 1.3912 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574480563.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:57 Heat of formation + Delta-G solvation = -72.174280 kcal Electronic energy + Delta-G solvation = -21784.337588 eV Core-core repulsion = 18171.874477 eV Total energy + Delta-G solvation = -3612.463110 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.109 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.14487 -40.16707 -38.61919 -36.73223 -36.64925 -33.66581 -33.32815 -32.11684 -31.23330 -26.71898 -25.68960 -25.49268 -23.98637 -21.25374 -20.80399 -20.10028 -19.50326 -18.57557 -17.70089 -17.50851 -16.28318 -16.19858 -16.02182 -15.39049 -15.10864 -14.80784 -14.34200 -14.17772 -13.62203 -13.43174 -13.33165 -12.94941 -12.62193 -12.36059 -12.08267 -11.86532 -11.71313 -11.51249 -11.32585 -11.12416 -11.01494 -10.60971 -10.32602 -10.21759 -9.75906 -9.37272 -9.03753 -8.63976 -8.50639 -8.08874 -6.20105 -4.30621 0.35434 1.87889 2.27433 2.63471 2.88497 3.16295 3.26966 3.27403 3.59602 3.96292 4.15495 4.24350 4.37984 4.68153 4.99925 5.01633 5.11763 5.23387 5.34006 5.39172 5.82357 5.93727 6.20860 6.38532 6.43341 6.60243 6.63237 6.77212 7.00726 7.09439 7.27163 7.29797 7.38612 7.68646 8.12419 8.21171 8.66904 8.72113 9.37939 10.87419 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.019533 B = 0.004205 C = 0.004044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.137886 B = 6657.151536 C = 6921.860025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.078 3.922 3 Si 0.888 3.112 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.282 1.282 7 C -0.508 4.508 8 H 0.062 0.938 9 C 0.026 3.974 10 C 0.164 3.836 11 N -0.683 5.683 12 C 0.509 3.491 13 O -0.533 6.533 14 C 0.024 3.976 15 H 0.123 0.877 16 C -0.118 4.118 17 C 0.050 3.950 18 C 0.567 3.433 19 O -0.484 6.484 20 O -0.495 6.495 21 N -0.204 5.204 22 O -0.142 6.142 23 C -0.210 4.210 24 C -0.151 4.151 25 H 0.263 0.737 26 H 0.071 0.929 27 H 0.040 0.960 28 H 0.407 0.593 29 H 0.118 0.882 30 H 0.125 0.875 31 H 0.423 0.577 32 H 0.066 0.934 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.926 -7.128 -9.362 15.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.127 4.127 3 Si 0.715 3.285 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.208 1.208 7 C -0.546 4.546 8 H 0.080 0.920 9 C 0.026 3.974 10 C 0.041 3.959 11 N -0.334 5.334 12 C 0.291 3.709 13 O -0.410 6.410 14 C -0.038 4.038 15 H 0.141 0.859 16 C -0.157 4.157 17 C -0.142 4.142 18 C 0.407 3.593 19 O -0.368 6.368 20 O -0.306 6.306 21 N 0.054 4.946 22 O -0.166 6.166 23 C -0.247 4.247 24 C -0.189 4.189 25 H 0.073 0.927 26 H 0.090 0.910 27 H 0.058 0.942 28 H 0.244 0.756 29 H 0.136 0.864 30 H 0.143 0.857 31 H 0.283 0.717 32 H 0.085 0.915 33 H 0.097 0.903 34 H 0.101 0.899 35 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 8.287 -7.276 -10.139 14.980 hybrid contribution 1.571 1.086 0.782 2.063 sum 9.857 -6.190 -9.357 14.934 Atomic orbital electron populations 1.69980 1.05978 1.27026 1.47282 1.24996 0.94753 0.98975 0.94020 0.86611 0.80207 0.83816 0.77834 1.19599 1.20967 1.20834 1.20329 0.92973 0.88524 1.52759 0.91954 1.19026 0.98475 0.94072 0.85854 1.20957 0.91956 0.97160 0.85814 1.45880 1.22004 1.58607 1.06905 1.19647 0.87282 0.80477 0.83541 1.90730 1.23702 1.43407 1.83210 1.23852 0.92812 1.00759 0.86395 0.85913 1.22830 0.98796 1.01432 0.92678 1.24659 0.93796 1.00275 0.95488 1.19127 0.84431 0.75225 0.80534 1.90994 1.39625 1.49258 1.56883 1.84646 1.46177 1.74107 1.25686 1.78562 0.95728 1.01455 1.18862 1.91450 1.24366 1.74108 1.26696 1.23096 0.98447 0.95626 1.07538 1.22505 0.92611 1.01205 1.02585 0.92728 0.91040 0.94159 0.75648 0.86385 0.85667 0.71721 0.91548 0.90302 0.89851 0.91611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.91 12.97 55.43 0.72 -22.19 16 2 C 0.08 1.94 5.39 -17.82 -0.10 1.84 16 3 Si 0.89 19.32 29.55 -169.99 -5.02 14.30 16 4 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 5 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 6 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.51 -12.04 7.44 -34.44 -0.26 -12.30 16 8 H 0.06 1.44 7.82 -52.49 -0.41 1.02 16 9 C 0.03 0.58 1.70 -155.66 -0.27 0.32 16 10 C 0.16 3.48 5.75 -4.04 -0.02 3.46 16 11 N -0.68 -12.50 5.33 -60.30 -0.32 -12.82 16 12 C 0.51 9.21 7.13 -10.99 -0.08 9.14 16 13 O -0.53 -11.88 16.59 -13.28 -0.22 -12.10 16 14 C 0.02 0.34 4.24 -26.89 -0.11 0.22 16 15 H 0.12 1.45 8.14 -51.93 -0.42 1.02 16 16 C -0.12 -1.31 6.44 -26.39 -0.17 -1.48 16 17 C 0.05 0.58 7.30 -79.51 -0.58 0.00 16 18 C 0.57 5.62 8.34 34.49 0.29 5.91 16 19 O -0.48 -5.60 17.74 -19.24 -0.34 -5.94 16 20 O -0.49 -3.62 13.43 -40.67 -0.55 -4.17 16 21 N -0.20 -2.86 12.51 35.26 0.44 -2.42 16 22 O -0.14 -2.32 11.82 -30.21 -0.36 -2.67 16 23 C -0.21 -4.13 9.88 -26.73 -0.26 -4.39 16 24 C -0.15 -3.28 9.51 -26.73 -0.25 -3.53 16 25 H 0.26 6.71 8.32 -40.82 -0.34 6.37 16 26 H 0.07 1.74 8.14 -51.93 -0.42 1.32 16 27 H 0.04 0.82 7.95 -51.93 -0.41 0.41 16 28 H 0.41 6.79 7.46 -40.82 -0.30 6.48 16 29 H 0.12 1.31 7.91 -51.93 -0.41 0.90 16 30 H 0.13 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.42 0.77 9.11 45.56 0.42 1.18 16 32 H 0.07 1.19 8.08 -51.93 -0.42 0.77 16 33 H 0.08 1.53 8.14 -51.93 -0.42 1.10 16 34 H 0.08 1.93 8.14 -51.93 -0.42 1.51 16 35 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 319.88 15.07 4.82 4.82 Total: -1.00 -31.53 319.88 -5.86 -37.39 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -3.21 Total: 6.61 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: -1.81 Total: -0.81 kcal Atomic # 7 Polarization: -38.27 SS G_CDS: 0.84 Total: -37.43 kcal Atomic # 8 Polarization: -23.42 SS G_CDS: -1.46 Total: -24.88 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -5.02 Total: 14.30 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.53 -5.86 -37.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574480563.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.784 kcal (2) G-P(sol) polarization free energy of solvation -31.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds